FFCP PHASE1:Mm9::chr7:112935997..112936008,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=233651|HGNC=|MCL_coexpression_id=22|UniProt=E9PVD3|association_with_transcript=55bp_to_ENSMUST00000078482,NM_001162943,uc009izh.2,uc009izk.2_5end|description=CAGE_peak_4_at_Dchs1_5end|id=chr7:112935997..112936008,-|ontology_enrichment_celltype=CL:0000117!3.01e-12!23;CL:0000337!3.01e-12!23;CL:0000540!3.12e-09!33;CL:0000047!3.12e-09!33;CL:0000031!3.12e-09!33;CL:0000404!3.12e-09!33;CL:0000393!8.99e-09!39;CL:0000211!8.99e-09!39;CL:0002319!4.24e-07!43|ontology_enrichment_celltype_v019_2=CL:0002613,3.45e-20,3;CL:0000117,3.75e-17,23;CL:0000337,3.75e-17,23;CL:0000540,9.88e-12,33;CL:0000047,9.88e-12,33;CL:0000031,9.88e-12,33;CL:0000404,9.88e-12,33;CL:0000393,8.32e-10,39;CL:0000211,8.32e-10,39;CL:0000120,1.34e-09,3;CL:0002319,8.09e-09,43;CL:0000221,1.34e-08,44;CL:0000133,1.34e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.32e-12,5;UBERON:0002435,2.32e-12,5;UBERON:0000204,2.32e-12,5;UBERON:0010082,2.32e-12,5;UBERON:0002102,1.56e-08,7;UBERON:0004710,1.56e-08,7;UBERON:0005419,1.56e-08,7;UBERON:0005417,1.56e-08,7;UBERON:0005729,1.56e-08,7;UBERON:0002420,6.37e-08,8;UBERON:0007245,6.37e-08,8;UBERON:0010009,6.37e-08,8;UBERON:0010011,6.37e-08,8;UBERON:0000454,6.37e-08,8;UBERON:0010708,1.57e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0,1.41621522601718,2.64495489636016,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,0.622137673850866,1.89008313664367,0.841299845405528,0.571301968807607,0.220868540951614,0.857435594504678,1.24599112323707,0.919218786610021,0,0.510749352340751,0.307213066512487,1.58263545276233,2.01272815925301,2.08365348222704,0.279182999001381,0,0.45839474333043,0.589257170947335,0.569486723196412,1.4911955666024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346970653532272,0.304465478312141,0.461230994512117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.502617408451458,0,0,0.20778804455956,0.324482526135515,0.712875546952214,0,0,0,0.390361328888111,0.229902104433473,0,0.753524089178575,0.816437989815934,0.640568601424249,0.187403449119458,0,1.5089759505299,1.32374256117473,1.05570674498369,0.219195732427575,0.278047249225598,0,0.411564272815887,0.995171334092466,0,0,0,0.621377317606506,0,0.180062061461015,0.23674473558521,0,0.154267112887378,0.232533944750408,0.268273401399619,0,0,0.164167464079095,0.162137619091711,0,0,0,0.210289948564127,0.617427674275707,0,0,0.426576501070468,0.696710015581316,0.38660238396628,0.605050573870028,0,0.190225626112559,0,0.164698954724011,0.502670417600539,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.456994050438915,0,0.610953983535943,0.193952487167626,0.210407459670956,0.189709611372772,0,0,0.370191491765402,0,0,0.196558995113203,0,0,0,0,0.287696137450811,0,0.274561413188081,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0,0.757965647081939,0.325929952884052,0.339490171550376,0,0,0.238043640886014,0,0.315270288212382,0.44292937929755,0.478364305972461,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0.160550589987792,0,0,0,0.94652465824877,0,0.215423397732799,0,0,0.283076530788832,0,0,0.395287777946524,0,0,0.35613120733451,0.651547837414304,0.659880491890142,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0.36012218806262,0.646793418913773,0.643011105094777,0.177340233642274,0.178368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0.161464426695906,0.180938774784468,0,0,0,0,0,1.03193433981611,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0,0,0.790839983952838,0,0.432021363287205,0.209088296014469,0,0,0.41326727862668,0,0.129614973291793,0,0,0.598066184175915,0.165458490457098,0.388902376688095,0.387479470433193,0.337912250981556,0.234714477291508,0.2604087696879,0.104859344425711,0.241584120826006,0.288030006257865,0,0.202725215290164,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0.103787347584177,2.39414924040619,0.512200817262403,1.21553358534147,0.209613162627982,0.367687016900028,0.222246727801615,0.206035057238894,0,0.252697211763798,0.25347929989024,0,0.37456602987953,0.384150914429216,0.287177344778066,0,0.347652977834566,0,0.412085900803307,0.294397840268795,0.342869252385415,0.532427418478012,0.238436189947321,0.145346416632329,0.564656282491984,0.169229215783353,0.548783918618318,0,0.135804113845862,0,0.711810108745045,0.29551344712669,0,0,0,0.249810577937946,0.467863216890817,0.214871054048298,0.191288332068843,0,0|short_description=p4@Dchs1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:233651 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9PVD3 | |||
|association_with_transcript=55bp_to_ENSMUST00000078482,NM_001162943,uc009izh.2,uc009izk.2_5end | |||
|cluster_id=chr7:112935997..112936008,- | |||
|description=CAGE_peak_4_at_Dchs1_5end | |||
|id=chr7:112935997..112936008,- | |||
|ontology_enrichment_celltype=CL:0000117!3.01e-12!23;CL:0000337!3.01e-12!23;CL:0000540!3.12e-09!33;CL:0000047!3.12e-09!33;CL:0000031!3.12e-09!33;CL:0000404!3.12e-09!33;CL:0000393!8.99e-09!39;CL:0000211!8.99e-09!39;CL:0002319!4.24e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,3.45e-20,3;CL:0000117,3.75e-17,23;CL:0000337,3.75e-17,23;CL:0000540,9.88e-12,33;CL:0000047,9.88e-12,33;CL:0000031,9.88e-12,33;CL:0000404,9.88e-12,33;CL:0000393,8.32e-10,39;CL:0000211,8.32e-10,39;CL:0000120,1.34e-09,3;CL:0002319,8.09e-09,43;CL:0000221,1.34e-08,44;CL:0000133,1.34e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.32e-12,5;UBERON:0002435,2.32e-12,5;UBERON:0000204,2.32e-12,5;UBERON:0010082,2.32e-12,5;UBERON:0002102,1.56e-08,7;UBERON:0004710,1.56e-08,7;UBERON:0005419,1.56e-08,7;UBERON:0005417,1.56e-08,7;UBERON:0005729,1.56e-08,7;UBERON:0002420,6.37e-08,8;UBERON:0007245,6.37e-08,8;UBERON:0010009,6.37e-08,8;UBERON:0010011,6.37e-08,8;UBERON:0000454,6.37e-08,8;UBERON:0010708,1.57e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0,1.41621522601718,2.64495489636016,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,0.622137673850866,1.89008313664367,0.841299845405528,0.571301968807607,0.220868540951614,0.857435594504678,1.24599112323707,0.919218786610021,0,0.510749352340751,0.307213066512487,1.58263545276233,2.01272815925301,2.08365348222704,0.279182999001381,0,0.45839474333043,0.589257170947335,0.569486723196412,1.4911955666024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346970653532272,0.304465478312141,0.461230994512117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.502617408451458,0,0,0.20778804455956,0.324482526135515,0.712875546952214,0,0,0,0.390361328888111,0.229902104433473,0,0.753524089178575,0.816437989815934,0.640568601424249,0.187403449119458,0,1.5089759505299,1.32374256117473,1.05570674498369,0.219195732427575,0.278047249225598,0,0.411564272815887,0.995171334092466,0,0,0,0.621377317606506,0,0.180062061461015,0.23674473558521,0,0.154267112887378,0.232533944750408,0.268273401399619,0,0,0.164167464079095,0.162137619091711,0,0,0,0.210289948564127,0.617427674275707,0,0,0.426576501070468,0.696710015581316,0.38660238396628,0.605050573870028,0,0.190225626112559,0,0.164698954724011,0.502670417600539,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.456994050438915,0,0.610953983535943,0.193952487167626,0.210407459670956,0.189709611372772,0,0,0.370191491765402,0,0,0.196558995113203,0,0,0,0,0.287696137450811,0,0.274561413188081,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0,0.757965647081939,0.325929952884052,0.339490171550376,0,0,0.238043640886014,0,0.315270288212382,0.44292937929755,0.478364305972461,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0.160550589987792,0,0,0,0.94652465824877,0,0.215423397732799,0,0,0.283076530788832,0,0,0.395287777946524,0,0,0.35613120733451,0.651547837414304,0.659880491890142,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0.36012218806262,0.646793418913773,0.643011105094777,0.177340233642274,0.178368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0.161464426695906,0.180938774784468,0,0,0,0,0,1.03193433981611,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0,0,0.790839983952838,0,0.432021363287205,0.209088296014469,0,0,0.41326727862668,0,0.129614973291793,0,0,0.598066184175915,0.165458490457098,0.388902376688095,0.387479470433193,0.337912250981556,0.234714477291508,0.2604087696879,0.104859344425711,0.241584120826006,0.288030006257865,0,0.202725215290164,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0.103787347584177,2.39414924040619,0.512200817262403,1.21553358534147,0.209613162627982,0.367687016900028,0.222246727801615,0.206035057238894,0,0.252697211763798,0.25347929989024,0,0.37456602987953,0.384150914429216,0.287177344778066,0,0.347652977834566,0,0.412085900803307,0.294397840268795,0.342869252385415,0.532427418478012,0.238436189947321,0.145346416632329,0.564656282491984,0.169229215783353,0.548783918618318,0,0.135804113845862,0,0.711810108745045,0.29551344712669,0,0,0,0.249810577937946,0.467863216890817,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p4@Dchs1 | |||
}} |
Revision as of 00:09, 4 August 2015
Short description: | p4@Dchs1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dchs1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 55bp_to_ENSMUST00000078482, NM_001162943, uc009izh.2, uc009izk.2_5end |
EntrezGene: | 233651 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 3.45e-20 | 3 |
CNS neuron (sensu Vertebrata) | 3.75e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.75e-17 | 23 |
neuron | 9.88e-12 | 33 |
neuronal stem cell | 9.88e-12 | 33 |
neuroblast | 9.88e-12 | 33 |
electrically signaling cell | 9.88e-12 | 33 |
electrically responsive cell | 8.32e-10 | 39 |
electrically active cell | 8.32e-10 | 39 |
granule cell | 1.34e-09 | 3 |
neural cell | 8.09e-09 | 43 |
ectodermal cell | 1.34e-08 | 44 |
neurectodermal cell | 1.34e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 2.32e-12 | 5 |
striatum | 2.32e-12 | 5 |
ventral part of telencephalon | 2.32e-12 | 5 |
future corpus striatum | 2.32e-12 | 5 |
forelimb | 1.56e-08 | 7 |
pectoral appendage | 1.56e-08 | 7 |
pectoral appendage bud | 1.56e-08 | 7 |
forelimb bud | 1.56e-08 | 7 |
forelimb/pectoral fin field | 1.56e-08 | 7 |
basal ganglion | 6.37e-08 | 8 |
nuclear complex of neuraxis | 6.37e-08 | 8 |
aggregate regional part of brain | 6.37e-08 | 8 |
collection of basal ganglia | 6.37e-08 | 8 |
cerebral subcortex | 6.37e-08 | 8 |
pectoral complex | 1.57e-07 | 8 |