FFCP PHASE1:Mm9::chr2:156546745..156546766,+: Difference between revisions
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{{FFCP|EntrezGene=228836|HGNC=|MCL_coexpression_id=22|UniProt=E9PUF2,B1AZP2,Q3UCF7|association_with_transcript=24bp_to_ENSMUST00000109566,NM_001042488,uc008nnt.1,uc008nnu.1_5end|description=CAGE_peak_3_at_Dlgap4_5end|id=chr2:156546745..156546766,+|ontology_enrichment_celltype=CL:0000117!1.87e-09!23;CL:0000337!1.87e-09!23;CL:0000540!7.23e-07!33;CL:0000047!7.23e-07!33;CL:0000031!7.23e-07!33;CL:0000404!7.23e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.87e-09,23;CL:0000337,1.87e-09,23;CL:0000540,7.22e-07,33;CL:0000047,7.22e-07,33;CL:0000031,7.22e-07,33;CL:0000404,7.22e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.03e-18!52;UBERON:0005068!1.03e-18!52;UBERON:0006241!1.03e-18!52;UBERON:0007135!1.03e-18!52;UBERON:0001017!3.91e-17!73;UBERON:0005743!3.91e-17!73;UBERON:0000073!6.83e-17!75;UBERON:0001016!6.83e-17!75;UBERON:0000955!1.57e-16!50;UBERON:0006238!1.57e-16!50;UBERON:0003080!2.36e-16!40;UBERON:0002780!2.67e-16!39;UBERON:0001890!2.67e-16!39;UBERON:0006240!2.67e-16!39;UBERON:0002346!2.67e-16!71;UBERON:0003075!2.67e-16!71;UBERON:0007284!2.67e-16!71;UBERON:0004121!3.94e-16!102;UBERON:0000924!3.94e-16!102;UBERON:0006601!3.94e-16!102;UBERON:0003056!4.23e-16!49;UBERON:0002020!4.68e-16!34;UBERON:0002616!6.59e-16!49;UBERON:0000033!3.76e-15!63;UBERON:0002791!2.84e-14!29;UBERON:0003528!2.84e-14!29;UBERON:0001893!2.84e-14!29;UBERON:0000956!3.56e-11!21;UBERON:0001869!3.56e-11!21;UBERON:0000203!3.56e-11!21;UBERON:0002619!1.02e-08!17;UBERON:0000153!7.36e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.03e-18,52;UBERON:0005068,1.03e-18,52;UBERON:0006241,1.03e-18,52;UBERON:0007135,1.03e-18,52;UBERON:0000073,7.63e-18,54;UBERON:0002346,8.43e-18,64;UBERON:0003075,8.43e-18,64;UBERON:0007284,8.43e-18,64;UBERON:0000955,2.88e-17,47;UBERON:0006238,2.88e-17,47;UBERON:0001017,3.66e-17,73;UBERON:0004121,4.56e-17,95;UBERON:0000924,4.56e-17,95;UBERON:0006601,4.56e-17,95;UBERON:0001016,6.40e-17,75;UBERON:0002616,1.25e-16,46;UBERON:0003080,2.35e-16,40;UBERON:0002780,2.66e-16,39;UBERON:0001890,2.66e-16,39;UBERON:0006240,2.66e-16,39;UBERON:0010371,2.66e-16,73;UBERON:0003056,4.22e-16,49;UBERON:0002020,4.66e-16,34;UBERON:0010314,2.96e-15,92;UBERON:0003528,2.84e-14,29;UBERON:0002791,2.84e-14,29;UBERON:0001893,2.84e-14,29;UBERON:0000956,3.56e-11,21;UBERON:0001869,3.56e-11,21;UBERON:0000203,3.56e-11,21;UBERON:0002619,1.02e-08,17|phase1_expression=2.88267924788629,2.09385244583617,1.36499771816861,0.30246421130683,1.50268718983904,2.68606835059024,1.63528848416868,2.45334314538995,1.12630977721333,1.87251621057595,2.39705155515707,2.47293692885543,2.22560948910567,1.74840804837995,1.33243904726265,1.41732687172878,2.09868563438444,2.99689057090326,2.05671650408608,2.12194825899015,5.6128571499706,1.58865521921416,1.56719873483361,2.23989391910769,3.21172993494038,1.14846392823004,1.7230479846363,2.58565479223067,2.28028103347649,2.01624103807945,2.21730510655305,1.90509202037889,2.46025915033828,15.8481681015439,1.73310971850765,0.831173226792462,0.204169356262369,2.92972141515835,3.1253413780952,2.09409497589519,7.64700934440319,4.09827290975067,6.311634589405,2.51793635951155,3.24406179902447,2.75320128242522,9.38869613217647,3.92445281484804,4.39372365468944,6.02732687130279,6.99932108126813,0,2.18117387875057,1.45072428402269,1.68046899571232,4.3734104126111,5.73066879877513,3.6097046459421,26.7057728334669,19.0436752537932,15.2119536841483,5.08266798103698,1.77858959222228,4.94944844504769,4.94433181283487,9.2362414942993,3.59520132622086,6.91592949578798,21.8785081970888,23.0860154547191,22.2944459032465,7.14127461009509,9.05561017901615,22.6607978547665,26.6450409430697,23.8996884518605,3.30347642998166,5.87361755191863,4.91540906419979,25.4540535319274,29.1845583091687,31.2548022334056,5.862842979029,5.6276261003168,5.80633341551878,6.18720029494702,7.83044244395066,17.7079473534036,4.61929779332423,4.98772296704784,2.89864488701678,1.72084775396277,1.3599426674155,1.61910957491345,1.29955283489534,2.24013443548668,2.24711072210803,3.57903677413921,3.37721805983729,3.5333957451034,3.23939865486365,0,2.54805239706646,7.11066703153331,4.5463118612355,3.29367825117628,3.53867111510348,2.8545969929765,6.47344709117929,3.11728492036132,5.72501578328248,5.1759131313064,4.15107895060905,2.71300752994721,5.87943535678524,4.52399728786832,7.91023896749996,3.03658649531814,2.65383165584962,5.50007289821191,3.97514733228708,2.42437626567611,3.72783522436244,9.36898550436951,6.28340120440365,1.78819938646014,0.11981512450592,0.599902730993408,0.254140454146129,5.99162557619291,10.980014467647,29.7800814507489,11.8200537730748,12.5300574091862,7.2725815595846,6.65189178577806,8.35082783572594,3.6078021476927,2.77995034277042,2.73574412652416,5.72529949035896,4.36813998423599,8.64298223065676,4.67184935290717,6.87168641428411,7.55870949680614,7.40243624021858,5.17406741478031,6.89817577385095,8.32066752738405,7.03804496655795,6.1374805079721,7.78532297831674,7.661547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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:228836 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9PUF2,uniprot:B1AZP2,uniprot:Q3UCF7 | |||
|association_with_transcript=24bp_to_ENSMUST00000109566,NM_001042488,uc008nnt.1,uc008nnu.1_5end | |||
|cluster_id=chr2:156546745..156546766,+ | |||
|description=CAGE_peak_3_at_Dlgap4_5end | |||
|id=chr2:156546745..156546766,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.87e-09!23;CL:0000337!1.87e-09!23;CL:0000540!7.23e-07!33;CL:0000047!7.23e-07!33;CL:0000031!7.23e-07!33;CL:0000404!7.23e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.87e-09,23;CL:0000337,1.87e-09,23;CL:0000540,7.22e-07,33;CL:0000047,7.22e-07,33;CL:0000031,7.22e-07,33;CL:0000404,7.22e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.03e-18!52;UBERON:0005068!1.03e-18!52;UBERON:0006241!1.03e-18!52;UBERON:0007135!1.03e-18!52;UBERON:0001017!3.91e-17!73;UBERON:0005743!3.91e-17!73;UBERON:0000073!6.83e-17!75;UBERON:0001016!6.83e-17!75;UBERON:0000955!1.57e-16!50;UBERON:0006238!1.57e-16!50;UBERON:0003080!2.36e-16!40;UBERON:0002780!2.67e-16!39;UBERON:0001890!2.67e-16!39;UBERON:0006240!2.67e-16!39;UBERON:0002346!2.67e-16!71;UBERON:0003075!2.67e-16!71;UBERON:0007284!2.67e-16!71;UBERON:0004121!3.94e-16!102;UBERON:0000924!3.94e-16!102;UBERON:0006601!3.94e-16!102;UBERON:0003056!4.23e-16!49;UBERON:0002020!4.68e-16!34;UBERON:0002616!6.59e-16!49;UBERON:0000033!3.76e-15!63;UBERON:0002791!2.84e-14!29;UBERON:0003528!2.84e-14!29;UBERON:0001893!2.84e-14!29;UBERON:0000956!3.56e-11!21;UBERON:0001869!3.56e-11!21;UBERON:0000203!3.56e-11!21;UBERON:0002619!1.02e-08!17;UBERON:0000153!7.36e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.03e-18,52;UBERON:0005068,1.03e-18,52;UBERON:0006241,1.03e-18,52;UBERON:0007135,1.03e-18,52;UBERON:0000073,7.63e-18,54;UBERON:0002346,8.43e-18,64;UBERON:0003075,8.43e-18,64;UBERON:0007284,8.43e-18,64;UBERON:0000955,2.88e-17,47;UBERON:0006238,2.88e-17,47;UBERON:0001017,3.66e-17,73;UBERON:0004121,4.56e-17,95;UBERON:0000924,4.56e-17,95;UBERON:0006601,4.56e-17,95;UBERON:0001016,6.40e-17,75;UBERON:0002616,1.25e-16,46;UBERON:0003080,2.35e-16,40;UBERON:0002780,2.66e-16,39;UBERON:0001890,2.66e-16,39;UBERON:0006240,2.66e-16,39;UBERON:0010371,2.66e-16,73;UBERON:0003056,4.22e-16,49;UBERON:0002020,4.66e-16,34;UBERON:0010314,2.96e-15,92;UBERON:0003528,2.84e-14,29;UBERON:0002791,2.84e-14,29;UBERON:0001893,2.84e-14,29;UBERON:0000956,3.56e-11,21;UBERON:0001869,3.56e-11,21;UBERON:0000203,3.56e-11,21;UBERON:0002619,1.02e-08,17 | |||
|phase1_expression=2.88267924788629,2.09385244583617,1.36499771816861,0.30246421130683,1.50268718983904,2.68606835059024,1.63528848416868,2.45334314538995,1.12630977721333,1.87251621057595,2.39705155515707,2.47293692885543,2.22560948910567,1.74840804837995,1.33243904726265,1.41732687172878,2.09868563438444,2.99689057090326,2.05671650408608,2.12194825899015,5.6128571499706,1.58865521921416,1.56719873483361,2.23989391910769,3.21172993494038,1.14846392823004,1.7230479846363,2.58565479223067,2.28028103347649,2.01624103807945,2.21730510655305,1.90509202037889,2.46025915033828,15.8481681015439,1.73310971850765,0.831173226792462,0.204169356262369,2.92972141515835,3.1253413780952,2.09409497589519,7.64700934440319,4.09827290975067,6.311634589405,2.51793635951155,3.24406179902447,2.75320128242522,9.38869613217647,3.92445281484804,4.39372365468944,6.02732687130279,6.99932108126813,0,2.18117387875057,1.45072428402269,1.68046899571232,4.3734104126111,5.73066879877513,3.6097046459421,26.7057728334669,19.0436752537932,15.2119536841483,5.08266798103698,1.77858959222228,4.94944844504769,4.94433181283487,9.2362414942993,3.59520132622086,6.91592949578798,21.8785081970888,23.0860154547191,22.2944459032465,7.14127461009509,9.05561017901615,22.6607978547665,26.6450409430697,23.8996884518605,3.30347642998166,5.87361755191863,4.91540906419979,25.4540535319274,29.1845583091687,31.2548022334056,5.862842979029,5.6276261003168,5.80633341551878,6.18720029494702,7.83044244395066,17.7079473534036,4.61929779332423,4.98772296704784,2.89864488701678,1.72084775396277,1.3599426674155,1.61910957491345,1.29955283489534,2.24013443548668,2.24711072210803,3.57903677413921,3.37721805983729,3.5333957451034,3.23939865486365,0,2.54805239706646,7.11066703153331,4.5463118612355,3.29367825117628,3.53867111510348,2.8545969929765,6.47344709117929,3.11728492036132,5.72501578328248,5.1759131313064,4.15107895060905,2.71300752994721,5.87943535678524,4.52399728786832,7.91023896749996,3.03658649531814,2.65383165584962,5.50007289821191,3.97514733228708,2.42437626567611,3.72783522436244,9.36898550436951,6.28340120440365,1.78819938646014,0.11981512450592,0.599902730993408,0.254140454146129,5.99162557619291,10.980014467647,29.7800814507489,11.8200537730748,12.5300574091862,7.2725815595846,6.65189178577806,8.35082783572594,3.6078021476927,2.77995034277042,2.73574412652416,5.72529949035896,4.36813998423599,8.64298223065676,4.67184935290717,6.87168641428411,7.55870949680614,7.40243624021858,5.17406741478031,6.89817577385095,8.32066752738405,7.03804496655795,6.1374805079721,7.78532297831674,7.66154766348766,5.55611768301447,4.57778813682534,0,0.257347907114715,0.568326998791185,4.97101854085205,6.3322036194896,5.94204802821349,5.91861838963026,5.70616272067471,4.9365476123961,5.34828072925938,5.36546802799238,5.7215017759913,6.25327429671226,4.59668899421467,6.97191762094359,4.23979963533464,3.29325172936576,4.83143107537338,11.9865270681553,25.1087254205454,3.30418782983798,1.32225283331772,5.75878276445132,6.73486348395272,3.47942145569652,5.04208811558356,4.44756087689741,3.99473814836374,1.89811624617805,4.94096864172033,3.01602250560323,4.97391180102877,3.70431765526328,5.39291645192533,2.80979464837102,2.58883655230677,6.44870863240478,6.05517116831563,10.1436962105772,4.48032921259691,4.46090720485539,4.9095073923223,4.67950374719504,3.69025369949005,3.45397201251025,2.09775178667061,0.889357881261447,4.17112764290235,1.17935397067922,0.674586337154561,0.608580364165509,1.20588579876208,2.03700681425136,2.01387296215567,1.78348749452539,1.64736847912849,2.87536413054709,3.34926852901653,2.49630138491648,2.02063102357689,3.22915344339442,0.964887042726734,3.8798169934987,5.87423376488503,3.42226450528254,4.75286240170527,5.63256595892405,5.86271901046355,6.9032655856944,7.61021226645415,7.56648691709717,9.52298165489732,8.29164797018933,4.7520361267564,6.04397436530635,5.35201516751593,6.03165135757089,7.07077388964322,1.96705709207614,3.58717770196152,5.61927064957272,4.45404409050372,3.11476396215683,1.51482556322624,5.36363973007636,3.51394869866975,3.66219776145758,5.01834475700359,4.67877215573028,6.51076020814315,4.45291771842384,3.50707029493574,4.74345333535828,18.6366363524648,5.10984306749767,5.69809931735217,8.79589580509311,3.13443233647817,0,4.85561272309963,1.81394134178851,2.26326095707078,4.72483028609236,3.99665692327106,6.46070732920553,2.54473610634254,2.85197902707777,2.84433082142234,2.10837217149998,1.03135543248187,4.76615448055303,5.76195500900193,8.27895576209629,9.64516657642165,7.44828981297549,8.02659679209317,6.91105886528908,6.69822888052118,4.92810586933792,8.68511490541663,3.52845436887939,5.27636009412736,8.88054346827481,6.99629929166608,5.252383136138,5.0883678920969,2.91480836629851,6.30446026835733,1.70870880797853,5.15967169908056,4.8150577116125,2.63715839806567,2.05041341581538,1.14389086603261,0.849892149969277,1.39951452323658,1.52019971184866,7.63736494412091,4.58687190692646,4.67634774391752,4.86024033698106,4.5999425123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| |||
|short_description=p3@Dlgap4 | |||
}} |
Revision as of 09:03, 4 August 2015
Short description: | p3@Dlgap4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dlgap4_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 24bp_to_ENSMUST00000109566, NM_001042488, uc008nnt.1, uc008nnu.1_5end |
EntrezGene: | 228836 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.87e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.87e-09 | 23 |
neuron | 7.22e-07 | 33 |
neuronal stem cell | 7.22e-07 | 33 |
neuroblast | 7.22e-07 | 33 |
electrically signaling cell | 7.22e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.03e-18 | 52 |
neural rod | 1.03e-18 | 52 |
future spinal cord | 1.03e-18 | 52 |
neural keel | 1.03e-18 | 52 |
regional part of nervous system | 7.63e-18 | 54 |
neurectoderm | 8.43e-18 | 64 |
neural plate | 8.43e-18 | 64 |
presumptive neural plate | 8.43e-18 | 64 |
brain | 2.88e-17 | 47 |
future brain | 2.88e-17 | 47 |
central nervous system | 3.66e-17 | 73 |
ectoderm-derived structure | 4.56e-17 | 95 |
ectoderm | 4.56e-17 | 95 |
presumptive ectoderm | 4.56e-17 | 95 |
nervous system | 6.40e-17 | 75 |
regional part of brain | 1.25e-16 | 46 |
anterior neural tube | 2.35e-16 | 40 |
regional part of forebrain | 2.66e-16 | 39 |
forebrain | 2.66e-16 | 39 |
future forebrain | 2.66e-16 | 39 |
ecto-epithelium | 2.66e-16 | 73 |
pre-chordal neural plate | 4.22e-16 | 49 |
gray matter | 4.66e-16 | 34 |
structure with developmental contribution from neural crest | 2.96e-15 | 92 |
brain grey matter | 2.84e-14 | 29 |
regional part of telencephalon | 2.84e-14 | 29 |
telencephalon | 2.84e-14 | 29 |
cerebral cortex | 3.56e-11 | 21 |
cerebral hemisphere | 3.56e-11 | 21 |
pallium | 3.56e-11 | 21 |
regional part of cerebral cortex | 1.02e-08 | 17 |