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{{UBERON
{{UBERON
|id=UBERON:0010881
|alt_id=
|name=limb bone cartilaginous condensation
|namespace=
|def=
|xref=
|is_a=UBERON:0005863
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0010882
|develops_from=UBERON:0010882
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010881
|is_a=UBERON:0005863 ;;UBERON:0009749 ;;UBERON:0015061
|is_obsolete=
|located_in=
|located_in=
|name=limb bone cartilaginous condensation
|namespace=
|obo_creation_date=
|part_of=UBERON:0002091
|part_of=UBERON:0002091
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 11:51, 12 September 2014

Name:limb bone cartilaginous condensation

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005863(cartilaginous condensation),UBERON:0009749(limb mesenchyme),UBERON:0015061(limb endochondral element)
develops_from:UBERON:0010882(limb bone pre-cartilage condensation)
part_of:UBERON:0002091(appendicular skeleton)



Children

is a:UBERON:0010129 (femur cartilage element)
develops from:UBERON:0002428 (limb bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010881 (limb bone cartilaginous condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b3d57bd630d68877a1cb10b1de18e921p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b3d57bd630d68877a1cb10b1de18e921p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_bd62c2733e68e3ae2e17953da0a24e52p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_bd62c2733e68e3ae2e17953da0a24e52p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_bd62c2733e68e3ae2e17953da0a24e52p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_bd62c2733e68e3ae2e17953da0a24e52p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_bd62c2733e68e3ae2e17953da0a24e52p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_bd62c2733e68e3ae2e17953da0a24e52p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_6074bf38213171ad4cbaacb62e4f57bdp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_6074bf38213171ad4cbaacb62e4f57bdp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_732c86bb7afe63f06245056da5163715p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_732c86bb7afe63f06245056da5163715p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_1fc0b5e5dae2806075b171d68879dbe1p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_1fc0b5e5dae2806075b171d68879dbe1p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_1fc0b5e5dae2806075b171d68879dbe1p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_1fc0b5e5dae2806075b171d68879dbe1p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_1fc0b5e5dae2806075b171d68879dbe1p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_1fc0b5e5dae2806075b171d68879dbe1p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_1fc0b5e5dae2806075b171d68879dbe1p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_1fc0b5e5dae2806075b171d68879dbe1p@chr6:4490674..4490679, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_9758fd3f274f25b1aabf5b7f4bf3889cp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_9758fd3f274f25b1aabf5b7f4bf3889cp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_44cc36bc8ba433c02f0ea1a8aac0fad9p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_44cc36bc8ba433c02f0ea1a8aac0fad9p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_6a90bba619e70fd277aca2291f9ed359p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_6a90bba619e70fd277aca2291f9ed359p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_003658d1cd467c61577be4afbc3c3e17p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_003658d1cd467c61577be4afbc3c3e17p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_337b601d01db4a09b2db61b6b6b46524p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_337b601d01db4a09b2db61b6b6b46524p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_f214e7faf1443ef1e454df992211381fp2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_f214e7faf1443ef1e454df992211381fp2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_c3f6044c7fdd7cf294af06cb3505fe6cp3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_c3f6044c7fdd7cf294af06cb3505fe6cp3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_0c8b3d07af9d63de0e813adde023de99p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_0c8b3d07af9d63de0e813adde023de99p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_0c8b3d07af9d63de0e813adde023de99p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_0c8b3d07af9d63de0e813adde023de99p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_568a8f761be55c65b5825609a71fc332p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_568a8f761be55c65b5825609a71fc332p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_568a8f761be55c65b5825609a71fc332p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_568a8f761be55c65b5825609a71fc332p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_2b7faaca6d7686d1c6bb43c8f463415bp6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_2b7faaca6d7686d1c6bb43c8f463415bp6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_f229a0f51509ed690422001b83808bedp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_f229a0f51509ed690422001b83808bedp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_f229a0f51509ed690422001b83808bedp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_f229a0f51509ed690422001b83808bedp@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_be6399e3539f72392b681c65c46fb748p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_be6399e3539f72392b681c65c46fb748p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_8aa3f4a256c73c84258827c3cc2a0483p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_8aa3f4a256c73c84258827c3cc2a0483p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_8aa3f4a256c73c84258827c3cc2a0483p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_8aa3f4a256c73c84258827c3cc2a0483p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_29f3ec3c26dddcdb3b91491e4ba13343p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_29f3ec3c26dddcdb3b91491e4ba13343p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_9274c8f2350760bee12c0da5126abe47p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_9274c8f2350760bee12c0da5126abe47p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_569d8adb7f0c1a5a1bb6b3219a0d2231p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_569d8adb7f0c1a5a1bb6b3219a0d2231p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_f8bdeb5906b03bedff5463ec7b9005fbp@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_f8bdeb5906b03bedff5463ec7b9005fbp@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_382ce1bddc1338ad8a0f84e045272913p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_382ce1bddc1338ad8a0f84e045272913p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_382ce1bddc1338ad8a0f84e045272913p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_382ce1bddc1338ad8a0f84e045272913p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_cf04df75f10a38eeaea89c77ca10deb1p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_cf04df75f10a38eeaea89c77ca10deb1p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_cf04df75f10a38eeaea89c77ca10deb1p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_cf04df75f10a38eeaea89c77ca10deb1p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_c721c4bfe9b75fe81b7938d9be4f6b3bp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_c721c4bfe9b75fe81b7938d9be4f6b3bp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_cf1bcaf5500fa672848adb064d25825dp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_cf1bcaf5500fa672848adb064d25825dp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_2437ffa036a94d29a1f4cfb773ff33f7p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_2437ffa036a94d29a1f4cfb773ff33f7p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_dcc40358807430e599446425e4327821p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_dcc40358807430e599446425e4327821p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_98333b65fb3997e60271cd56f42a4a6fp6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_98333b65fb3997e60271cd56f42a4a6fp6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_9f4d900e93455dd2efedc77d0a363071p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_9f4d900e93455dd2efedc77d0a363071p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_fa9ab0d27f8d7c90c92aafa258d3ac70p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_fa9ab0d27f8d7c90c92aafa258d3ac70p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_fa9ab0d27f8d7c90c92aafa258d3ac70p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_fa9ab0d27f8d7c90c92aafa258d3ac70p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_b11a81e16779a5330a38a52cbf242595p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_b11a81e16779a5330a38a52cbf242595p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_08a5a92b204c9913ebfc7dd1f40eb650p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_08a5a92b204c9913ebfc7dd1f40eb650p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_3e5aa0a4048ae5c79c35bd2f88bfb028p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_3e5aa0a4048ae5c79c35bd2f88bfb028p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_3e5aa0a4048ae5c79c35bd2f88bfb028p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_3e5aa0a4048ae5c79c35bd2f88bfb028p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_0d6458f0e7875ce653bd2599ea96628bp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_0d6458f0e7875ce653bd2599ea96628bp5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_0d6458f0e7875ce653bd2599ea96628bp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_0d6458f0e7875ce653bd2599ea96628bp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_c5d5492c099c5bc01557e254eb0b18f6p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_c5d5492c099c5bc01557e254eb0b18f6p2@Siglec15

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