FFCP PHASE1:Mm9::chr9:44529466..44529567,-: Difference between revisions
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{{FFCP|EntrezGene=102693|HGNC=|UniProt=D3YVQ3,D3YVB9|association_with_transcript=0bp_to_ENSMUST00000123406,ENSMUST00000148929_5end|description=CAGE_peak_2_at_Phldb1_5end|id=chr9:44529466..44529567,-|ontology_enrichment_celltype=CL:0002319!3.72e-18!43;CL:0000221!6.37e-18!44;CL:0000133!6.37e-18!44;CL:0000540!2.66e-15!33;CL:0000047!2.66e-15!33;CL:0000031!2.66e-15!33;CL:0000404!2.66e-15!33;CL:0000055!3.90e-14!50;CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000393!3.05e-12!39;CL:0000211!3.05e-12!39|ontology_enrichment_celltype_v019_2=CL:0002319,3.47e-18,43;CL:0000221,5.95e-18,44;CL:0000133,5.95e-18,44;CL:0000540,2.51e-15,33;CL:0000047,2.51e-15,33;CL:0000031,2.51e-15,33;CL:0000404,2.51e-15,33;CL:0000117,1.86e-13,23;CL:0000337,1.86e-13,23;CL:0000393,2.92e-12,39;CL:0000211,2.92e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.62e-29!73;UBERON:0005743!4.62e-29!73;UBERON:0000073!1.09e-28!75;UBERON:0001016!1.09e-28!75;UBERON:0004121!1.81e-27!102;UBERON:0000924!1.81e-27!102;UBERON:0006601!1.81e-27!102;UBERON:0001049!1.23e-19!52;UBERON:0005068!1.23e-19!52;UBERON:0006241!1.23e-19!52;UBERON:0007135!1.23e-19!52;UBERON:0000955!1.80e-19!50;UBERON:0006238!1.80e-19!50;UBERON:0002346!2.95e-19!71;UBERON:0003075!2.95e-19!71;UBERON:0007284!2.95e-19!71;UBERON:0000033!6.61e-19!63;UBERON:0002616!9.56e-19!49;UBERON:0003056!6.92e-14!49;UBERON:0003080!7.19e-14!40;UBERON:0002780!2.28e-13!39;UBERON:0001890!2.28e-13!39;UBERON:0006240!2.28e-13!39;UBERON:0002020!7.10e-13!34;UBERON:0002791!4.96e-11!29;UBERON:0003528!4.96e-11!29;UBERON:0001893!4.96e-11!29;UBERON:0000153!2.43e-08!94;UBERON:0007811!2.70e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.12e-29,73;UBERON:0001016,9.72e-29,75;UBERON:0004121,2.77e-28,95;UBERON:0000924,2.77e-28,95;UBERON:0006601,2.77e-28,95;UBERON:0010314,8.68e-24,92;UBERON:0000073,7.81e-21,54;UBERON:0002346,2.50e-20,64;UBERON:0003075,2.50e-20,64;UBERON:0007284,2.50e-20,64;UBERON:0010371,9.13e-20,73;UBERON:0001049,1.14e-19,52;UBERON:0005068,1.14e-19,52;UBERON:0006241,1.14e-19,52;UBERON:0007135,1.14e-19,52;UBERON:0000955,1.03e-17,47;UBERON:0006238,1.03e-17,47;UBERON:0002616,5.30e-17,46;UBERON:0003056,6.57e-14,49;UBERON:0003080,6.83e-14,40;UBERON:0002780,2.17e-13,39;UBERON:0001890,2.17e-13,39;UBERON:0006240,2.17e-13,39;UBERON:0002020,6.78e-13,34;UBERON:0003528,4.77e-11,29;UBERON:0002791,4.77e-11,29;UBERON:0001893,4.77e-11,29|phase1_expression=7.8472935081349,1.39590163055744,1.36499771816861,1.81478526784098,3.00537437967808,5.20425742926858,4.43864017131499,0,24.6380263765417,46.8129052643987,3.5955773327356,6.86040567359893,1.54080656938085,0.874204024189974,0.333109761815663,0.404950534779652,0,0.473193248037357,0,0,5.69790044012167,3.3758923408301,3.6567970479451,2.3998863419011,2.06468352960453,2.8711598205751,3.87685796543167,2.15471232685889,2.66032787238923,1.76421090831952,1.99557459589774,5.08024538767705,6.1506478758457,0,2.88851619751275,2.32728503501889,4.08338712524738,0,0,0.523523743973798,0,0,0.485510353031154,4.90997590104751,4.05507724878058,6.42413632565885,8.60630478782843,40.3346539303826,15.378032791413,15.748821825017,9.65906309215001,18.6878333674463,0,2.17608642603403,0.336093799142464,4.11615097657515,2.57880095944881,5.15672092277442,25.4918740683093,18.5146842745212,34.8607271928399,7.45457970552091,6.22506357277798,7.64914759689189,7.9109309005358,6.3943210345149,31.7576117149509,31.5059010363675,23.433852381716,26.5961698513431,22.2944459032465,13.9968982357864,11.4851641294839,22.9057794531964,23.8655222835409,40.4456266108409,36.3382407297983,18.6423513604374,19.0472101237742,39.3021137435978,35.1312551433253,29.6920621217353,23.1721889171146,18.0084035210138,18.9469827243245,13.258286346315,13.5253096759148,21.063137378259,6.43672643332064,7.93501381121248,3.18850937571846,0,0,0.539703191637817,0.649776417447669,0.448026887097336,2.38755514223978,0.681721290312231,1.03914401841148,1.06001872353102,7.46470124816407,1.28326477414318,5.09610479413291,0,4.32982082022428,4.30711771307668,5.05524445014783,2.05530983494308,0.258937883647172,6.53145411885229,11.6235168933311,8.52503339273995,7.14908041493781,5.87818298155228,5.52666923537813,4.27266410520897,6.67426412882809,10.7003524120735,2.65383165584962,7.60304194752823,2.42925670306433,4.363877278217,9.31958806090611,32.7914492652933,42.7271281899448,3.32094171771169,6.4700167233197,1.79970819298022,2.92261522268049,18.574039286198,24.2475319493872,22.8690920845413,12.1677024134594,13.5529192385075,19.1165000994795,26.9320496692478,4.68461073711455,2.73695335342205,1.76905930903572,1.26265113531884,12.6216829673823,9.42598628177239,10.4436035287103,9.94651797715719,13.8794458268709,10.3772113430728,10.2134879770104,4.9153640440413,17.2454394346274,12.6701073712439,12.1406275673125,9.42541649438572,6.39508673218875,4.179025998266,4.52720700097476,10.1507476077432,0.702213187313235,0.772043721344145,2.27330799516474,12.2204205795946,11.7263029990548,9.54328925743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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:102693 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YVQ3,uniprot:D3YVB9 | |||
|association_with_transcript=0bp_to_ENSMUST00000123406,ENSMUST00000148929_5end | |||
|cluster_id=chr9:44529466..44529567,- | |||
|description=CAGE_peak_2_at_Phldb1_5end | |||
|id=chr9:44529466..44529567,- | |||
|ontology_enrichment_celltype=CL:0002319!3.72e-18!43;CL:0000221!6.37e-18!44;CL:0000133!6.37e-18!44;CL:0000540!2.66e-15!33;CL:0000047!2.66e-15!33;CL:0000031!2.66e-15!33;CL:0000404!2.66e-15!33;CL:0000055!3.90e-14!50;CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000393!3.05e-12!39;CL:0000211!3.05e-12!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.47e-18,43;CL:0000221,5.95e-18,44;CL:0000133,5.95e-18,44;CL:0000540,2.51e-15,33;CL:0000047,2.51e-15,33;CL:0000031,2.51e-15,33;CL:0000404,2.51e-15,33;CL:0000117,1.86e-13,23;CL:0000337,1.86e-13,23;CL:0000393,2.92e-12,39;CL:0000211,2.92e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.62e-29!73;UBERON:0005743!4.62e-29!73;UBERON:0000073!1.09e-28!75;UBERON:0001016!1.09e-28!75;UBERON:0004121!1.81e-27!102;UBERON:0000924!1.81e-27!102;UBERON:0006601!1.81e-27!102;UBERON:0001049!1.23e-19!52;UBERON:0005068!1.23e-19!52;UBERON:0006241!1.23e-19!52;UBERON:0007135!1.23e-19!52;UBERON:0000955!1.80e-19!50;UBERON:0006238!1.80e-19!50;UBERON:0002346!2.95e-19!71;UBERON:0003075!2.95e-19!71;UBERON:0007284!2.95e-19!71;UBERON:0000033!6.61e-19!63;UBERON:0002616!9.56e-19!49;UBERON:0003056!6.92e-14!49;UBERON:0003080!7.19e-14!40;UBERON:0002780!2.28e-13!39;UBERON:0001890!2.28e-13!39;UBERON:0006240!2.28e-13!39;UBERON:0002020!7.10e-13!34;UBERON:0002791!4.96e-11!29;UBERON:0003528!4.96e-11!29;UBERON:0001893!4.96e-11!29;UBERON:0000153!2.43e-08!94;UBERON:0007811!2.70e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.12e-29,73;UBERON:0001016,9.72e-29,75;UBERON:0004121,2.77e-28,95;UBERON:0000924,2.77e-28,95;UBERON:0006601,2.77e-28,95;UBERON:0010314,8.68e-24,92;UBERON:0000073,7.81e-21,54;UBERON:0002346,2.50e-20,64;UBERON:0003075,2.50e-20,64;UBERON:0007284,2.50e-20,64;UBERON:0010371,9.13e-20,73;UBERON:0001049,1.14e-19,52;UBERON:0005068,1.14e-19,52;UBERON:0006241,1.14e-19,52;UBERON:0007135,1.14e-19,52;UBERON:0000955,1.03e-17,47;UBERON:0006238,1.03e-17,47;UBERON:0002616,5.30e-17,46;UBERON:0003056,6.57e-14,49;UBERON:0003080,6.83e-14,40;UBERON:0002780,2.17e-13,39;UBERON:0001890,2.17e-13,39;UBERON:0006240,2.17e-13,39;UBERON:0002020,6.78e-13,34;UBERON:0003528,4.77e-11,29;UBERON:0002791,4.77e-11,29;UBERON:0001893,4.77e-11,29 | |||
|phase1_expression=7.8472935081349,1.39590163055744,1.36499771816861,1.81478526784098,3.00537437967808,5.20425742926858,4.43864017131499,0,24.6380263765417,46.8129052643987,3.5955773327356,6.86040567359893,1.54080656938085,0.874204024189974,0.333109761815663,0.404950534779652,0,0.473193248037357,0,0,5.69790044012167,3.3758923408301,3.6567970479451,2.3998863419011,2.06468352960453,2.8711598205751,3.87685796543167,2.15471232685889,2.66032787238923,1.76421090831952,1.99557459589774,5.08024538767705,6.1506478758457,0,2.88851619751275,2.32728503501889,4.08338712524738,0,0,0.523523743973798,0,0,0.485510353031154,4.90997590104751,4.05507724878058,6.42413632565885,8.60630478782843,40.3346539303826,15.378032791413,15.748821825017,9.65906309215001,18.6878333674463,0,2.17608642603403,0.336093799142464,4.11615097657515,2.57880095944881,5.15672092277442,25.4918740683093,18.5146842745212,34.8607271928399,7.45457970552091,6.22506357277798,7.64914759689189,7.9109309005358,6.3943210345149,31.7576117149509,31.5059010363675,23.433852381716,26.5961698513431,22.2944459032465,13.9968982357864,11.4851641294839,22.9057794531964,23.8655222835409,40.4456266108409,36.3382407297983,18.6423513604374,19.0472101237742,39.3021137435978,35.1312551433253,29.6920621217353,23.1721889171146,18.0084035210138,18.9469827243245,13.258286346315,13.5253096759148,21.063137378259,6.43672643332064,7.93501381121248,3.18850937571846,0,0,0.539703191637817,0.649776417447669,0.448026887097336,2.38755514223978,0.681721290312231,1.03914401841148,1.06001872353102,7.46470124816407,1.28326477414318,5.09610479413291,0,4.32982082022428,4.30711771307668,5.05524445014783,2.05530983494308,0.258937883647172,6.53145411885229,11.6235168933311,8.52503339273995,7.14908041493781,5.87818298155228,5.52666923537813,4.27266410520897,6.67426412882809,10.7003524120735,2.65383165584962,7.60304194752823,2.42925670306433,4.363877278217,9.31958806090611,32.7914492652933,42.7271281899448,3.32094171771169,6.4700167233197,1.79970819298022,2.92261522268049,18.574039286198,24.2475319493872,22.8690920845413,12.1677024134594,13.5529192385075,19.1165000994795,26.9320496692478,4.68461073711455,2.73695335342205,1.76905930903572,1.26265113531884,12.6216829673823,9.42598628177239,10.4436035287103,9.94651797715719,13.8794458268709,10.3772113430728,10.2134879770104,4.9153640440413,17.2454394346274,12.6701073712439,12.1406275673125,9.42541649438572,6.39508673218875,4.179025998266,4.52720700097476,10.1507476077432,0.702213187313235,0.772043721344145,2.27330799516474,12.2204205795946,11.7263029990548,9.54328925743379,13.2577051927718,12.7896750635812,11.2614992407786,14.4171045745253,13.413670069981,13.8950757416932,17.2787842409154,11.1633875573785,16.294830718717,20.7603982143972,13.6121071480451,15.2995317386824,13.0379768109759,26.6522946062347,3.30418782983798,1.32225283331772,13.8637362847902,10.6828869055802,5.54130083685001,2.42020229548011,2.89091456998331,2.47293313946327,3.32170343081158,1.97638745668813,4.52403375840485,2.18852119245266,2.33956904542944,2.69645822596266,2.16138049874694,4.58024928485045,8.53505554288868,7.88314737007129,5.63538678365402,7.73875045812194,4.07300223052014,5.40045813155453,3.16182685621286,2.65698266363284,3.1399745568275,2.09775178667061,0.296452627087149,3.00321190288969,2.94838492669805,0.449724224769707,1.62288097110802,0.72353147925725,1.01850340712568,1.43848068725405,0.972811360650212,1.64736847912849,2.87536413054709,0.744281895337007,4.05648975048929,2.02063102357689,1.25578189465339,0.482443521363367,1.10851914099963,7.95863929436036,11.8964432802679,6.11082308790677,4.69380496577004,2.84760637651087,1.90434912708811,1.95133647857799,4.09851374676097,2.87904096543407,3.50800491046472,0.655453258862952,2.07221978239075,1.01254341007058,3.01582567878545,3.26343410291226,14.2611639175521,6.07060841870411,19.7477225684984,33.1709073055935,0.655739781506702,5.30188947129183,10.4117712407365,11.7131623288992,10.9865932843727,10.9925647058174,13.3679204449436,17.8338214396964,11.334699646897,13.4437694639203,13.4397844501818,53.33933852602,4.9679029822894,4.80777129901589,5.21238269931443,4.45419332025846,11.9470624505967,6.06951590387454,5.13950046840077,4.90373207365335,7.08724542913855,4.30409207121498,3.87642439752332,4.36240475373007,6.41695281092498,9.16506598013866,11.5960469432499,11.3449097573006,8.5109901438447,14.0447653344422,12.1597162755789,10.0738406464848,10.1083933176096,9.98865378571595,8.72109809191241,16.4411072521884,9.62154003061212,15.6755732439227,11.688005096913,5.44124634706884,9.36493674836252,8.62474826472629,8.71418111222896,4.76008609260678,2.33184669303881,27.2575193955449,0.341741761595705,3.714963623338,0.555583582109135,0.188368457004691,0.410082683163076,0,13.7682528295023,12.0358248998346,13.5435974328335,8.59203556213602,13.4442797271983,7.72613975082025,4.42821897369385,4.59994251231831,3.9305261474312,3.2367443132357,6.19900917940019,7.85267825952089,9.0730481304255,8.07741107013003,0.56369293868419,4.48549638131936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| |||
|short_description=p2@Phldb1 | |||
}} |
Revision as of 04:18, 5 August 2015
Short description: | p2@Phldb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Phldb1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000123406, ENSMUST00000148929_5end |
EntrezGene: | 102693 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.47e-18 | 43 |
ectodermal cell | 5.95e-18 | 44 |
neurectodermal cell | 5.95e-18 | 44 |
neuron | 2.51e-15 | 33 |
neuronal stem cell | 2.51e-15 | 33 |
neuroblast | 2.51e-15 | 33 |
electrically signaling cell | 2.51e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.86e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.86e-13 | 23 |
electrically responsive cell | 2.92e-12 | 39 |
electrically active cell | 2.92e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.12e-29 | 73 |
nervous system | 9.72e-29 | 75 |
ectoderm-derived structure | 2.77e-28 | 95 |
ectoderm | 2.77e-28 | 95 |
presumptive ectoderm | 2.77e-28 | 95 |
structure with developmental contribution from neural crest | 8.68e-24 | 92 |
regional part of nervous system | 7.81e-21 | 54 |
neurectoderm | 2.50e-20 | 64 |
neural plate | 2.50e-20 | 64 |
presumptive neural plate | 2.50e-20 | 64 |
ecto-epithelium | 9.13e-20 | 73 |
neural tube | 1.14e-19 | 52 |
neural rod | 1.14e-19 | 52 |
future spinal cord | 1.14e-19 | 52 |
neural keel | 1.14e-19 | 52 |
brain | 1.03e-17 | 47 |
future brain | 1.03e-17 | 47 |
regional part of brain | 5.30e-17 | 46 |
pre-chordal neural plate | 6.57e-14 | 49 |
anterior neural tube | 6.83e-14 | 40 |
regional part of forebrain | 2.17e-13 | 39 |
forebrain | 2.17e-13 | 39 |
future forebrain | 2.17e-13 | 39 |
gray matter | 6.78e-13 | 34 |
brain grey matter | 4.77e-11 | 29 |
regional part of telencephalon | 4.77e-11 | 29 |
telencephalon | 4.77e-11 | 29 |