FFCP PHASE1:Hg19::chr6:128842168..128842186,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5796 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9674 | |||
|TSSclassifier=not | |||
|UniProt=F5GXI4,F5GWP2,Q15262,Q59EZ1 | |||
|association_with_transcript=-298bp_to_ENST00000368227,ENST00000427676,NM_001135648,uc003qbj.2,uc003qbk.2,uc003qbm.3,uc010kfc.2,uc011ebu.1,uc011ebv.1_5end | |||
|description=CAGE_peak_9_at_PTPRK_5end | |||
|id=chr6:128842168..128842186,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000244;1.63e-17;4!CL:0000731;1.63e-17;4!CL:0002368;3.32e-14;13!CL:0002076;1.97e-12;42!CL:0002621;2.53e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,1.74e-17,4;CL:0000731,1.74e-17,4;CL:0002368,4.78e-14,13;CL:0002076,4.51e-13,42;CL:0002621,2.81e-11,3;CL:0000223,4.36e-09,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3347;1.05e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,9.02e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000481!1.65e-11!347;UBERON:0000475!2.19e-11!365;UBERON:0000119!1.87e-08!312;UBERON:0000483!2.13e-08!309;UBERON:0001950!2.38e-08!20;UBERON:0000033!3.71e-08!123;UBERON:0000161!5.50e-08!35;UBERON:0006554!6.08e-08!44;UBERON:0001008!1.30e-07!45;UBERON:0000477!2.03e-07!286;UBERON:0002619!3.03e-07!22;UBERON:0000153!3.49e-07!129;UBERON:0007811!3.49e-07!129;UBERON:0004111!5.45e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.02e-15;12!UBERON:0000365;3.98e-14;5!UBERON:0005910;7.32e-12;6!UBERON:0001949;2.53e-11;3!UBERON:0001828;3.86e-09;8!UBERON:0004913;1.05e-08;1!UBERON:0003703;1.05e-08;1!UBERON:0001174;1.05e-08;1!UBERON:0004914;1.05e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.18e-14,5;UBERON:0005910,7.63e-12,6;UBERON:0001949,2.81e-11,3;UBERON:0001828,4.57e-09,8;UBERON:0004913,7.75e-09,1;UBERON:0003703,7.75e-09,1;UBERON:0001174,7.75e-09,1;UBERON:0004914,7.75e-09,1 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0.866364470720326,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0.61246251376468,0,0.516628905878827,1.18800285728205,0,0,0,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.302256294682921,0,2.12586938479627,2.18196896472668,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0.93733833986777,2.85569617938061,0.425325291727159,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,1.91699884393266,1.14861935834114,0,0.434343920002738,1.02738161275192,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0.702848489956279,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.246381468041427,0,0,0,2.6065841139427,0.0920809889358963,0.229628896329213,0.182091168006717,0.262248829918848,0,0.462092022626489,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0.215915916102139,0,0.270946437543853,0,0.509752546090077,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,1.72279661398852,0.650060246036521,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0,1.15699440752685,1.34533047155574,5.23212121227795,0.708104465988849,0,0.94443704049192,0,0,0,1.73986598415015,0,0.286249773483982,0.372158369359667,0.949138274156178,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0.487426979262569,0,0.409499734223957,0.141405431953713,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0.281695602532241,0,0,1.07001315444375,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0.0941438007767792,1.29151611801369,0,1.33029046061003,4.59446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0.23874448473769,0,0,0.994147647766298,0.281338832821026,0.222617410045812,0,0,0,0,0,0.102268682502155,0,0.311039587661807,0.269605053441981,0,0,0,0,0,1.93866549219044,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0.331737779793674,0,0.219385397153973,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0.0870592065804026,0,0.343972064943233,0,0,0,0.0969890164884194,0,0,0.274083849293502,0,0.316553979779393,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0.104602846312333,0.203996435272644,0,0,0.273810757783986,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0.511164065356265,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0,0,0,0,0.244052529803926,0.500763722825999,0,0.221858103073705,0,0,0,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0.189403005275089,1.0062716070103,0,0,0,0.15543720058278,0.443565449968902,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.800055529326307,0,0,0,0,0,0.260994291965212,0.226705925512272,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0.829550616910385,0,0,0,0,0.491545817507439,0,0,0,0,0.567515953566836,0.736423801007363,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0.918736432059601,0.128458450192919,0,0.319267718114302,0.205116364240755,0.252071696221718,0.276629009856872,0,0,0.196295437002051,0,0,0,0,1.3807198521202,0,0,0,0,0,0,1.47856086217045,0.337687923091973,0,0.206686796501184,0.126831620387814,0,0,0,0,0.511049710558381,0,0,0.606965604236632,0,0,0,0.342976018874837,0,0.263091094251396,0,0.667388411352415,0.156986185701028,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0.0852134047591577,0,0,1.5510319283216,0.955538938977433,0.335566295393377,0,0.243835849964539,0,0,0,0,0,0,0.356760272332706,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.240724100067505,0.730336388246517,0.458729283404541,0,0.157771562193185,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0,0.33639558774184,0,0,0,0.342233301085281,0.0673520530145875,0.0717222053926763,0.332660356546013,0.814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@PTPRK | |||
}} |
Revision as of 13:49, 22 January 2014
Short description: | p9@PTPRK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PTPRK_5end |
Coexpression cluster: | NA |
Association with transcript: | -298bp_to_ENST00000368227, ENST00000427676, NM_001135648, uc003qbj.2, uc003qbk.2, uc003qbm.3, uc010kfc.2, uc011ebu.1, uc011ebv.1_5end |
EntrezGene: | PTPRK |
HGNC: | 9674 |
UniProt: | F5GXI4F5GWP2Q15262Q59EZ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.74e-17 | 4 |
urothelial cell | 1.74e-17 | 4 |
respiratory epithelial cell | 4.78e-14 | 13 |
endo-epithelial cell | 4.51e-13 | 42 |
gingival epithelial cell | 2.81e-11 | 3 |
endodermal cell | 4.36e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
urothelium | 4.18e-14 | 5 |
transitional epithelium | 7.63e-12 | 6 |
gingival epithelium | 2.81e-11 | 3 |
gingiva | 4.57e-09 | 8 |
hepatopancreatic ampulla | 7.75e-09 | 1 |
extrahepatic bile duct | 7.75e-09 | 1 |
common bile duct | 7.75e-09 | 1 |
duodenal papilla | 7.75e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 9.02e-09 | 1 |