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{{UBERON
{{UBERON
|id=UBERON:0001962
|alt_id=UBERON:FMA_62820-MA_0000136
|name=gut-associated lymphoid tissue
|namespace=
|def="Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
|xref=FMA:62820;;MA:0000136;;ncithesaurus:Gut_Associated_Lymphoid_Tissue
|is_a=UBERON:0001961;;UBERON:0004119
|synonym="GALT" RELATED [];;"gut associated lymphoid tissue" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_62820-MA_0000136
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001962
|is_a=UBERON:0001961
|is_obsolete=
|located_in=
|located_in=
|name=gut-associated lymphoid tissue
|namespace=
|obo_creation_date=
|part_of=UBERON:0001555
|part_of=UBERON:0001555
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="GALT" RELATED [];;"gut associated lymphoid tissue" EXACT []
|union_of=
|xref=FMA:62820;;MA:0000136;;ncithesaurus:Gut_Associated_Lymphoid_Tissue
}}
}}

Revision as of 11:08, 12 September 2014

Name:gut-associated lymphoid tissue
Definition:"Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
Xrefs:
links:

FMA:62820
MA:0000136

ncithesaurus:Gut_Associated_Lymphoid_Tissue
Synonyms: "GALT" RELATED []
"gut associated lymphoid tissue" EXACT []
Alt_id: UBERON:FMA_62820-MA_0000136
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001961(mucosa-associated lymphoid tissue)
part_of:UBERON:0001555(digestive tract)



Children

is a:UBERON:0001735 (tonsillar ring),UBERON:0002372 (tonsil)
derives from:FF:0011473 (mouse Follicle Associated Epithelium sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001962 (gut-associated lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_c13650ef59809a46b1740a1319424483p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_c13650ef59809a46b1740a1319424483p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_c13650ef59809a46b1740a1319424483p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_c13650ef59809a46b1740a1319424483p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_c13650ef59809a46b1740a1319424483p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_c13650ef59809a46b1740a1319424483p@chr12:115974938..115974945, -
1.87e-86FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_c13650ef59809a46b1740a1319424483p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_c13650ef59809a46b1740a1319424483p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_c13650ef59809a46b1740a1319424483p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_c13650ef59809a46b1740a1319424483p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_c13650ef59809a46b1740a1319424483p1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_c13650ef59809a46b1740a1319424483p@chr12:115974938..115974945, -
1.87e-86FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_c13650ef59809a46b1740a1319424483p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_c13650ef59809a46b1740a1319424483p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_c13650ef59809a46b1740a1319424483p@chr9:69086930..69086933, +
1.87e-86FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_c13650ef59809a46b1740a1319424483p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_c13650ef59809a46b1740a1319424483p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_c13650ef59809a46b1740a1319424483p1@ENSMUST00000114212
1.87e-86FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_c13650ef59809a46b1740a1319424483p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_c13650ef59809a46b1740a1319424483p@chr9:69086930..69086933, +
1.87e-86FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_c13650ef59809a46b1740a1319424483p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_c13650ef59809a46b1740a1319424483p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_c13650ef59809a46b1740a1319424483p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_c13650ef59809a46b1740a1319424483p@chr17:59564142..59564144, +
1.68e-58FFCP PHASE2:Mm9::chr2:45535559..45535562,+#_05c5f8da60ffa7f44123d4a80c842124p@chr2:45535559..45535562, +
1.68e-58FFCP PHASE1:Mm9::chr6:143591339..143591345,+#_05c5f8da60ffa7f44123d4a80c842124p@chr6:143591339..143591345, +
1.68e-58FFCP PHASE1:Mm9::chr11:42881914..42881920,+#_05c5f8da60ffa7f44123d4a80c842124p@chr11:42881914..42881920, +
1.68e-58FFCP PHASE2:Mm9::chr12:115366227..115366256,-#_05c5f8da60ffa7f44123d4a80c842124p@chr12:115366227..115366256, -
1.68e-58FFCP PHASE2:Mm9::chr1:40599829..40599836,+#_05c5f8da60ffa7f44123d4a80c842124p@chr1:40599829..40599836, +
1.68e-58FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_05c5f8da60ffa7f44123d4a80c842124p@chr16:15705318..15705342, +
1.68e-58FFCP PHASE2:Mm9::chr6:143591339..143591345,+#_05c5f8da60ffa7f44123d4a80c842124p@chr6:143591339..143591345, +
1.68e-58FFCP PHASE1:Mm9::chr6:28646564..28646565,-#_05c5f8da60ffa7f44123d4a80c842124p@chr6:28646564..28646565, -
1.68e-58FFCP PHASE1:Mm9::chr8:25523566..25523573,+#_05c5f8da60ffa7f44123d4a80c842124p@chr8:25523566..25523573, +
1.68e-58FFCP PHASE1:Mm9::chr12:115366227..115366256,-#_05c5f8da60ffa7f44123d4a80c842124p@chr12:115366227..115366256, -
1.68e-58FFCP PHASE2:Mm9::chr19:32143349..32143352,-#_05c5f8da60ffa7f44123d4a80c842124p@chr19:32143349..32143352, -
1.68e-58FFCP PHASE1:Mm9::chr19:32143349..32143352,-#_05c5f8da60ffa7f44123d4a80c842124p@chr19:32143349..32143352, -
1.68e-58FFCP PHASE2:Mm9::chr6:28646564..28646565,-#_05c5f8da60ffa7f44123d4a80c842124p@chr6:28646564..28646565, -
1.68e-58FFCP PHASE1:Mm9::chr2:45535559..45535562,+#_05c5f8da60ffa7f44123d4a80c842124p@chr2:45535559..45535562, +
1.68e-58FFCP PHASE2:Mm9::chr16:15705318..15705342,+#_05c5f8da60ffa7f44123d4a80c842124p@chr16:15705318..15705342, +
1.68e-58FFCP PHASE2:Mm9::chr11:42881914..42881920,+#_05c5f8da60ffa7f44123d4a80c842124p@chr11:42881914..42881920, +
1.68e-58FFCP PHASE1:Mm9::chr1:40599829..40599836,+#_05c5f8da60ffa7f44123d4a80c842124p@chr1:40599829..40599836, +
1.68e-58FFCP PHASE2:Mm9::chr8:25523566..25523573,+#_05c5f8da60ffa7f44123d4a80c842124p@chr8:25523566..25523573, +
3.28e-58FFCP PHASE2:Mm9::chr2:21228521..21228523,+#_48ca9507b75c028b8615f9f63970b641p@chr2:21228521..21228523, +
3.28e-58FFCP PHASE1:Mm9::chr2:21228521..21228523,+#_48ca9507b75c028b8615f9f63970b641p@chr2:21228521..21228523, +
6.41e-58FFCP PHASE2:Mm9::chr8:107279610..107279613,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr8:107279610..107279613, +
6.41e-58FFCP PHASE2:Mm9::chr7:151964837..151964841,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr7:151964837..151964841, -
6.41e-58FFCP PHASE2:Mm9::chr6:115894954..115894961,+#_ce0b4ae4a2dc895e4f84885797d57ea8p1@H1foo
6.41e-58FFCP PHASE2:Mm9::chr14:11955268..11955270,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr14:11955268..11955270, +
6.41e-58FFCP PHASE1:Mm9::chr8:107279610..107279613,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr8:107279610..107279613, +
6.41e-58FFCP PHASE1:Mm9::chr12:114598121..114598167,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr12:114598121..114598167, +
6.41e-58FFCP PHASE1:Mm9::chr19:44484947..44484956,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr19:44484947..44484956, -
6.41e-58FFCP PHASE1:Mm9::chr7:151964837..151964841,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr7:151964837..151964841, -
6.41e-58FFCP PHASE1:Mm9::chr6:115894954..115894961,+#_ce0b4ae4a2dc895e4f84885797d57ea8p1@H1foo
6.41e-58FFCP PHASE2:Mm9::chr19:44484947..44484956,-#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr19:44484947..44484956, -
6.41e-58FFCP PHASE1:Mm9::chr14:11955268..11955270,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr14:11955268..11955270, +
6.41e-58FFCP PHASE2:Mm9::chr12:114598121..114598167,+#_ce0b4ae4a2dc895e4f84885797d57ea8p@chr12:114598121..114598167, +
1.66e-44FFCP PHASE1:Mm9::chr6:92256099..92256107,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr6:92256099..92256107, +
1.66e-44FFCP PHASE1:Mm9::chr12:117248348..117248352,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc011yvj.1
1.66e-44FFCP PHASE2:Mm9::chr12:115694343..115694368,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc007pgz.1
1.66e-44FFCP PHASE2:Mm9::chr2:172818218..172818220,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr2:172818218..172818220, +
1.66e-44FFCP PHASE1:Mm9::chr12:114545296..114545316,-#_fa2e87e05135f7d9b37c3ddb8cb57657p2@uc007pgn.1
1.66e-44FFCP PHASE2:Mm9::chrX:84015807..84015814,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chrX:84015807..84015814, +
1.66e-44FFCP PHASE1:Mm9::chrX:84015807..84015814,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chrX:84015807..84015814, +
1.66e-44FFCP PHASE1:Mm9::chr12:115694343..115694368,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc007pgz.1
1.66e-44FFCP PHASE2:Mm9::chr6:92256099..92256107,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr6:92256099..92256107, +
1.66e-44FFCP PHASE2:Mm9::chr12:117248348..117248352,-#_fa2e87e05135f7d9b37c3ddb8cb57657p1@uc011yvj.1
1.66e-44FFCP PHASE2:Mm9::chr19:32144164..32144171,-#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr19:32144164..32144171, -
1.66e-44FFCP PHASE1:Mm9::chr19:32144164..32144171,-#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr19:32144164..32144171, -
1.66e-44FFCP PHASE2:Mm9::chr12:114545296..114545316,-#_fa2e87e05135f7d9b37c3ddb8cb57657p2@uc007pgn.1
1.66e-44FFCP PHASE1:Mm9::chr2:172818218..172818220,+#_fa2e87e05135f7d9b37c3ddb8cb57657p@chr2:172818218..172818220, +
2.75e-44FFCP PHASE1:Mm9::chr14:120118559..120118564,+#_d81fbc1b486d68a8e6373c179aa7bb3bp@chr14:120118559..120118564, +
2.75e-44FFCP PHASE2:Mm9::chr14:120118559..120118564,+#_d81fbc1b486d68a8e6373c179aa7bb3bp@chr14:120118559..120118564, +
4.52e-44FFCP PHASE2:Mm9::chr5:41641845..41641846,+#_33449f409642c7a55f4cdb7d33d18cd5p@chr5:41641845..41641846, +
4.52e-44FFCP PHASE1:Mm9::chr5:41641845..41641846,+#_33449f409642c7a55f4cdb7d33d18cd5p@chr5:41641845..41641846, +
4.55e-44FFCP PHASE2:Mm9::chr12:114546123..114546134,-#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114546123..114546134, -
4.55e-44FFCP PHASE2:Mm9::chr13:101017287..101017298,-#_54c69a5664f80c5e0fb7627c7be159f3p1@Naip5
4.55e-44FFCP PHASE1:Mm9::chr13:101017287..101017298,-#_54c69a5664f80c5e0fb7627c7be159f3p1@Naip5
4.55e-44FFCP PHASE1:Mm9::chr12:114498371..114498382,+#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114498371..114498382, +
4.55e-44FFCP PHASE1:Mm9::chr12:114546123..114546134,-#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114546123..114546134, -
4.55e-44FFCP PHASE2:Mm9::chr12:114498371..114498382,+#_54c69a5664f80c5e0fb7627c7be159f3p@chr12:114498371..114498382, +
7.52e-44FFCP PHASE2:Mm9::chr12:114498387..114498408,+#_2e2c54a7c863afc94ca01b1a93377067p@chr12:114498387..114498408, +
7.52e-44FFCP PHASE2:Mm9::chr12:116073906..116073921,-#_2e2c54a7c863afc94ca01b1a93377067p@chr12:116073906..116073921, -
7.52e-44FFCP PHASE1:Mm9::chr7:18931147..18931163,-#_2e2c54a7c863afc94ca01b1a93377067p@chr7:18931147..18931163, -
7.52e-44FFCP PHASE1:Mm9::chr12:114498387..114498408,+#_2e2c54a7c863afc94ca01b1a93377067p@chr12:114498387..114498408, +
7.52e-44FFCP PHASE1:Mm9::chr12:116073906..116073921,-#_2e2c54a7c863afc94ca01b1a93377067p@chr12:116073906..116073921, -
7.52e-44FFCP PHASE2:Mm9::chr7:18931147..18931163,-#_2e2c54a7c863afc94ca01b1a93377067p@chr7:18931147..18931163, -
1.24e-43FFCP PHASE1:Mm9::chr6:92399181..92399191,+#_8e0d80dc6fc50c6494d1b11a38c8ad43p@chr6:92399181..92399191, +
1.24e-43FFCP PHASE2:Mm9::chr6:92399181..92399191,+#_8e0d80dc6fc50c6494d1b11a38c8ad43p@chr6:92399181..92399191, +
4.23e-36FFCP PHASE1:Mm9::chr13:100355619..100355622,-#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr13:100355619..100355622, -
4.23e-36FFCP PHASE1:Mm9::chr3:146041906..146041910,-#_51b7846ff1e73c511e0ad0c3577ca6c7p1@Gm10636
4.23e-36FFCP PHASE1:Mm9::chr17:88262759..88262764,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr17:88262759..88262764, +
4.23e-36FFCP PHASE2:Mm9::chr13:100355619..100355622,-#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr13:100355619..100355622, -
4.23e-36FFCP PHASE1:Mm9::chr8:24347491..24347492,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr8:24347491..24347492, +
4.23e-36FFCP PHASE1:Mm9::chr14:120893824..120893825,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr14:120893824..120893825, +
4.23e-36FFCP PHASE2:Mm9::chr8:24347491..24347492,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr8:24347491..24347492, +
4.23e-36FFCP PHASE2:Mm9::chr3:146041906..146041910,-#_51b7846ff1e73c511e0ad0c3577ca6c7p1@Gm10636
4.23e-36FFCP PHASE2:Mm9::chr14:120893824..120893825,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr14:120893824..120893825, +
4.23e-36FFCP PHASE2:Mm9::chr17:88262759..88262764,+#_51b7846ff1e73c511e0ad0c3577ca6c7p@chr17:88262759..88262764, +
9.52e-36FFCP PHASE1:Mm9::chr3:34057648..34057650,+#_7d3aa55c7a5dc47e3d12af677db9c283p@chr3:34057648..34057650, +
9.52e-36FFCP PHASE2:Mm9::chr3:34057648..34057650,+#_7d3aa55c7a5dc47e3d12af677db9c283p@chr3:34057648..34057650, +

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