FFCP PHASE1:Mm9::chr2:32576629..32576660,+: Difference between revisions
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{{FFCP|EntrezGene=27387|HGNC=|MCL_coexpression_id=36|UniProt=A2AK83,Q9QZS8|association_with_transcript=37bp_to_uc008jgp.1,uc008jgq.1_5end|description=CAGE_peak_2_at_Sh2d3c_5end|id=chr2:32576629..32576660,+|ontology_enrichment_celltype=CL:0000988!2.73e-09!32;CL:0002032!2.73e-09!32;CL:0000037!2.73e-09!32;CL:0000566!2.73e-09!32;CL:0000837!2.73e-09!32;CL:0000738!3.52e-08!17;CL:0002087!3.52e-08!17;CL:0002031!1.30e-07!25;CL:0000542!1.81e-07!13;CL:0000051!1.81e-07!13;CL:0000838!3.49e-07!12|ontology_enrichment_celltype_v019_2=CL:0000988,1.97e-10,32;CL:0002032,1.97e-10,32;CL:0000037,1.97e-10,32;CL:0000837,1.97e-10,32;CL:0002031,1.19e-08,25;CL:0000738,1.38e-08,17;CL:0002087,1.38e-08,17;CL:0000542,7.83e-08,13;CL:0000051,7.83e-08,13;CL:0000838,1.57e-07,12;CL:0000084,6.74e-07,11;CL:0000827,6.74e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!3.56e-18!48;UBERON:0002390!1.08e-16!45;UBERON:0003061!1.08e-16!45;UBERON:0002405!3.76e-13!70;UBERON:0004177!5.62e-11!29;UBERON:0000926!4.63e-10!193;UBERON:0004120!4.63e-10!193;UBERON:0006603!4.63e-10!193;UBERON:0000065!1.19e-08!41;UBERON:0001004!1.39e-08!42;UBERON:0001041!6.04e-08!92;UBERON:0002370!8.98e-08!23;UBERON:0000974!8.98e-08!23;UBERON:0004807!8.98e-08!23;UBERON:0005058!8.98e-08!23;UBERON:0003351!8.98e-08!23;UBERON:0009113!8.98e-08!23;UBERON:0003295!8.98e-08!23;UBERON:0009722!8.98e-08!23;UBERON:0005562!8.98e-08!23;UBERON:0007690!8.98e-08!23;UBERON:0003408!1.25e-07!24;UBERON:0003081!2.51e-07!88;UBERON:0000077!4.58e-07!97;UBERON:0001048!4.99e-07!147;UBERON:0006562!5.06e-07!24;UBERON:0001557!5.06e-07!24;UBERON:0001042!5.06e-07!24;UBERON:0008814!5.06e-07!24;UBERON:0009145!5.06e-07!24;UBERON:0005057!8.50e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.90e-20,48;UBERON:0002405,9.90e-20,48;UBERON:0002390,3.80e-18,45;UBERON:0003061,3.80e-18,45;UBERON:0004177,4.60e-12,29;UBERON:0005057,4.60e-12,29;UBERON:0000065,4.57e-10,41;UBERON:0001004,5.58e-10,42;UBERON:0000077,1.15e-08,35;UBERON:0002370,1.27e-08,23;UBERON:0000974,1.27e-08,23;UBERON:0004807,1.27e-08,23;UBERON:0005058,1.27e-08,23;UBERON:0003351,1.27e-08,23;UBERON:0009113,1.27e-08,23;UBERON:0003295,1.27e-08,23;UBERON:0009722,1.27e-08,23;UBERON:0005562,1.27e-08,23;UBERON:0007690,1.27e-08,23;UBERON:0001041,1.31e-08,80;UBERON:0003408,1.87e-08,24;UBERON:0000926,7.85e-08,120;UBERON:0004120,7.85e-08,120;UBERON:0006603,7.85e-08,120;UBERON:0003081,8.35e-08,87;UBERON:0006562,8.35e-08,24;UBERON:0001557,8.35e-08,24;UBERON:0001042,8.35e-08,24;UBERON:0008814,8.35e-08,24;UBERON:0009145,8.35e-08,24;UBERON:0002371,6.48e-07,16;UBERON:0001474,6.81e-07,22;UBERON:0004765,6.81e-07,22;UBERON:0001434,6.81e-07,22|phase1_expression=0.160148847104794,0,0,0,0,0,0,50.2289728187732,4.36445038670167,10.0647746318457,2.73948749160808,4.3874687447435,37.3217591250028,38.3775566619399,8.66085380720723,12.5534665781692,3.49780939064073,56.7831897644828,57.8622909816218,55.1706547337439,0.595303031057488,40.6099990411621,26.9035782813103,6.87967418011649,6.42345986988076,0,0,0,0.950117097281869,1.51218077855958,0.886922042621219,0,0,0,0,0,0,79.1024782092756,30.4720784364282,47.6406607016156,134.705010759102,99.0415953189746,65.5438976592057,0,0,0,0.782391344348039,1.30815093828268,0.439372365468944,0,0.279972843250725,2.87505128729943,24.160695272314,15.9579671242496,16.1325023588383,0,0.286533439938757,0,0.202316460859598,0,0.633831403506179,0,0,4.94944844504769,2.96659908770092,3.5524005747305,2.99600110518405,3.07374644257244,0.103689612308478,0.270011876663381,0.630974884054146,0.856952953211411,0.662605622854841,0.122490799214954,0.383381884072945,0,0,0.255374676170375,0,0.131886287730194,0.0914876436024097,0,0.279182999001381,0.56276261003168,0.15279824777681,0.883885756421003,0.284743361598206,0.186399445825301,0.075726193333184,0.453429360640713,0,1.72084775396277,0,0,0.649776417447669,0,2.38755514223978,0,0,0,0.422530259330042,0,2.54805239706646,0,0,0,0,2.39786147410026,44.2783781036664,1.33597925158342,2.60227990149204,1.52232739156071,0.461230994512117,0.150722640552623,1.41106448562846,0.502666365318702,0,1.73519228303894,15.9229899350977,3.07357014900077,9.05450225687614,11.6370060752453,0,0.292780797011547,0,2.55457055208591,7.30872259486114,1.19980546198682,6.4805815807263,0,0.915001205637253,0.125654352112864,0.347648640384553,0.511430914660661,0.20778804455956,0,4.17541391786297,8.33526703087623,0.252722758433675,0.841767423545896,1.95180664444056,1.37941262660084,2.34080768746954,1.05493372485001,2.38127747029647,2.8185018462667,3.5606655332697,0.258703370739016,1.07783996466421,1.70195472151037,1.05570674498369,2.6303487891309,3.33656699070717,1.39300866608867,0.61734640922383,6.76716507182877,6.31991868581911,3.86021860672073,6.81992398549422,1.86413195281952,1.40715635988658,1.80062061461015,1.89395788468168,2.55793501271625,0.617068451549513,1.16266972375204,0.804820204198858,1.28441876603886,0,1.47750717671186,0.405344047729279,0.584799949701329,1.53685080703735,0.9394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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:27387 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2AK83,uniprot:Q9QZS8 | |||
|association_with_transcript=37bp_to_uc008jgp.1,uc008jgq.1_5end | |||
|cluster_id=chr2:32576629..32576660,+ | |||
|description=CAGE_peak_2_at_Sh2d3c_5end | |||
|id=chr2:32576629..32576660,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.73e-09!32;CL:0002032!2.73e-09!32;CL:0000037!2.73e-09!32;CL:0000566!2.73e-09!32;CL:0000837!2.73e-09!32;CL:0000738!3.52e-08!17;CL:0002087!3.52e-08!17;CL:0002031!1.30e-07!25;CL:0000542!1.81e-07!13;CL:0000051!1.81e-07!13;CL:0000838!3.49e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.97e-10,32;CL:0002032,1.97e-10,32;CL:0000037,1.97e-10,32;CL:0000837,1.97e-10,32;CL:0002031,1.19e-08,25;CL:0000738,1.38e-08,17;CL:0002087,1.38e-08,17;CL:0000542,7.83e-08,13;CL:0000051,7.83e-08,13;CL:0000838,1.57e-07,12;CL:0000084,6.74e-07,11;CL:0000827,6.74e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.56e-18!48;UBERON:0002390!1.08e-16!45;UBERON:0003061!1.08e-16!45;UBERON:0002405!3.76e-13!70;UBERON:0004177!5.62e-11!29;UBERON:0000926!4.63e-10!193;UBERON:0004120!4.63e-10!193;UBERON:0006603!4.63e-10!193;UBERON:0000065!1.19e-08!41;UBERON:0001004!1.39e-08!42;UBERON:0001041!6.04e-08!92;UBERON:0002370!8.98e-08!23;UBERON:0000974!8.98e-08!23;UBERON:0004807!8.98e-08!23;UBERON:0005058!8.98e-08!23;UBERON:0003351!8.98e-08!23;UBERON:0009113!8.98e-08!23;UBERON:0003295!8.98e-08!23;UBERON:0009722!8.98e-08!23;UBERON:0005562!8.98e-08!23;UBERON:0007690!8.98e-08!23;UBERON:0003408!1.25e-07!24;UBERON:0003081!2.51e-07!88;UBERON:0000077!4.58e-07!97;UBERON:0001048!4.99e-07!147;UBERON:0006562!5.06e-07!24;UBERON:0001557!5.06e-07!24;UBERON:0001042!5.06e-07!24;UBERON:0008814!5.06e-07!24;UBERON:0009145!5.06e-07!24;UBERON:0005057!8.50e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.90e-20,48;UBERON:0002405,9.90e-20,48;UBERON:0002390,3.80e-18,45;UBERON:0003061,3.80e-18,45;UBERON:0004177,4.60e-12,29;UBERON:0005057,4.60e-12,29;UBERON:0000065,4.57e-10,41;UBERON:0001004,5.58e-10,42;UBERON:0000077,1.15e-08,35;UBERON:0002370,1.27e-08,23;UBERON:0000974,1.27e-08,23;UBERON:0004807,1.27e-08,23;UBERON:0005058,1.27e-08,23;UBERON:0003351,1.27e-08,23;UBERON:0009113,1.27e-08,23;UBERON:0003295,1.27e-08,23;UBERON:0009722,1.27e-08,23;UBERON:0005562,1.27e-08,23;UBERON:0007690,1.27e-08,23;UBERON:0001041,1.31e-08,80;UBERON:0003408,1.87e-08,24;UBERON:0000926,7.85e-08,120;UBERON:0004120,7.85e-08,120;UBERON:0006603,7.85e-08,120;UBERON:0003081,8.35e-08,87;UBERON:0006562,8.35e-08,24;UBERON:0001557,8.35e-08,24;UBERON:0001042,8.35e-08,24;UBERON:0008814,8.35e-08,24;UBERON:0009145,8.35e-08,24;UBERON:0002371,6.48e-07,16;UBERON:0001474,6.81e-07,22;UBERON:0004765,6.81e-07,22;UBERON:0001434,6.81e-07,22 | |||
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| |||
|short_description=p2@Sh2d3c | |||
}} |
Revision as of 01:46, 5 August 2015
Short description: | p2@Sh2d3c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sh2d3c_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 37bp_to_uc008jgp.1, uc008jgq.1_5end |
EntrezGene: | 27387 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.97e-10 | 32 |
hematopoietic oligopotent progenitor cell | 1.97e-10 | 32 |
hematopoietic stem cell | 1.97e-10 | 32 |
hematopoietic multipotent progenitor cell | 1.97e-10 | 32 |
hematopoietic lineage restricted progenitor cell | 1.19e-08 | 25 |
leukocyte | 1.38e-08 | 17 |
nongranular leukocyte | 1.38e-08 | 17 |
lymphocyte | 7.83e-08 | 13 |
common lymphoid progenitor | 7.83e-08 | 13 |
lymphoid lineage restricted progenitor cell | 1.57e-07 | 12 |
T cell | 6.74e-07 | 11 |
pro-T cell | 6.74e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 9.90e-20 | 48 |
immune system | 9.90e-20 | 48 |
hematopoietic system | 3.80e-18 | 45 |
blood island | 3.80e-18 | 45 |
hemopoietic organ | 4.60e-12 | 29 |
immune organ | 4.60e-12 | 29 |
respiratory tract | 4.57e-10 | 41 |
respiratory system | 5.58e-10 | 42 |
mixed endoderm/mesoderm-derived structure | 1.15e-08 | 35 |
thymus | 1.27e-08 | 23 |
neck | 1.27e-08 | 23 |
respiratory system epithelium | 1.27e-08 | 23 |
hemolymphoid system gland | 1.27e-08 | 23 |
pharyngeal epithelium | 1.27e-08 | 23 |
thymic region | 1.27e-08 | 23 |
pharyngeal gland | 1.27e-08 | 23 |
entire pharyngeal arch endoderm | 1.27e-08 | 23 |
thymus primordium | 1.27e-08 | 23 |
early pharyngeal endoderm | 1.27e-08 | 23 |
foregut | 1.31e-08 | 80 |
gland of gut | 1.87e-08 | 24 |
mesoderm | 7.85e-08 | 120 |
mesoderm-derived structure | 7.85e-08 | 120 |
presumptive mesoderm | 7.85e-08 | 120 |
lateral plate mesoderm | 8.35e-08 | 87 |
pharynx | 8.35e-08 | 24 |
upper respiratory tract | 8.35e-08 | 24 |
chordate pharynx | 8.35e-08 | 24 |
pharyngeal arch system | 8.35e-08 | 24 |
pharyngeal region of foregut | 8.35e-08 | 24 |
bone marrow | 6.48e-07 | 16 |
bone element | 6.81e-07 | 22 |
skeletal element | 6.81e-07 | 22 |
skeletal system | 6.81e-07 | 22 |