FFCP PHASE1:Mm9::chr4:120527391..120527448,+: Difference between revisions
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{{FFCP|EntrezGene=242662|HGNC=|MCL_coexpression_id=1|UniProt=Q80U57,E9Q3D2,Q3UVX9,Q14BY7|association_with_transcript=0bp_to_ENSMUST00000071093,ENSMUST00000132895,ENSMUST00000165731,uc008unq.1,uc008unr.1_5end|description=CAGE_peak_1_at_Rims3_5end|id=chr4:120527391..120527448,+|ontology_enrichment_celltype=CL:0000540!4.94e-17!33;CL:0000047!4.94e-17!33;CL:0000031!4.94e-17!33;CL:0000404!4.94e-17!33;CL:0000221!4.25e-13!44;CL:0000133!4.25e-13!44;CL:0002319!7.38e-13!43;CL:0000117!8.37e-13!23;CL:0000337!8.37e-13!23;CL:0000393!2.27e-10!39;CL:0000211!2.27e-10!39;CL:0000055!1.79e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.72e-18,33;CL:0000047,2.72e-18,33;CL:0000031,2.72e-18,33;CL:0000404,2.72e-18,33;CL:0000221,9.25e-14,44;CL:0000133,9.25e-14,44;CL:0000117,1.02e-13,23;CL:0000337,1.02e-13,23;CL:0002319,1.68e-13,43;CL:0000393,1.47e-12,39;CL:0000211,1.47e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.82e-30!73;UBERON:0005743!6.82e-30!73;UBERON:0004121!9.66e-30!102;UBERON:0000924!9.66e-30!102;UBERON:0006601!9.66e-30!102;UBERON:0000073!1.68e-29!75;UBERON:0001016!1.68e-29!75;UBERON:0002346!1.33e-28!71;UBERON:0003075!1.33e-28!71;UBERON:0007284!1.33e-28!71;UBERON:0000033!1.54e-23!63;UBERON:0001049!2.86e-22!52;UBERON:0005068!2.86e-22!52;UBERON:0006241!2.86e-22!52;UBERON:0007135!2.86e-22!52;UBERON:0000955!1.60e-21!50;UBERON:0006238!1.60e-21!50;UBERON:0002616!7.51e-21!49;UBERON:0003056!4.58e-19!49;UBERON:0003080!9.99e-17!40;UBERON:0002020!4.17e-16!34;UBERON:0002780!5.03e-16!39;UBERON:0001890!5.03e-16!39;UBERON:0006240!5.03e-16!39;UBERON:0007811!5.19e-14!86;UBERON:0002791!3.07e-13!29;UBERON:0003528!3.07e-13!29;UBERON:0001893!3.07e-13!29;UBERON:0000153!9.98e-11!94;UBERON:0000956!1.51e-08!21;UBERON:0001869!1.51e-08!21;UBERON:0000203!1.51e-08!21;UBERON:0002619!1.45e-07!17;UBERON:0002021!8.34e-07!10;UBERON:0000411!8.34e-07!10;UBERON:0001950!8.34e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.32e-32,73;UBERON:0001016,1.94e-31,75;UBERON:0004121,4.27e-29,95;UBERON:0000924,4.27e-29,95;UBERON:0006601,4.27e-29,95;UBERON:0002346,3.97e-28,64;UBERON:0003075,3.97e-28,64;UBERON:0007284,3.97e-28,64;UBERON:0000073,1.71e-25,54;UBERON:0010371,1.47e-24,73;UBERON:0001049,1.12e-23,52;UBERON:0005068,1.12e-23,52;UBERON:0006241,1.12e-23,52;UBERON:0007135,1.12e-23,52;UBERON:0000955,1.65e-20,47;UBERON:0006238,1.65e-20,47;UBERON:0003056,3.16e-20,49;UBERON:0002616,8.40e-20,46;UBERON:0010314,2.69e-18,92;UBERON:0003080,1.08e-17,40;UBERON:0002020,5.26e-17,34;UBERON:0002780,6.17e-17,39;UBERON:0001890,6.17e-17,39;UBERON:0006240,6.17e-17,39;UBERON:0003528,6.47e-14,29;UBERON:0002791,6.47e-14,29;UBERON:0001893,6.47e-14,29;UBERON:0000956,7.20e-09,21;UBERON:0001869,7.20e-09,21;UBERON:0000203,7.20e-09,21;UBERON:0002619,8.43e-08,17;UBERON:0002021,3.10e-07,10;UBERON:0000411,3.10e-07,10;UBERON:0001950,3.10e-07,10|phase1_expression=7.20669811971573,0,0,0,0,0.16787927191189,0,2.45334314538995,1.97104211012333,1.40438715793196,0.68487187290202,0.398860794976682,1.36960583944965,0.874204024189974,5.66286595086627,2.02475267389826,0.699561878128147,0.473193248037357,1.09691546884591,0.84877930359606,12.9265801029626,0,0,0,0.45881856213434,0,0,0.215471232685889,0.190023419456374,0,0,0.635030673459631,0,0,0,0.166234645358492,0,0,0,0,0,0.683045484958446,0,0,0,0,1.56478268869608,1.52617609466313,1.09843091367236,0.58328969722285,0.139986421625363,0,0.167782606057736,0.725362142011344,2.01656279485478,0,0,0,43.4980390848135,59.2469896784677,38.0298842103708,1.35537812827653,0,5.84934816232909,3.9554654502679,5.6838409195688,2.09720077362883,4.99483796918021,5.49554945234932,6.61529097825284,5.8890989178387,49.7032712862618,43.2902340265163,16.6587486932338,11.0222291670972,18.3843757322004,214.725967948808,104.958991906024,108.446212478908,60.0082609172382,51.6905186353615,48.4449434617787,71.7500307433549,91.7303054351638,71.8151764551008,57.4525741673652,46.4131679405076,60.2070210015721,0.908714319998209,3.55186332501892,0.289864488701678,0,0,0.539703191637817,0,0,3.7919993435573,0,0,0,6.61964072950398,0,0,0,0.432982082022428,1.01343946190039,0,3.08296475241462,0.258937883647172,9.94562331734326,7.45986905094384,7.61163695780353,6.22661842591358,9.19408107370998,6.34979018532806,4.39833069653864,0.247194967734374,0.578397427679647,6.19227386364912,0.647067399789637,0.662524555381181,0.484875253135222,0,56.7994746202401,90.0620839297857,0.255457055208591,0.479260498023681,0,0,124.326230706003,53.0700699269607,52.2722104789516,68.4867821557569,42.7044813741652,127.58185935957,66.1944353316451,0.509196819251581,0.746441823660558,0,3.36706969418358,2.21204753036596,7.58676944630461,7.74267158163002,8.43946979880004,11.9063873514824,6.79002717509704,9.27647073141315,7.76110112217047,0.862271971731369,0.189106080167819,1.05570674498369,0.43839146485515,0.278047249225598,0,0,1.19420560091096,0,0,0,2.48550927042602,2.34526059981096,0.540186184383045,0.946978942340841,0.196764231747404,0,0,0,0.2335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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:242662 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80U57,uniprot:E9Q3D2,uniprot:Q3UVX9,uniprot:Q14BY7 | |||
|association_with_transcript=0bp_to_ENSMUST00000071093,ENSMUST00000132895,ENSMUST00000165731,uc008unq.1,uc008unr.1_5end | |||
|cluster_id=chr4:120527391..120527448,+ | |||
|description=CAGE_peak_1_at_Rims3_5end | |||
|id=chr4:120527391..120527448,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.94e-17!33;CL:0000047!4.94e-17!33;CL:0000031!4.94e-17!33;CL:0000404!4.94e-17!33;CL:0000221!4.25e-13!44;CL:0000133!4.25e-13!44;CL:0002319!7.38e-13!43;CL:0000117!8.37e-13!23;CL:0000337!8.37e-13!23;CL:0000393!2.27e-10!39;CL:0000211!2.27e-10!39;CL:0000055!1.79e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.72e-18,33;CL:0000047,2.72e-18,33;CL:0000031,2.72e-18,33;CL:0000404,2.72e-18,33;CL:0000221,9.25e-14,44;CL:0000133,9.25e-14,44;CL:0000117,1.02e-13,23;CL:0000337,1.02e-13,23;CL:0002319,1.68e-13,43;CL:0000393,1.47e-12,39;CL:0000211,1.47e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.82e-30!73;UBERON:0005743!6.82e-30!73;UBERON:0004121!9.66e-30!102;UBERON:0000924!9.66e-30!102;UBERON:0006601!9.66e-30!102;UBERON:0000073!1.68e-29!75;UBERON:0001016!1.68e-29!75;UBERON:0002346!1.33e-28!71;UBERON:0003075!1.33e-28!71;UBERON:0007284!1.33e-28!71;UBERON:0000033!1.54e-23!63;UBERON:0001049!2.86e-22!52;UBERON:0005068!2.86e-22!52;UBERON:0006241!2.86e-22!52;UBERON:0007135!2.86e-22!52;UBERON:0000955!1.60e-21!50;UBERON:0006238!1.60e-21!50;UBERON:0002616!7.51e-21!49;UBERON:0003056!4.58e-19!49;UBERON:0003080!9.99e-17!40;UBERON:0002020!4.17e-16!34;UBERON:0002780!5.03e-16!39;UBERON:0001890!5.03e-16!39;UBERON:0006240!5.03e-16!39;UBERON:0007811!5.19e-14!86;UBERON:0002791!3.07e-13!29;UBERON:0003528!3.07e-13!29;UBERON:0001893!3.07e-13!29;UBERON:0000153!9.98e-11!94;UBERON:0000956!1.51e-08!21;UBERON:0001869!1.51e-08!21;UBERON:0000203!1.51e-08!21;UBERON:0002619!1.45e-07!17;UBERON:0002021!8.34e-07!10;UBERON:0000411!8.34e-07!10;UBERON:0001950!8.34e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.32e-32,73;UBERON:0001016,1.94e-31,75;UBERON:0004121,4.27e-29,95;UBERON:0000924,4.27e-29,95;UBERON:0006601,4.27e-29,95;UBERON:0002346,3.97e-28,64;UBERON:0003075,3.97e-28,64;UBERON:0007284,3.97e-28,64;UBERON:0000073,1.71e-25,54;UBERON:0010371,1.47e-24,73;UBERON:0001049,1.12e-23,52;UBERON:0005068,1.12e-23,52;UBERON:0006241,1.12e-23,52;UBERON:0007135,1.12e-23,52;UBERON:0000955,1.65e-20,47;UBERON:0006238,1.65e-20,47;UBERON:0003056,3.16e-20,49;UBERON:0002616,8.40e-20,46;UBERON:0010314,2.69e-18,92;UBERON:0003080,1.08e-17,40;UBERON:0002020,5.26e-17,34;UBERON:0002780,6.17e-17,39;UBERON:0001890,6.17e-17,39;UBERON:0006240,6.17e-17,39;UBERON:0003528,6.47e-14,29;UBERON:0002791,6.47e-14,29;UBERON:0001893,6.47e-14,29;UBERON:0000956,7.20e-09,21;UBERON:0001869,7.20e-09,21;UBERON:0000203,7.20e-09,21;UBERON:0002619,8.43e-08,17;UBERON:0002021,3.10e-07,10;UBERON:0000411,3.10e-07,10;UBERON:0001950,3.10e-07,10 | |||
|phase1_expression=7.20669811971573,0,0,0,0,0.16787927191189,0,2.45334314538995,1.97104211012333,1.40438715793196,0.68487187290202,0.398860794976682,1.36960583944965,0.874204024189974,5.66286595086627,2.02475267389826,0.699561878128147,0.473193248037357,1.09691546884591,0.84877930359606,12.9265801029626,0,0,0,0.45881856213434,0,0,0.215471232685889,0.190023419456374,0,0,0.635030673459631,0,0,0,0.166234645358492,0,0,0,0,0,0.683045484958446,0,0,0,0,1.56478268869608,1.52617609466313,1.09843091367236,0.58328969722285,0.139986421625363,0,0.167782606057736,0.725362142011344,2.01656279485478,0,0,0,43.4980390848135,59.2469896784677,38.0298842103708,1.35537812827653,0,5.84934816232909,3.9554654502679,5.6838409195688,2.09720077362883,4.99483796918021,5.49554945234932,6.61529097825284,5.8890989178387,49.7032712862618,43.2902340265163,16.6587486932338,11.0222291670972,18.3843757322004,214.725967948808,104.958991906024,108.446212478908,60.0082609172382,51.6905186353615,48.4449434617787,71.7500307433549,91.7303054351638,71.8151764551008,57.4525741673652,46.4131679405076,60.2070210015721,0.908714319998209,3.55186332501892,0.289864488701678,0,0,0.539703191637817,0,0,3.7919993435573,0,0,0,6.61964072950398,0,0,0,0.432982082022428,1.01343946190039,0,3.08296475241462,0.258937883647172,9.94562331734326,7.45986905094384,7.61163695780353,6.22661842591358,9.19408107370998,6.34979018532806,4.39833069653864,0.247194967734374,0.578397427679647,6.19227386364912,0.647067399789637,0.662524555381181,0.484875253135222,0,56.7994746202401,90.0620839297857,0.255457055208591,0.479260498023681,0,0,124.326230706003,53.0700699269607,52.2722104789516,68.4867821557569,42.7044813741652,127.58185935957,66.1944353316451,0.509196819251581,0.746441823660558,0,3.36706969418358,2.21204753036596,7.58676944630461,7.74267158163002,8.43946979880004,11.9063873514824,6.79002717509704,9.27647073141315,7.76110112217047,0.862271971731369,0.189106080167819,1.05570674498369,0.43839146485515,0.278047249225598,0,0,1.19420560091096,0,0,0,2.48550927042602,2.34526059981096,0.540186184383045,0.946978942340841,0.196764231747404,0,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0.0810688095458557,0.146199987425332,0,0.268412837520744,16.4026159880019,21.4041593748912,0.330418782983798,0.528901133327089,1.91959425481711,3.48355007790658,2.19074684247559,1.61346819698674,1.33426826306922,1.90225626112559,1.42358718463353,2.47048432086016,1.25667604400135,2.38747766449381,1.16978452271472,0,0.216138049874694,0.597423819763102,0.569003702859245,2.17072173958485,0,1.4255592949172,0.581857461502877,0.631222379012867,0.252946148497029,0,0.156998727841375,0.370191491765402,0.592905254174298,0.500535317148282,0.786235980452812,0.449724224769707,0.405720242777006,0.482354319504834,0.25462585178142,0.575392274901621,1.62135226775035,2.19649130550465,1.43768206527355,3.34926852901653,1.87222603868736,1.51547326768267,0.717589654087649,0.964887042726734,1.10851914099963,2.27389694124582,0.814824882210129,0.509235257325564,0.234690248288502,0.335012514883631,0.238043640886014,0.195133647857799,0.630540576424764,0.8858587585951,0.637819074629948,0.491589944147214,0.690739927463582,1.59113964439663,0,2.17562273527484,5.90117127622843,3.58717770196152,53.4633464659347,44.7748642782216,0,0,16.0909191902291,15.2271110275689,27.3587715120655,13.3822526853429,12.0311284004493,10.7569081699756,28.7415598189175,25.1340037803728,26.0889933444706,63.6216206515178,0.851640511249612,1.95872164033981,1.79175655288934,1.64970122972535,3.98235415019888,0.485561272309963,1.209294227859,1.50884063804718,1.47650946440386,2.45948118355142,2.58428293168221,3.27180356529755,1.06949213515416,1.58018378967908,1.05418608574999,1.03135543248187,12.9367050186439,3.24109969256358,3.10460841078611,1.92903331528433,4.61084607469911,14.9829806785739,15.9612549984057,19.4857567433344,0.469343416127421,0,0.661585194164886,0.32977250588296,0,0.241251699712623,0.119372344003136,0.328281799490123,1.1659233465194,41.9061182543752,6.66396435111626,0.412773735926445,0.370389054739423,2.0720530270516,0.546776910884101,3.66045077130436,1.01987057996313,0.559805809294632,1.38199973804424,0,1.42351197111511,1.42323626988794,1.62008011232702,2.50905955217362,1.52853794622324,1.61837215661785,1.48776220305605,0.785267825952089,1.29614973291793,1.24267862617385,1.12738587736838,2.54178128274764,2.48187735685646,6.41688921535357,5.42471258606471,3.37912250981556,1.5256441023948,3.1249052362548,6.29156066554265,2.65742532908607,0.864090018773596,2.52808896502543,0.608175645870493,0.308132871494482,0.25984164595559,0.716106782669926,0.79472541912506,0.600977247599844,0.295379054349154,0.706765149637033,1.5241361331,0.403304740547362,0.877120926657772,1.05833025804362,1.8700304349051,0.453460767230423,1.33191572024439,1.07656627931371,0.671538465456314,0.772758376128762,0.375364950902364,0.73260649706906,0,0.501572104035363,17.5073071211291,23.0162618253588,20.6242384838183,27.3246559926463,63.0275918188991,50.6113911251099,51.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| |||
|short_description=p1@Rims3 | |||
}} |
Revision as of 16:36, 4 August 2015
Short description: | p1@Rims3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rims3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000071093, ENSMUST00000132895, ENSMUST00000165731, uc008unq.1, uc008unr.1_5end |
EntrezGene: | 242662 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.72e-18 | 33 |
neuronal stem cell | 2.72e-18 | 33 |
neuroblast | 2.72e-18 | 33 |
electrically signaling cell | 2.72e-18 | 33 |
ectodermal cell | 9.25e-14 | 44 |
neurectodermal cell | 9.25e-14 | 44 |
CNS neuron (sensu Vertebrata) | 1.02e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.02e-13 | 23 |
neural cell | 1.68e-13 | 43 |
electrically responsive cell | 1.47e-12 | 39 |
electrically active cell | 1.47e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.32e-32 | 73 |
nervous system | 1.94e-31 | 75 |
ectoderm-derived structure | 4.27e-29 | 95 |
ectoderm | 4.27e-29 | 95 |
presumptive ectoderm | 4.27e-29 | 95 |
neurectoderm | 3.97e-28 | 64 |
neural plate | 3.97e-28 | 64 |
presumptive neural plate | 3.97e-28 | 64 |
regional part of nervous system | 1.71e-25 | 54 |
ecto-epithelium | 1.47e-24 | 73 |
neural tube | 1.12e-23 | 52 |
neural rod | 1.12e-23 | 52 |
future spinal cord | 1.12e-23 | 52 |
neural keel | 1.12e-23 | 52 |
brain | 1.65e-20 | 47 |
future brain | 1.65e-20 | 47 |
pre-chordal neural plate | 3.16e-20 | 49 |
regional part of brain | 8.40e-20 | 46 |
structure with developmental contribution from neural crest | 2.69e-18 | 92 |
anterior neural tube | 1.08e-17 | 40 |
gray matter | 5.26e-17 | 34 |
regional part of forebrain | 6.17e-17 | 39 |
forebrain | 6.17e-17 | 39 |
future forebrain | 6.17e-17 | 39 |
brain grey matter | 6.47e-14 | 29 |
regional part of telencephalon | 6.47e-14 | 29 |
telencephalon | 6.47e-14 | 29 |
cerebral cortex | 7.20e-09 | 21 |
cerebral hemisphere | 7.20e-09 | 21 |
pallium | 7.20e-09 | 21 |
regional part of cerebral cortex | 8.43e-08 | 17 |
occipital lobe | 3.10e-07 | 10 |
visual cortex | 3.10e-07 | 10 |
neocortex | 3.10e-07 | 10 |