FFCP PHASE1:Mm9::chr15:12754596..12754638,+: Difference between revisions
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{{FFCP|EntrezGene=14000|HGNC=|MCL_coexpression_id=399|UniProt=Q5HZJ0|association_with_transcript=0bp_to_ENSMUST00000090292_5end|description=CAGE_peak_1_at_Drosha_5end|id=chr15:12754596..12754638,+|ontology_enrichment_celltype=CL:0000117!4.47e-09!23;CL:0000337!4.47e-09!23;CL:0000540!2.49e-07!33;CL:0000047!2.49e-07!33;CL:0000031!2.49e-07!33;CL:0000404!2.49e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.47e-09,23;CL:0000337,4.47e-09,23;CL:0000540,2.49e-07,33;CL:0000047,2.49e-07,33;CL:0000031,2.49e-07,33;CL:0000404,2.49e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.95e-20!63;UBERON:0000955!9.20e-20!50;UBERON:0006238!9.20e-20!50;UBERON:0002616!3.95e-19!49;UBERON:0003056!5.69e-19!49;UBERON:0001049!7.31e-19!52;UBERON:0005068!7.31e-19!52;UBERON:0006241!7.31e-19!52;UBERON:0007135!7.31e-19!52;UBERON:0001017!8.03e-18!73;UBERON:0005743!8.03e-18!73;UBERON:0002346!3.22e-17!71;UBERON:0003075!3.22e-17!71;UBERON:0007284!3.22e-17!71;UBERON:0000073!4.90e-17!75;UBERON:0001016!4.90e-17!75;UBERON:0003080!5.84e-17!40;UBERON:0002780!2.98e-16!39;UBERON:0001890!2.98e-16!39;UBERON:0006240!2.98e-16!39;UBERON:0004121!9.09e-16!102;UBERON:0000924!9.09e-16!102;UBERON:0006601!9.09e-16!102;UBERON:0002791!8.05e-14!29;UBERON:0003528!8.05e-14!29;UBERON:0001893!8.05e-14!29;UBERON:0002020!8.68e-14!34;UBERON:0000153!3.03e-13!94;UBERON:0007811!1.50e-10!86;UBERON:0000468!1.97e-10!333;UBERON:0000956!7.29e-10!21;UBERON:0001869!7.29e-10!21;UBERON:0000203!7.29e-10!21;UBERON:0000922!2.18e-08!328;UBERON:0000025!6.78e-08!114;UBERON:0002619!1.04e-07!17;UBERON:0004111!5.24e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.45e-20,64;UBERON:0003075,2.45e-20,64;UBERON:0007284,2.45e-20,64;UBERON:0000073,2.39e-19,54;UBERON:0003056,5.69e-19,49;UBERON:0001049,7.31e-19,52;UBERON:0005068,7.31e-19,52;UBERON:0006241,7.31e-19,52;UBERON:0007135,7.31e-19,52;UBERON:0000955,1.22e-18,47;UBERON:0006238,1.22e-18,47;UBERON:0002616,5.14e-18,46;UBERON:0004121,6.77e-18,95;UBERON:0000924,6.77e-18,95;UBERON:0006601,6.77e-18,95;UBERON:0001017,8.03e-18,73;UBERON:0010371,1.06e-17,73;UBERON:0001016,4.90e-17,75;UBERON:0003080,5.84e-17,40;UBERON:0002780,2.98e-16,39;UBERON:0001890,2.98e-16,39;UBERON:0006240,2.98e-16,39;UBERON:0010314,1.21e-14,92;UBERON:0003528,8.05e-14,29;UBERON:0002791,8.05e-14,29;UBERON:0001893,8.05e-14,29;UBERON:0002020,8.68e-14,34;UBERON:0000956,7.29e-10,21;UBERON:0001869,7.29e-10,21;UBERON:0000203,7.29e-10,21;UBERON:0000922,4.85e-09,320;UBERON:0000025,6.78e-08,114;UBERON:0002619,1.04e-07,17;UBERON:0004111,5.24e-07,122|phase1_expression=19.3780104996801,8.72438519098403,6.3699893514535,9.98131897312539,11.520601788766,9.23335995515394,12.1478573109673,8.52213934714403,4.36445038670167,3.04283884218592,9.07455231595176,7.09972215058494,14.3808613142213,8.13009742496676,27.6481102307,18.2227740650843,16.7894850750755,8.04428521663506,8.63820931716154,6.79023442876848,26.6185498172848,13.6028603145213,15.4107875591972,13.9193407830264,8.71755268055246,2.29692785646008,6.03066794622705,10.1271479362368,17.8622014288991,7.81293402255785,7.31710685162506,31.1165029995219,31.9833689543976,31.6963362030877,15.8868390863201,12.1351291111699,15.1085323634153,2.09265815368454,4.6880120671428,1.0470474879476,1.76469446409304,0.683045484958446,2.42755176515577,26.6901254108224,24.5332173551225,33.7726023977494,28.1660883965294,23.3286917327078,21.7489320907127,26.2480363750283,24.6376102060638,25.8754615856949,7.21465206048266,13.7818806982155,14.452033363126,14.406528418013,18.0516067161417,14.4388185837684,59.0764065710026,52.8990979272033,41.8328726314078,16.9422266034566,23.1216646988896,7.64914759689189,18.7884608887725,10.6572017241915,12.8828047522914,24.2057532352579,60.139975138917,57.2425178526368,58.4703392556842,29.136400409188,27.8294361599033,54.1409332530097,69.5838119592396,52.3954708367712,36.3382407297983,53.3733073196085,56.9880238380663,68.1852107565102,73.8305283871446,60.9468643551409,47.7402928292361,44.4582461925027,40.7971321564083,36.2393160132611,50.2572033220833,50.7006492644818,21.5062389066243,28.8683359607921,28.1168554040627,8.60423876981386,3.39985666853875,9.71465744948071,13.6453047664011,11.6486990645307,18.8195522976547,26.7575606447551,15.0675882669664,21.5537140451308,18.1688011511918,25.6652954828636,35.6727335589304,14.2213340630666,13.6389355837065,12.6679932737549,12.1325866803548,12.9027784082538,58.778899587908,32.9541548723911,30.3599321840738,21.9215144384742,22.1390877365816,20.4982791151567,24.5760397913623,24.2536521266274,27.6858363862499,48.2961852112505,35.384422077995,33.0004373892715,27.1635067706284,28.6076399349781,31.6865994070808,60.0200633873672,52.9900168238041,23.2465920239818,12.4607729486157,2.39961092397363,10.1656181658452,76.2434354570548,75.945100067892,59.4345085493849,72.6585658403716,62.9060025032613,67.3233264372975,53.53961681236,33.7088294344547,22.2688477392066,18.7014841240919,42.0883711772948,57.2529949035896,30.347077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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14000 | |||
|HGNC= | |||
|MCL_coexpression_id=399 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5HZJ0 | |||
|association_with_transcript=0bp_to_ENSMUST00000090292_5end | |||
|cluster_id=chr15:12754596..12754638,+ | |||
|description=CAGE_peak_1_at_Drosha_5end | |||
|id=chr15:12754596..12754638,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.47e-09!23;CL:0000337!4.47e-09!23;CL:0000540!2.49e-07!33;CL:0000047!2.49e-07!33;CL:0000031!2.49e-07!33;CL:0000404!2.49e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.47e-09,23;CL:0000337,4.47e-09,23;CL:0000540,2.49e-07,33;CL:0000047,2.49e-07,33;CL:0000031,2.49e-07,33;CL:0000404,2.49e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.95e-20!63;UBERON:0000955!9.20e-20!50;UBERON:0006238!9.20e-20!50;UBERON:0002616!3.95e-19!49;UBERON:0003056!5.69e-19!49;UBERON:0001049!7.31e-19!52;UBERON:0005068!7.31e-19!52;UBERON:0006241!7.31e-19!52;UBERON:0007135!7.31e-19!52;UBERON:0001017!8.03e-18!73;UBERON:0005743!8.03e-18!73;UBERON:0002346!3.22e-17!71;UBERON:0003075!3.22e-17!71;UBERON:0007284!3.22e-17!71;UBERON:0000073!4.90e-17!75;UBERON:0001016!4.90e-17!75;UBERON:0003080!5.84e-17!40;UBERON:0002780!2.98e-16!39;UBERON:0001890!2.98e-16!39;UBERON:0006240!2.98e-16!39;UBERON:0004121!9.09e-16!102;UBERON:0000924!9.09e-16!102;UBERON:0006601!9.09e-16!102;UBERON:0002791!8.05e-14!29;UBERON:0003528!8.05e-14!29;UBERON:0001893!8.05e-14!29;UBERON:0002020!8.68e-14!34;UBERON:0000153!3.03e-13!94;UBERON:0007811!1.50e-10!86;UBERON:0000468!1.97e-10!333;UBERON:0000956!7.29e-10!21;UBERON:0001869!7.29e-10!21;UBERON:0000203!7.29e-10!21;UBERON:0000922!2.18e-08!328;UBERON:0000025!6.78e-08!114;UBERON:0002619!1.04e-07!17;UBERON:0004111!5.24e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.45e-20,64;UBERON:0003075,2.45e-20,64;UBERON:0007284,2.45e-20,64;UBERON:0000073,2.39e-19,54;UBERON:0003056,5.69e-19,49;UBERON:0001049,7.31e-19,52;UBERON:0005068,7.31e-19,52;UBERON:0006241,7.31e-19,52;UBERON:0007135,7.31e-19,52;UBERON:0000955,1.22e-18,47;UBERON:0006238,1.22e-18,47;UBERON:0002616,5.14e-18,46;UBERON:0004121,6.77e-18,95;UBERON:0000924,6.77e-18,95;UBERON:0006601,6.77e-18,95;UBERON:0001017,8.03e-18,73;UBERON:0010371,1.06e-17,73;UBERON:0001016,4.90e-17,75;UBERON:0003080,5.84e-17,40;UBERON:0002780,2.98e-16,39;UBERON:0001890,2.98e-16,39;UBERON:0006240,2.98e-16,39;UBERON:0010314,1.21e-14,92;UBERON:0003528,8.05e-14,29;UBERON:0002791,8.05e-14,29;UBERON:0001893,8.05e-14,29;UBERON:0002020,8.68e-14,34;UBERON:0000956,7.29e-10,21;UBERON:0001869,7.29e-10,21;UBERON:0000203,7.29e-10,21;UBERON:0000922,4.85e-09,320;UBERON:0000025,6.78e-08,114;UBERON:0002619,1.04e-07,17;UBERON:0004111,5.24e-07,122 | |||
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| |||
|short_description=p1@Drosha | |||
}} |
Revision as of 02:34, 5 August 2015
Short description: | p1@Drosha |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Drosha_5end |
Coexpression cluster: | MCL_coexpression_mm9:399 |
Association with transcript: | 0bp_to_ENSMUST00000090292_5end |
EntrezGene: | 14000 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.47e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.47e-09 | 23 |
neuron | 2.49e-07 | 33 |
neuronal stem cell | 2.49e-07 | 33 |
neuroblast | 2.49e-07 | 33 |
electrically signaling cell | 2.49e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.45e-20 | 64 |
neural plate | 2.45e-20 | 64 |
presumptive neural plate | 2.45e-20 | 64 |
regional part of nervous system | 2.39e-19 | 54 |
pre-chordal neural plate | 5.69e-19 | 49 |
neural tube | 7.31e-19 | 52 |
neural rod | 7.31e-19 | 52 |
future spinal cord | 7.31e-19 | 52 |
neural keel | 7.31e-19 | 52 |
brain | 1.22e-18 | 47 |
future brain | 1.22e-18 | 47 |
regional part of brain | 5.14e-18 | 46 |
ectoderm-derived structure | 6.77e-18 | 95 |
ectoderm | 6.77e-18 | 95 |
presumptive ectoderm | 6.77e-18 | 95 |
central nervous system | 8.03e-18 | 73 |
ecto-epithelium | 1.06e-17 | 73 |
nervous system | 4.90e-17 | 75 |
anterior neural tube | 5.84e-17 | 40 |
regional part of forebrain | 2.98e-16 | 39 |
forebrain | 2.98e-16 | 39 |
future forebrain | 2.98e-16 | 39 |
structure with developmental contribution from neural crest | 1.21e-14 | 92 |
brain grey matter | 8.05e-14 | 29 |
regional part of telencephalon | 8.05e-14 | 29 |
telencephalon | 8.05e-14 | 29 |
gray matter | 8.68e-14 | 34 |
cerebral cortex | 7.29e-10 | 21 |
cerebral hemisphere | 7.29e-10 | 21 |
pallium | 7.29e-10 | 21 |
embryo | 4.85e-09 | 320 |
tube | 6.78e-08 | 114 |
regional part of cerebral cortex | 1.04e-07 | 17 |
anatomical conduit | 5.24e-07 | 122 |