UBERON:0009955: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=neurogenic placode | |name=neurogenic placode | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:07, 12 September 2014
| Name: | neurogenic placode | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309] | ||
| Xrefs: |
| ||
| Synonyms: |
"neurogenic placodes" EXACT PLURAL [ZFA:0001309] "placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002546(cranial placode) |
|---|
Children
| is a: | UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_3a60b0cd6868b4b766bca2e34977f532 | p5@Fer1l6 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_3a60b0cd6868b4b766bca2e34977f532 | p7@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr4:63079735..63079745, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_3a60b0cd6868b4b766bca2e34977f532 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_3a60b0cd6868b4b766bca2e34977f532 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_3a60b0cd6868b4b766bca2e34977f532 | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Otog |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_3a60b0cd6868b4b766bca2e34977f532 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_3a60b0cd6868b4b766bca2e34977f532 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr2:53464168..53464175, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_3a60b0cd6868b4b766bca2e34977f532 | p1@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_3a60b0cd6868b4b766bca2e34977f532 | p9@Ankrd24 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_3a60b0cd6868b4b766bca2e34977f532 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr12:13508046..13508055, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_3a60b0cd6868b4b766bca2e34977f532 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_3a60b0cd6868b4b766bca2e34977f532 | p9@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_3a60b0cd6868b4b766bca2e34977f532 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_3a60b0cd6868b4b766bca2e34977f532 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_3a60b0cd6868b4b766bca2e34977f532 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_3a60b0cd6868b4b766bca2e34977f532 | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_3a60b0cd6868b4b766bca2e34977f532 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_3a60b0cd6868b4b766bca2e34977f532 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_3a60b0cd6868b4b766bca2e34977f532 | p4@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_3a60b0cd6868b4b766bca2e34977f532 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_3a60b0cd6868b4b766bca2e34977f532 | p2@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_3a60b0cd6868b4b766bca2e34977f532 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_3a60b0cd6868b4b766bca2e34977f532 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_3a60b0cd6868b4b766bca2e34977f532 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_3a60b0cd6868b4b766bca2e34977f532 | p2@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_3a60b0cd6868b4b766bca2e34977f532 | p2@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_3a60b0cd6868b4b766bca2e34977f532 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_3a60b0cd6868b4b766bca2e34977f532 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_3a60b0cd6868b4b766bca2e34977f532 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_3a60b0cd6868b4b766bca2e34977f532 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_3a60b0cd6868b4b766bca2e34977f532 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_3a60b0cd6868b4b766bca2e34977f532 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_3a60b0cd6868b4b766bca2e34977f532 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_3a60b0cd6868b4b766bca2e34977f532 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_3a60b0cd6868b4b766bca2e34977f532 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_3a60b0cd6868b4b766bca2e34977f532 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_3a60b0cd6868b4b766bca2e34977f532 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_3a60b0cd6868b4b766bca2e34977f532 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_3a60b0cd6868b4b766bca2e34977f532 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_3a60b0cd6868b4b766bca2e34977f532 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_3a60b0cd6868b4b766bca2e34977f532 | p3@Strc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_3a60b0cd6868b4b766bca2e34977f532 | p@chr4:101908153..101908163, + |
