FFCP PHASE1:Hg19::chr8:9911693..9911774,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4482 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7377 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UJ68 | |||
|association_with_transcript=-3bp_to_ENST00000317173_5end | |||
|description=CAGE_peak_2_at_MSRA_5end | |||
|id=chr8:9911693..9911774,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.49e-10!18;CL:0000789!1.49e-10!18;CL:0002420!1.49e-10!18;CL:0002419!1.49e-10!18;CL:0000790!1.49e-10!18;CL:0000084!2.86e-07!25;CL:0000827!2.86e-07!25;CL:0000838!4.69e-07!52;CL:0000542!7.47e-07!53;CL:0000051!7.47e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.00e-11;18!CL:0000789;8.00e-11;18!CL:0002419;8.00e-11;18!CL:0000084;2.00e-07;25!CL:0000625;7.47e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.31e-10,18;CL:0000789,1.31e-10,18;CL:0002420,1.31e-10,18;CL:0002419,1.31e-10,18;CL:0000790,1.31e-10,18;CL:0000084,1.99e-07,25;CL:0000827,1.99e-07,25;CL:0000838,2.35e-07,52;CL:0000542,3.82e-07,53;CL:0000051,3.82e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;8.00e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.97e-33!115;UBERON:0001049!7.80e-22!57;UBERON:0005068!7.80e-22!57;UBERON:0006241!7.80e-22!57;UBERON:0007135!7.80e-22!57;UBERON:0002346!2.98e-19!90;UBERON:0003075!2.15e-18!86;UBERON:0007284!2.15e-18!86;UBERON:0002616!4.37e-18!59;UBERON:0000955!5.82e-17!69;UBERON:0006238!5.82e-17!69;UBERON:0003080!1.17e-16!42;UBERON:0002780!1.28e-16!41;UBERON:0001890!1.28e-16!41;UBERON:0006240!1.28e-16!41;UBERON:0000073!2.58e-16!94;UBERON:0001016!2.58e-16!94;UBERON:0005743!2.67e-16!86;UBERON:0001017!4.89e-16!82;UBERON:0002020!2.98e-15!34;UBERON:0003528!2.98e-15!34;UBERON:0001893!3.93e-15!34;UBERON:0003056!8.08e-15!61;UBERON:0002791!8.40e-15!33;UBERON:0001869!1.46e-14!32;UBERON:0002619!5.53e-11!22;UBERON:0000956!6.62e-11!25;UBERON:0000203!6.62e-11!25;UBERON:0000153!2.44e-10!129;UBERON:0007811!2.44e-10!129;UBERON:0001950!4.11e-10!20;UBERON:0000033!7.83e-09!123;UBERON:0000025!1.43e-07!194;UBERON:0000924!2.35e-07!173;UBERON:0006601!2.35e-07!173;UBERON:0004121!8.77e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.19e-13;34!UBERON:0002020;1.19e-13;34!UBERON:0001869;1.20e-13;32!UBERON:0002791;1.30e-13;32!UBERON:0001893;1.47e-13;34!UBERON:0002780;1.43e-12;41!UBERON:0001890;1.43e-12;41!UBERON:0000073;2.28e-12;53!UBERON:0002616;2.28e-12;53!UBERON:0002619;2.91e-11;22!UBERON:0000956;3.33e-11;25!UBERON:0000203;3.33e-11;25!UBERON:0001950;2.20e-10;20!UBERON:0007023;2.99e-09;114!UBERON:0000955;1.37e-08;68!UBERON:0001017;5.09e-08;75!UBERON:0001016;2.37e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.03e-33,114;UBERON:0001049,6.61e-22,56;UBERON:0005068,6.61e-22,56;UBERON:0006241,6.61e-22,56;UBERON:0007135,6.61e-22,56;UBERON:0002346,2.71e-21,86;UBERON:0000073,3.95e-21,53;UBERON:0002616,3.95e-21,53;UBERON:0003075,1.66e-20,82;UBERON:0007284,1.66e-20,82;UBERON:0000955,4.97e-17,68;UBERON:0006238,4.97e-17,68;UBERON:0002780,1.04e-16,41;UBERON:0001890,1.04e-16,41;UBERON:0003080,1.04e-16,41;UBERON:0006240,1.04e-16,41;UBERON:0001017,4.44e-16,81;UBERON:0001016,4.67e-16,89;UBERON:0003056,2.23e-15,61;UBERON:0003528,2.46e-15,34;UBERON:0002020,2.46e-15,34;UBERON:0001893,3.25e-15,34;UBERON:0001869,1.21e-14,32;UBERON:0002791,1.55e-14,32;UBERON:0010371,1.54e-12,104;UBERON:0010314,3.36e-11,132;UBERON:0002619,4.85e-11,22;UBERON:0000956,5.81e-11,25;UBERON:0000203,5.81e-11,25;UBERON:0001950,3.65e-10,20;UBERON:0004121,5.33e-08,171;UBERON:0000924,5.33e-08,171;UBERON:0006601,5.33e-08,171;UBERON:0000025,9.71e-08,192 | |||
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| |||
|short_description=p2@MSRA | |||
}} |
Revision as of 20:37, 22 January 2014
Short description: | p2@MSRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MSRA_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_ENST00000317173_5end |
EntrezGene: | MSRA |
HGNC: | 7377 |
UniProt: | Q9UJ68 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.31e-10 | 18 |
alpha-beta T cell | 1.31e-10 | 18 |
immature T cell | 1.31e-10 | 18 |
mature T cell | 1.31e-10 | 18 |
immature alpha-beta T cell | 1.31e-10 | 18 |
T cell | 1.99e-07 | 25 |
pro-T cell | 1.99e-07 | 25 |
lymphoid lineage restricted progenitor cell | 2.35e-07 | 52 |
lymphocyte | 3.82e-07 | 53 |
common lymphoid progenitor | 3.82e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.03e-33 | 114 |
neural tube | 6.61e-22 | 56 |
neural rod | 6.61e-22 | 56 |
future spinal cord | 6.61e-22 | 56 |
neural keel | 6.61e-22 | 56 |
neurectoderm | 2.71e-21 | 86 |
regional part of nervous system | 3.95e-21 | 53 |
regional part of brain | 3.95e-21 | 53 |
neural plate | 1.66e-20 | 82 |
presumptive neural plate | 1.66e-20 | 82 |
brain | 4.97e-17 | 68 |
future brain | 4.97e-17 | 68 |
regional part of forebrain | 1.04e-16 | 41 |
forebrain | 1.04e-16 | 41 |
anterior neural tube | 1.04e-16 | 41 |
future forebrain | 1.04e-16 | 41 |
central nervous system | 4.44e-16 | 81 |
nervous system | 4.67e-16 | 89 |
pre-chordal neural plate | 2.23e-15 | 61 |
brain grey matter | 2.46e-15 | 34 |
gray matter | 2.46e-15 | 34 |
telencephalon | 3.25e-15 | 34 |
cerebral hemisphere | 1.21e-14 | 32 |
regional part of telencephalon | 1.55e-14 | 32 |
ecto-epithelium | 1.54e-12 | 104 |
structure with developmental contribution from neural crest | 3.36e-11 | 132 |
regional part of cerebral cortex | 4.85e-11 | 22 |
cerebral cortex | 5.81e-11 | 25 |
pallium | 5.81e-11 | 25 |
neocortex | 3.65e-10 | 20 |
ectoderm-derived structure | 5.33e-08 | 171 |
ectoderm | 5.33e-08 | 171 |
presumptive ectoderm | 5.33e-08 | 171 |
tube | 9.71e-08 | 192 |