FFCP PHASE1:Mm9::chr12:28026469..28026480,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=100|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:28026469..28026480,-|id=chr12:28026469..28026480,-|ontology_enrichment_celltype=CL:0000117!1.61e-14!23;CL:0000337!1.61e-14!23;CL:0002609!1.24e-12!6;CL:0000540!7.55e-12!33;CL:0000047!7.55e-12!33;CL:0000031!7.55e-12!33;CL:0000404!7.55e-12!33;CL:0000393!2.33e-09!39;CL:0000211!2.33e-09!39;CL:0002319!4.25e-08!43;CL:0000221!8.05e-08!44;CL:0000133!8.05e-08!44;CL:0002608!5.08e-07!3|ontology_enrichment_celltype_v019_2=CL:0002609,5.11e-46,6;CL:0000117,2.59e-30,23;CL:0000337,2.59e-30,23;CL:0000540,3.59e-21,33;CL:0000047,3.59e-21,33;CL:0000031,3.59e-21,33;CL:0000404,3.59e-21,33;CL:0000393,6.32e-18,39;CL:0000211,6.32e-18,39;CL:0002319,2.91e-16,43;CL:0000221,6.80e-16,44;CL:0000133,6.80e-16,44;CL:0002608,1.23e-15,3;CL:0000120,2.04e-15,3;CL:0002321,5.63e-10,70;CL:0000723,1.22e-07,91;CL:0000048,1.22e-07,91;CL:0000034,3.71e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.75e-09!34;UBERON:0003056!6.54e-09!49;UBERON:0001017!7.60e-09!73;UBERON:0005743!7.60e-09!73;UBERON:0002346!1.04e-08!71;UBERON:0003075!1.04e-08!71;UBERON:0007284!1.04e-08!71;UBERON:0002791!1.41e-08!29;UBERON:0003528!1.41e-08!29;UBERON:0001893!1.41e-08!29;UBERON:0002780!1.46e-08!39;UBERON:0001890!1.46e-08!39;UBERON:0006240!1.46e-08!39;UBERON:0000073!1.90e-08!75;UBERON:0001016!1.90e-08!75;UBERON:0001049!2.63e-08!52;UBERON:0005068!2.63e-08!52;UBERON:0006241!2.63e-08!52;UBERON:0007135!2.63e-08!52;UBERON:0003080!3.00e-08!40;UBERON:0004121!3.63e-07!102;UBERON:0000924!3.63e-07!102;UBERON:0006601!3.63e-07!102;UBERON:0002616!4.71e-07!49;UBERON:0000955!7.88e-07!50;UBERON:0006238!7.88e-07!50;UBERON:0000033!8.05e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.05e-13,21;UBERON:0001869,2.05e-13,21;UBERON:0000203,2.05e-13,21;UBERON:0003528,8.94e-10,29;UBERON:0002791,8.94e-10,29;UBERON:0001893,8.94e-10,29;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0002020,2.31e-08,34;UBERON:0000073,2.17e-07,54;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95;UBERON:0002780,2.62e-07,39;UBERON:0001890,2.62e-07,39;UBERON:0006240,2.62e-07,39;UBERON:0001954,3.05e-07,7;UBERON:0003022,3.05e-07,7;UBERON:0002421,3.05e-07,7;UBERON:0000349,3.05e-07,7;UBERON:0002600,3.05e-07,7;UBERON:0003080,3.97e-07,40|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,2.07379224616955,4.05017814995072,1.47227472945967,0,0,0.61245399607477,1.34183659425531,2.75765635983006,1.10115880999389,0,0,0.263772575460388,0.731901148819277,0.52091337055676,0,0,0,0,0.284743361598206,0.559198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125654352112864,0,0,0.20778804455956,0,0,0,0,0,0.260240885925407,0.229902104433473,0,0,0.0680364991513279,0,0,0,0.431135985865684,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.205809224758569,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0.215423397732799,0.238968797952552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685082519770642,0,0,0,0.453142408984205,0,0.415149390336707,0,0,0,0,0,0.44449345560323,0.206035057238894,0.320919209591815,0.505394423527595,0,0.188626341386076,0,0.256100609619477,0,0,0,0.192909220463705,0,0.294397840268795,0,0,0.238436189947321,0,0,0,0,0.263069711437843,0,0,0.237270036248348,0.0985044823755635,0,0,0,0.249810577937946,0.233931608445408,0,0,0,0|short_description=p@chr12:28026469..28026480,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=100 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:28026469..28026480,- | |||
|description=CAGE_peak_at_chr12:28026469..28026480,- | |||
|id=chr12:28026469..28026480,- | |||
|ontology_enrichment_celltype=CL:0000117!1.61e-14!23;CL:0000337!1.61e-14!23;CL:0002609!1.24e-12!6;CL:0000540!7.55e-12!33;CL:0000047!7.55e-12!33;CL:0000031!7.55e-12!33;CL:0000404!7.55e-12!33;CL:0000393!2.33e-09!39;CL:0000211!2.33e-09!39;CL:0002319!4.25e-08!43;CL:0000221!8.05e-08!44;CL:0000133!8.05e-08!44;CL:0002608!5.08e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,5.11e-46,6;CL:0000117,2.59e-30,23;CL:0000337,2.59e-30,23;CL:0000540,3.59e-21,33;CL:0000047,3.59e-21,33;CL:0000031,3.59e-21,33;CL:0000404,3.59e-21,33;CL:0000393,6.32e-18,39;CL:0000211,6.32e-18,39;CL:0002319,2.91e-16,43;CL:0000221,6.80e-16,44;CL:0000133,6.80e-16,44;CL:0002608,1.23e-15,3;CL:0000120,2.04e-15,3;CL:0002321,5.63e-10,70;CL:0000723,1.22e-07,91;CL:0000048,1.22e-07,91;CL:0000034,3.71e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.75e-09!34;UBERON:0003056!6.54e-09!49;UBERON:0001017!7.60e-09!73;UBERON:0005743!7.60e-09!73;UBERON:0002346!1.04e-08!71;UBERON:0003075!1.04e-08!71;UBERON:0007284!1.04e-08!71;UBERON:0002791!1.41e-08!29;UBERON:0003528!1.41e-08!29;UBERON:0001893!1.41e-08!29;UBERON:0002780!1.46e-08!39;UBERON:0001890!1.46e-08!39;UBERON:0006240!1.46e-08!39;UBERON:0000073!1.90e-08!75;UBERON:0001016!1.90e-08!75;UBERON:0001049!2.63e-08!52;UBERON:0005068!2.63e-08!52;UBERON:0006241!2.63e-08!52;UBERON:0007135!2.63e-08!52;UBERON:0003080!3.00e-08!40;UBERON:0004121!3.63e-07!102;UBERON:0000924!3.63e-07!102;UBERON:0006601!3.63e-07!102;UBERON:0002616!4.71e-07!49;UBERON:0000955!7.88e-07!50;UBERON:0006238!7.88e-07!50;UBERON:0000033!8.05e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.05e-13,21;UBERON:0001869,2.05e-13,21;UBERON:0000203,2.05e-13,21;UBERON:0003528,8.94e-10,29;UBERON:0002791,8.94e-10,29;UBERON:0001893,8.94e-10,29;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0002020,2.31e-08,34;UBERON:0000073,2.17e-07,54;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95;UBERON:0002780,2.62e-07,39;UBERON:0001890,2.62e-07,39;UBERON:0006240,2.62e-07,39;UBERON:0001954,3.05e-07,7;UBERON:0003022,3.05e-07,7;UBERON:0002421,3.05e-07,7;UBERON:0000349,3.05e-07,7;UBERON:0002600,3.05e-07,7;UBERON:0003080,3.97e-07,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,2.07379224616955,4.05017814995072,1.47227472945967,0,0,0.61245399607477,1.34183659425531,2.75765635983006,1.10115880999389,0,0,0.263772575460388,0.731901148819277,0.52091337055676,0,0,0,0,0.284743361598206,0.559198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125654352112864,0,0,0.20778804455956,0,0,0,0,0,0.260240885925407,0.229902104433473,0,0,0.0680364991513279,0,0,0,0.431135985865684,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.205809224758569,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0.215423397732799,0.238968797952552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685082519770642,0,0,0,0.453142408984205,0,0.415149390336707,0,0,0,0,0,0.44449345560323,0.206035057238894,0.320919209591815,0.505394423527595,0,0.188626341386076,0,0.256100609619477,0,0,0,0.192909220463705,0,0.294397840268795,0,0,0.238436189947321,0,0,0,0,0.263069711437843,0,0,0.237270036248348,0.0985044823755635,0,0,0,0.249810577937946,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr12:28026469..28026480,- | |||
}} |
Latest revision as of 22:54, 4 August 2015
Short description: | p@chr12:28026469..28026480, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:28026469..28026480, - |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 5.11e-46 | 6 |
CNS neuron (sensu Vertebrata) | 2.59e-30 | 23 |
neuroblast (sensu Vertebrata) | 2.59e-30 | 23 |
neuron | 3.59e-21 | 33 |
neuronal stem cell | 3.59e-21 | 33 |
neuroblast | 3.59e-21 | 33 |
electrically signaling cell | 3.59e-21 | 33 |
electrically responsive cell | 6.32e-18 | 39 |
electrically active cell | 6.32e-18 | 39 |
neural cell | 2.91e-16 | 43 |
ectodermal cell | 6.80e-16 | 44 |
neurectodermal cell | 6.80e-16 | 44 |
hippocampal neuron | 1.23e-15 | 3 |
granule cell | 2.04e-15 | 3 |
embryonic cell | 5.63e-10 | 70 |
somatic stem cell | 1.22e-07 | 91 |
multi fate stem cell | 1.22e-07 | 91 |
stem cell | 3.71e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.05e-13 | 21 |
cerebral hemisphere | 2.05e-13 | 21 |
pallium | 2.05e-13 | 21 |
brain grey matter | 8.94e-10 | 29 |
regional part of telencephalon | 8.94e-10 | 29 |
telencephalon | 8.94e-10 | 29 |
central nervous system | 1.46e-09 | 73 |
nervous system | 2.65e-09 | 75 |
gray matter | 2.31e-08 | 34 |
regional part of nervous system | 2.17e-07 | 54 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |
regional part of forebrain | 2.62e-07 | 39 |
forebrain | 2.62e-07 | 39 |
future forebrain | 2.62e-07 | 39 |
Ammon's horn | 3.05e-07 | 7 |
lobe parts of cerebral cortex | 3.05e-07 | 7 |
hippocampal formation | 3.05e-07 | 7 |
limbic system | 3.05e-07 | 7 |
limbic lobe | 3.05e-07 | 7 |
anterior neural tube | 3.97e-07 | 40 |