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{{CL
{{CL
|id=CL:0002602
|alt_id=
|name=annulus pulposus cell
|namespace=cell
|def=
|xref=
|is_a=CL:0002320
|synonym="anulus pulposus cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T06:50:53Z
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002602
|is_a=CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=annulus pulposus cell
|namespace=cell
|obo_creation_date=2011-03-06T06:50:53Z
|part_of=UBERON:0004715
|part_of=UBERON:0004715
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anulus pulposus cell" EXACT []
|union_of=
|xref=
}}
}}

Revision as of 10:30, 12 September 2014

Name:annulus pulposus cell
Namespace:cell
Synonyms: "anulus pulposus cell" EXACT []
Created by:tmeehan
Creation date:2011-03-06T06:50:53Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002320(connective tissue cell)
part_of:UBERON:0004715(annulus fibrosus disci intervertebralis)



Children


derives from:FF:0000192 (human anulus pulposus cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002602 (annulus pulposus cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.68e-99FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_6bad486854e9568bb6f112246548a82dp5@PTGFR
5.68e-99FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_6bad486854e9568bb6f112246548a82dp5@PTGFR
1.55e-98FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_5a85bf7e297e2a81490530fffa255a50p@chr13:24914614..24914622, -
1.55e-98FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_5a85bf7e297e2a81490530fffa255a50p@chr13:24914614..24914622, -
2.34e-79FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_9f9d956fed94b2731797224d99f80c73p@chr9:114135497..114135526, -
2.34e-79FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_9f9d956fed94b2731797224d99f80c73p@chr9:114135497..114135526, -
1.45e-66FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_d1299ff6c329ec81d5ccbaf3b6640147p@chr3:174737010..174737023, +
1.45e-66FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_d1299ff6c329ec81d5ccbaf3b6640147p@chr3:174737010..174737023, +
2.84e-66FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_f6971cd8fab11f943bf86e7955518a11p@chr2:241897189..241897221, -
2.84e-66FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_f6971cd8fab11f943bf86e7955518a11p@chr2:241897189..241897221, -
1.13e-57FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_6c678099fa4278b952fbde74ad4e4e62p4@PAX1
1.13e-57FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_6c678099fa4278b952fbde74ad4e4e62p@chr10:81923378..81923389, -
1.13e-57FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_6c678099fa4278b952fbde74ad4e4e62p4@PAX1
1.13e-57FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_6c678099fa4278b952fbde74ad4e4e62p3@PAX1
1.13e-57FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_6c678099fa4278b952fbde74ad4e4e62p3@PAX1
1.13e-57FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_6c678099fa4278b952fbde74ad4e4e62p@chr10:81923378..81923389, -
1.14e-50FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_abcafec17f1cd593b82b25ae0be70223p3@NKX3-2
1.14e-50FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_abcafec17f1cd593b82b25ae0be70223p3@NKX3-2
1.46e-50FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_8055f7fa4d5e033af2e77c95470eca08p4@NKX3-2
1.46e-50FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_8055f7fa4d5e033af2e77c95470eca08p4@NKX3-2
2.74e-50FFCP PHASE1:Hg19::chr16:4421890..4421912,-#_a33c66b3288bfd7136aa72a37257cef5p@chr16:4421890..4421912, -
2.74e-50FFCP PHASE2:Hg19::chr16:4421890..4421912,-#_a33c66b3288bfd7136aa72a37257cef5p@chr16:4421890..4421912, -
3.19e-45FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_07d28fe1088a54b6a677eff0f9fdee7ep@chr2:241897125..241897142, -
3.19e-45FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_07d28fe1088a54b6a677eff0f9fdee7ep@chr2:241897125..241897142, -
1.22e-44FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_ebd655fe35fce0b5e81de6c52525b4dep@chr3:80727046..80727051, -
1.22e-44FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_ebd655fe35fce0b5e81de6c52525b4dep@chr3:80727046..80727051, -
5.99e-41FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_78d623638e598ddb105f4babdbbc3b37p@chr5:30104176..30104187, -
5.99e-41FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_78d623638e598ddb105f4babdbbc3b37p@chr5:30104176..30104187, -
3.01e-40FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_7c2754986c5f2b08911139ca375ad7ccp@chr1:19778678..19778689, -
3.01e-40FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_7c2754986c5f2b08911139ca375ad7ccp@chr1:19778678..19778689, -
1.3e-37FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_5561d9f9a1601db002a7814fab84f07fp@chr20:21695435..21695452, +
1.3e-37FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_5561d9f9a1601db002a7814fab84f07fp@chr20:21695435..21695452, +
3.94e-37FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_25d762b3e8b9fc49848c0e1048316247p@chr16:70795228..70795237, +
3.94e-37FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_25d762b3e8b9fc49848c0e1048316247p@chr16:70795228..70795237, +
8.2e-37FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_bce6562018a4a9e845b06d275a6fa670p1@uc010aki.1
8.2e-37FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_bce6562018a4a9e845b06d275a6fa670p1@uc010aki.1
1.18e-36FFCP PHASE2:Hg19::chr8:27455513..27455516,+#_0d782da08e395f1f84e03b6db01ee27ep7@CU679734
1.18e-36FFCP PHASE1:Hg19::chr8:27455513..27455516,+#_0d782da08e395f1f84e03b6db01ee27ep7@CU679734
7.05e-34FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_8d2492c84b9a7c8472a8e0d1c6e9d1c1p3@uc010aki.1
7.05e-34FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_8d2492c84b9a7c8472a8e0d1c6e9d1c1p3@uc010aki.1
8.05e-30FFCP PHASE1:Hg19::chr11:66724317..66724340,-#_1948e94a520aac2226c0e6487a11cf0fp@chr11:66724317..66724340, -
8.05e-30FFCP PHASE2:Hg19::chr11:66724317..66724340,-#_1948e94a520aac2226c0e6487a11cf0fp@chr11:66724317..66724340, -
2.22e-29FFCP PHASE2:Hg19::chr2:53161632..53161661,-#_4d8a1ca73614a2a6c17c5965c19eeac5p@chr2:53161632..53161661, -
2.22e-29FFCP PHASE1:Hg19::chr2:53161632..53161661,-#_4d8a1ca73614a2a6c17c5965c19eeac5p@chr2:53161632..53161661, -
5.41e-28FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_fe472a97660c94477b0a0c0e403597e9p15@SNED1
5.41e-28FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_fe472a97660c94477b0a0c0e403597e9p15@SNED1
7.1e-28FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_18848e9b37efa8afbe6cf93cd8ff81b8p20@CAPZB
7.1e-28FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_18848e9b37efa8afbe6cf93cd8ff81b8p20@CAPZB
2.09e-27FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_459941a1ec51e499e7a886ce96f7c47ep@chr8:25337491..25337504, +
2.09e-27FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_459941a1ec51e499e7a886ce96f7c47ep@chr8:25337491..25337504, +
3.59e-26FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_7aa866bd1d121df86da6ad3ed53bc53ap@chr2:241897363..241897398, +
3.59e-26FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_7aa866bd1d121df86da6ad3ed53bc53ap@chr2:241897363..241897398, +
3.89e-25FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_df879df294209da6d5fc586e96ffa381p10@SYNJ2
3.89e-25FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_df879df294209da6d5fc586e96ffa381p10@SYNJ2
5.58e-25FFCP PHASE2:Hg19::chr7:18832801..18832816,+#_dc58ea0b0cefd2be69cd3d060f03f148p21@HDAC9
5.58e-25FFCP PHASE1:Hg19::chr7:18832801..18832816,+#_dc58ea0b0cefd2be69cd3d060f03f148p21@HDAC9
1.02e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_2ace2762f4fd3494e4d9b4664bee3cf7p@chr9:16138889..16138902, -
1.02e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_2ace2762f4fd3494e4d9b4664bee3cf7p@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_42bf5340d1d395e8f9a23b244557644fp@chr2:241938405..241938416, +
1.45e-24FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_42bf5340d1d395e8f9a23b244557644fp@chr2:241938405..241938416, +
2.34e-24FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_5ec00a481689709b1c1ea5cbbaa466f7p2@ENST00000518706
2.34e-24FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_5ec00a481689709b1c1ea5cbbaa466f7p2@ENST00000518706
6.77e-24FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_9efbdd6f6ce91ad88e90606e1f6f3654p1@ENST00000436845
6.77e-24FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_9efbdd6f6ce91ad88e90606e1f6f3654p1@ENST00000436845
8.02e-24FFCP PHASE2:Hg19::chr17:38655950..38655954,+#_cb0da79b103be8db3c4d7ef92442370fp@chr17:38655950..38655954, +
8.02e-24FFCP PHASE1:Hg19::chr17:38655950..38655954,+#_cb0da79b103be8db3c4d7ef92442370fp@chr17:38655950..38655954, +
1.13e-23FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_6eb6638b0a880f3e5fbe36d95bfc65efp6@SIX4
1.13e-23FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_6eb6638b0a880f3e5fbe36d95bfc65efp6@SIX4
1.78e-23FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_d7dacda148c9f54a70a1922796fb81a8p1@ENST00000413519
1.78e-23FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_d7dacda148c9f54a70a1922796fb81a8p1@ENST00000413519
1.14e-21FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_dfd81bb7c713f410feb559ab4a3dede0p6@CCDC86
1.14e-21FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_dfd81bb7c713f410feb559ab4a3dede0p6@CCDC86
1.53e-21FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_69b8e3b14b65ce0bf3911dece708babap19@HDAC9
1.53e-21FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_69b8e3b14b65ce0bf3911dece708babap19@HDAC9
3.47e-21FFCP PHASE2:Hg19::chr20:30181389..30181408,+#_90668e841f9674bfffe533dd0043a65dp@chr20:30181389..30181408, +
3.47e-21FFCP PHASE1:Hg19::chr20:30181389..30181408,+#_90668e841f9674bfffe533dd0043a65dp@chr20:30181389..30181408, +
3.81e-21FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_ebad9c76a7b8dc1a83a33e8a898ba944p@chr3:158384350..158384362, -
3.81e-21FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_ebad9c76a7b8dc1a83a33e8a898ba944p@chr3:158384350..158384362, -
4.66e-21FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_b57aa0f3466b4742c3ceb42b3103e511p@chr18:12012068..12012098, +
4.66e-21FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_b57aa0f3466b4742c3ceb42b3103e511p@chr18:12012068..12012098, +
5.2e-21FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_66fcf52cefab61f86d1cd9707450556dp@chr7:158224707..158224729, -
5.2e-21FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_66fcf52cefab61f86d1cd9707450556dp@chr7:158224707..158224729, -
6.96e-21FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_a9101b32af90236fb98c78e50541e54fp9@CYTIP
6.96e-21FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_a9101b32af90236fb98c78e50541e54fp9@CYTIP
6.96e-21FFCP PHASE2:Hg19::chr11:108743668..108743675,+#_a9101b32af90236fb98c78e50541e54fp@chr11:108743668..108743675, +
6.96e-21FFCP PHASE1:Hg19::chr11:108743668..108743675,+#_a9101b32af90236fb98c78e50541e54fp@chr11:108743668..108743675, +
8.49e-21FFCP PHASE1:Hg19::chr6:158490395..158490407,+#_89a01f53b74f57bd2dc0515c52f366f6p9@SYNJ2
8.49e-21FFCP PHASE2:Hg19::chr6:158490395..158490407,+#_89a01f53b74f57bd2dc0515c52f366f6p9@SYNJ2
2.74e-20FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_a7520049e2b4acca3266a0e13cd7b384p@chr1:65888177..65888194, +
2.74e-20FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_a7520049e2b4acca3266a0e13cd7b384p@chr1:65888177..65888194, +
1.64e-19FFCP PHASE2:Hg19::chr19:14223369..14223385,-#_127d6b801ba87dde564c96b0127a542bp5@PRKACA
1.64e-19FFCP PHASE1:Hg19::chr19:14223369..14223385,-#_127d6b801ba87dde564c96b0127a542bp5@PRKACA
2.38e-19FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_a5cd53bb69b0b5f71557f746933ef32bp34@LPAR1
2.38e-19FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_a5cd53bb69b0b5f71557f746933ef32bp34@LPAR1
4.53e-19FFCP PHASE1:Hg19::chr17:73688878..73688882,+#_bbd38a693ed98a109b80fdb33447d125p@chr17:73688878..73688882, +
4.53e-19FFCP PHASE2:Hg19::chr17:73688878..73688882,+#_bbd38a693ed98a109b80fdb33447d125p@chr17:73688878..73688882, +
6.53e-19FFCP PHASE2:Hg19::chr3:58572689..58572703,-#_44282129a6fcdb6b3b0857304ab5f9e1p6@FAM107A
6.53e-19FFCP PHASE1:Hg19::chr3:58572689..58572703,-#_44282129a6fcdb6b3b0857304ab5f9e1p6@FAM107A
7.03e-19FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_0ba047e65c4d875c435f61d86a2acd6bp1@MGC27382
7.03e-19FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_0ba047e65c4d875c435f61d86a2acd6bp1@MGC27382

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