FFCP PHASE1:Mm9::chr7:53040701..53040760,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=381983|HGNC=|MCL_coexpression_id=13|UniProt=Q5XJV6,D3Z2L9|association_with_transcript=0bp_to_ENSMUST00000120005,ENSMUST00000123585,uc009gxe.1_5end|description=CAGE_peak_1_at_Lmtk3_5end|id=chr7:53040701..53040760,+|ontology_enrichment_celltype=CL:0000540!2.13e-15!33;CL:0000047!2.13e-15!33;CL:0000031!2.13e-15!33;CL:0000404!2.13e-15!33;CL:0000221!3.62e-14!44;CL:0000133!3.62e-14!44;CL:0002319!4.61e-14!43;CL:0000117!9.65e-14!23;CL:0000337!9.65e-14!23;CL:0000393!8.51e-12!39;CL:0000211!8.51e-12!39;CL:0000055!1.58e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.35e-16,33;CL:0000047,4.35e-16,33;CL:0000031,4.35e-16,33;CL:0000404,4.35e-16,33;CL:0000117,2.39e-14,23;CL:0000337,2.39e-14,23;CL:0000221,3.40e-14,44;CL:0000133,3.40e-14,44;CL:0002319,4.42e-14,43;CL:0000393,5.56e-12,39;CL:0000211,5.56e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.57e-34!73;UBERON:0005743!1.57e-34!73;UBERON:0004121!2.68e-33!102;UBERON:0000924!2.68e-33!102;UBERON:0006601!2.68e-33!102;UBERON:0000073!3.43e-33!75;UBERON:0001016!3.43e-33!75;UBERON:0002346!1.73e-31!71;UBERON:0003075!1.73e-31!71;UBERON:0007284!1.73e-31!71;UBERON:0000033!1.40e-27!63;UBERON:0001049!4.38e-27!52;UBERON:0005068!4.38e-27!52;UBERON:0006241!4.38e-27!52;UBERON:0007135!4.38e-27!52;UBERON:0000955!1.44e-25!50;UBERON:0006238!1.44e-25!50;UBERON:0002616!7.37e-25!49;UBERON:0003056!4.44e-24!49;UBERON:0003080!4.06e-21!40;UBERON:0002780!2.15e-20!39;UBERON:0001890!2.15e-20!39;UBERON:0006240!2.15e-20!39;UBERON:0002020!2.22e-19!34;UBERON:0002791!3.62e-16!29;UBERON:0003528!3.62e-16!29;UBERON:0001893!3.62e-16!29;UBERON:0000153!2.87e-12!94;UBERON:0000956!3.12e-11!21;UBERON:0001869!3.12e-11!21;UBERON:0000203!3.12e-11!21;UBERON:0007811!3.63e-11!86;UBERON:0000468!6.72e-10!333;UBERON:0002619!2.56e-09!17;UBERON:0000922!3.04e-07!328;UBERON:0002021!6.10e-07!10;UBERON:0000411!6.10e-07!10;UBERON:0001950!6.10e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.51e-36,73;UBERON:0001016,5.22e-34,75;UBERON:0002346,1.06e-32,64;UBERON:0003075,1.06e-32,64;UBERON:0007284,1.06e-32,64;UBERON:0004121,1.96e-32,95;UBERON:0000924,1.96e-32,95;UBERON:0006601,1.96e-32,95;UBERON:0000073,1.10e-29,54;UBERON:0010371,1.70e-29,73;UBERON:0001049,2.32e-28,52;UBERON:0005068,2.32e-28,52;UBERON:0006241,2.32e-28,52;UBERON:0007135,2.32e-28,52;UBERON:0003056,3.33e-25,49;UBERON:0000955,7.29e-25,47;UBERON:0006238,7.29e-25,47;UBERON:0002616,3.92e-24,46;UBERON:0003080,4.29e-22,40;UBERON:0002780,2.47e-21,39;UBERON:0001890,2.47e-21,39;UBERON:0006240,2.47e-21,39;UBERON:0010314,2.88e-21,92;UBERON:0002020,2.87e-20,34;UBERON:0003528,6.78e-17,29;UBERON:0002791,6.78e-17,29;UBERON:0001893,6.78e-17,29;UBERON:0000956,1.03e-11,21;UBERON:0001869,1.03e-11,21;UBERON:0000203,1.03e-11,21;UBERON:0002619,1.05e-09,17;UBERON:0002021,3.28e-07,10;UBERON:0000411,3.28e-07,10;UBERON:0001950,3.28e-07,10;UBERON:0003076,9.53e-07,12;UBERON:0003057,9.53e-07,12|phase1_expression=9.92922852049723,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,1.33243904726265,0,0.699561878128147,0,0,0,22.9616883407888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38486499773135,1.21652317463417,1.28482726513177,3.12956537739216,5.01457859675027,7.90870257844099,7.58276606389705,2.65974201088189,7.18762821824858,0,0,0,0.257259436035947,0,0.515672092277442,118.962078985443,106.327186833679,108.385169999557,0.677689064138264,0,0,0,0,9.58720353658895,19.2109152660777,32.8696071017874,37.3966449178783,29.0248446664907,112.546487855099,92.1021815768228,44.7091417134582,51.6607088788294,53.3146896233812,92.4973400394865,92.3179454355907,89.3990023551337,136.634194088481,133.846422590325,126.581949045293,72.8667627393604,54.0252105630413,72.1207729506544,123.74400589894,110.765167661702,118.550047544891,0.454357159999104,0.831287161174641,1.73918693221007,0,0,0,0,0,3.37066608316204,0,0,0,10.9857867425811,0,0,0,0.432982082022428,0,0,2.62622923353838,0.258937883647172,13.2113503767694,8.32729568477452,10.9607572192371,4.84292544237723,7.68685466818375,10.2302175208063,5.6549966098354,0.247194967734374,0.144599356919912,0,0.647067399789637,0,0,1.86391761218122,105.108306127145,99.6966324432046,0.255457055208591,0,0,0,126.872671575885,146.857693504779,141.23549177486,141.666820956705,105.866199334757,121.556006067343,112.595436569024,3.56437773476107,0.870848794270651,0.505445516867349,9.25944165900485,18.0867415718158,13.3343220571414,14.945156773844,21.0986744970001,36.3995270459604,28.0569047423821,24.3624483855295,33.631438196072,12.287375597172,23.4491539408096,18.1229657888867,6.57587197282724,15.0145514581823,6.268538997399,6.37924622864625,6.17006227137329,0,0,0,1.86413195281952,3.98694301967864,1.2604344302271,3.31442629819294,1.37734962223183,1.69693824176116,1.39520366850245,0.536546802799238,0.467061369468678,0.16455984991348,0.820837320395476,0.324275238183423,0,0.219550115291051,0.536825675041487,153.091082554685,107.329510711594,0,1.05780226665418,13.650448034255,10.4506502337197,4.63922860759536,5.04208811558356,4.00280478920767,2.66315876557583,0,1.15289268306808,1.75934646160189,0.795825888164603,2.14460495831032,0,0.648414149624083,0.796565093017469,8.15571974098251,7.88314737007129,11.270773567308,9.16430975303914,7.5641469995374,8.83711330618014,8.60016904889899,4.28069429140846,3.1399745568275,4.44229790118482,0,1.33476084572875,1.17935397067922,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0,5.87423376488503,5.37784422258685,3.73439188705414,4.45911471748154,0.837531287209079,1.6663054862021,0,1.41871629695572,1.99318220683897,1.75400245523236,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,2.75936746304733,80.9174973538472,97.1684881849364,0,0.757412781613119,14.1978698737316,14.055794794679,19.6035291936847,14.8160654730582,13.590719119026,13.0215204162863,11.7395103485719,17.82760733259,16.602086673754,115.033031279007,1.27746076687442,6.05423052468668,5.70104357737516,6.43383479592888,0,4.12727081463468,2.72091201268276,3.01768127609437,2.36241514304618,2.45948118355142,3.6179961043551,2.90826983582004,1.78248689192361,1.58018378967908,0,0,47.6615448055303,19.6266592494128,28.0708343808577,14.7892554171799,20.3941268688615,18.5503570306153,20.0749805134588,20.7036165397928,0.23467170806371,0.21183207086382,0.441056796109924,1.15420377059036,1.45317984026315,1.68876189798836,2.02932984805332,1.96969079694074,0.874442509889552,89.1895702670552,0.512612642393558,1.03193433981611,0.185194527369712,0.188368457004691,0.956859594047176,0.228778173206523,0,0,0,1.90934123603023,14.2351197111511,5.89626454667861,4.42821897369385,3.3454127362315,4.36725127492355,2.69728692769641,2.81021749466142,1.57053565190418,0.90730481304255,0.621339313086926,0.56369293868419,5.23307911153926,2.15096037594227,4.86127970860119,3.35815541042101,4.56181538825101,3.0512882047896,1.8228613878153,1.57289016638566,0.966336483304024,1.44015003128933,0,2.8381530140623,1.84879722896689,0.51968329191118,0.358053391334963,0,0,0,0,0.0762068066549998,0,0,0,0,0.680191150845634,4.43971906748129,2.33256027184637,1.67884616364078,0.579568782096571,1.12609485270709,2.19781949120718,0.428736758158132,1.00314420807073,119.162638792201,94.8269987204784,108.277252040046,161.885697767754,72.6187470956881,83.8487226102568,81.0027000278167,101.32227072545,70.2370733925517,107.176384532627,6.2272408550506,46.2868853145196,26.4637088918908,24.5537784238977,11.738337107167,11.2144540154509,15.5572709461131,16.2767695218726,24.0689407193861,12.8875577999537,16.4761544928656,16.0332390178165,13.6716600906028,15.8782377964076,16.8860278729503,15.7176918123414,16.5714586101143,14.2752823143142,16.4834360321323,14.5726930933053,14.4005086001874,11.7134032065163,13.5908628269973,12.9358310802772,15.5280477685296,17.1767654020103,12.6220301282213,13.41655528333,15.2100607507365,16.8342681497322,13.64302708428,13.7906275325789,5.72923460437565,12.8597578184352,16.2041553224159,48.7130626978995,11.9305120307158,17.8342974860088,12.4337415844748,3.75005412503176,2.08681052058379|short_description=p1@Lmtk3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:381983 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5XJV6,uniprot:D3Z2L9 | |||
|association_with_transcript=0bp_to_ENSMUST00000120005,ENSMUST00000123585,uc009gxe.1_5end | |||
|cluster_id=chr7:53040701..53040760,+ | |||
|description=CAGE_peak_1_at_Lmtk3_5end | |||
|id=chr7:53040701..53040760,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.13e-15!33;CL:0000047!2.13e-15!33;CL:0000031!2.13e-15!33;CL:0000404!2.13e-15!33;CL:0000221!3.62e-14!44;CL:0000133!3.62e-14!44;CL:0002319!4.61e-14!43;CL:0000117!9.65e-14!23;CL:0000337!9.65e-14!23;CL:0000393!8.51e-12!39;CL:0000211!8.51e-12!39;CL:0000055!1.58e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.35e-16,33;CL:0000047,4.35e-16,33;CL:0000031,4.35e-16,33;CL:0000404,4.35e-16,33;CL:0000117,2.39e-14,23;CL:0000337,2.39e-14,23;CL:0000221,3.40e-14,44;CL:0000133,3.40e-14,44;CL:0002319,4.42e-14,43;CL:0000393,5.56e-12,39;CL:0000211,5.56e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.57e-34!73;UBERON:0005743!1.57e-34!73;UBERON:0004121!2.68e-33!102;UBERON:0000924!2.68e-33!102;UBERON:0006601!2.68e-33!102;UBERON:0000073!3.43e-33!75;UBERON:0001016!3.43e-33!75;UBERON:0002346!1.73e-31!71;UBERON:0003075!1.73e-31!71;UBERON:0007284!1.73e-31!71;UBERON:0000033!1.40e-27!63;UBERON:0001049!4.38e-27!52;UBERON:0005068!4.38e-27!52;UBERON:0006241!4.38e-27!52;UBERON:0007135!4.38e-27!52;UBERON:0000955!1.44e-25!50;UBERON:0006238!1.44e-25!50;UBERON:0002616!7.37e-25!49;UBERON:0003056!4.44e-24!49;UBERON:0003080!4.06e-21!40;UBERON:0002780!2.15e-20!39;UBERON:0001890!2.15e-20!39;UBERON:0006240!2.15e-20!39;UBERON:0002020!2.22e-19!34;UBERON:0002791!3.62e-16!29;UBERON:0003528!3.62e-16!29;UBERON:0001893!3.62e-16!29;UBERON:0000153!2.87e-12!94;UBERON:0000956!3.12e-11!21;UBERON:0001869!3.12e-11!21;UBERON:0000203!3.12e-11!21;UBERON:0007811!3.63e-11!86;UBERON:0000468!6.72e-10!333;UBERON:0002619!2.56e-09!17;UBERON:0000922!3.04e-07!328;UBERON:0002021!6.10e-07!10;UBERON:0000411!6.10e-07!10;UBERON:0001950!6.10e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.51e-36,73;UBERON:0001016,5.22e-34,75;UBERON:0002346,1.06e-32,64;UBERON:0003075,1.06e-32,64;UBERON:0007284,1.06e-32,64;UBERON:0004121,1.96e-32,95;UBERON:0000924,1.96e-32,95;UBERON:0006601,1.96e-32,95;UBERON:0000073,1.10e-29,54;UBERON:0010371,1.70e-29,73;UBERON:0001049,2.32e-28,52;UBERON:0005068,2.32e-28,52;UBERON:0006241,2.32e-28,52;UBERON:0007135,2.32e-28,52;UBERON:0003056,3.33e-25,49;UBERON:0000955,7.29e-25,47;UBERON:0006238,7.29e-25,47;UBERON:0002616,3.92e-24,46;UBERON:0003080,4.29e-22,40;UBERON:0002780,2.47e-21,39;UBERON:0001890,2.47e-21,39;UBERON:0006240,2.47e-21,39;UBERON:0010314,2.88e-21,92;UBERON:0002020,2.87e-20,34;UBERON:0003528,6.78e-17,29;UBERON:0002791,6.78e-17,29;UBERON:0001893,6.78e-17,29;UBERON:0000956,1.03e-11,21;UBERON:0001869,1.03e-11,21;UBERON:0000203,1.03e-11,21;UBERON:0002619,1.05e-09,17;UBERON:0002021,3.28e-07,10;UBERON:0000411,3.28e-07,10;UBERON:0001950,3.28e-07,10;UBERON:0003076,9.53e-07,12;UBERON:0003057,9.53e-07,12 | |||
|phase1_expression=9.92922852049723,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,1.33243904726265,0,0.699561878128147,0,0,0,22.9616883407888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38486499773135,1.21652317463417,1.28482726513177,3.12956537739216,5.01457859675027,7.90870257844099,7.58276606389705,2.65974201088189,7.18762821824858,0,0,0,0.257259436035947,0,0.515672092277442,118.962078985443,106.327186833679,108.385169999557,0.677689064138264,0,0,0,0,9.58720353658895,19.2109152660777,32.8696071017874,37.3966449178783,29.0248446664907,112.546487855099,92.1021815768228,44.7091417134582,51.6607088788294,53.3146896233812,92.4973400394865,92.3179454355907,89.3990023551337,136.634194088481,133.846422590325,126.581949045293,72.8667627393604,54.0252105630413,72.1207729506544,123.74400589894,110.765167661702,118.550047544891,0.454357159999104,0.831287161174641,1.73918693221007,0,0,0,0,0,3.37066608316204,0,0,0,10.9857867425811,0,0,0,0.432982082022428,0,0,2.62622923353838,0.258937883647172,13.2113503767694,8.32729568477452,10.9607572192371,4.84292544237723,7.68685466818375,10.2302175208063,5.6549966098354,0.247194967734374,0.144599356919912,0,0.647067399789637,0,0,1.86391761218122,105.108306127145,99.6966324432046,0.255457055208591,0,0,0,126.872671575885,146.857693504779,141.23549177486,141.666820956705,105.866199334757,121.556006067343,112.595436569024,3.56437773476107,0.870848794270651,0.505445516867349,9.25944165900485,18.0867415718158,13.3343220571414,14.945156773844,21.0986744970001,36.3995270459604,28.0569047423821,24.3624483855295,33.631438196072,12.287375597172,23.4491539408096,18.1229657888867,6.57587197282724,15.0145514581823,6.268538997399,6.37924622864625,6.17006227137329,0,0,0,1.86413195281952,3.98694301967864,1.2604344302271,3.31442629819294,1.37734962223183,1.69693824176116,1.39520366850245,0.536546802799238,0.467061369468678,0.16455984991348,0.820837320395476,0.324275238183423,0,0.219550115291051,0.536825675041487,153.091082554685,107.329510711594,0,1.05780226665418,13.650448034255,10.4506502337197,4.63922860759536,5.04208811558356,4.00280478920767,2.66315876557583,0,1.15289268306808,1.75934646160189,0.795825888164603,2.14460495831032,0,0.648414149624083,0.796565093017469,8.15571974098251,7.88314737007129,11.270773567308,9.16430975303914,7.5641469995374,8.83711330618014,8.60016904889899,4.28069429140846,3.1399745568275,4.44229790118482,0,1.33476084572875,1.17935397067922,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0,5.87423376488503,5.37784422258685,3.73439188705414,4.45911471748154,0.837531287209079,1.6663054862021,0,1.41871629695572,1.99318220683897,1.75400245523236,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,2.75936746304733,80.9174973538472,97.1684881849364,0,0.757412781613119,14.1978698737316,14.055794794679,19.6035291936847,14.8160654730582,13.590719119026,13.0215204162863,11.7395103485719,17.82760733259,16.602086673754,115.033031279007,1.27746076687442,6.05423052468668,5.70104357737516,6.43383479592888,0,4.12727081463468,2.72091201268276,3.01768127609437,2.36241514304618,2.45948118355142,3.6179961043551,2.90826983582004,1.78248689192361,1.58018378967908,0,0,47.6615448055303,19.6266592494128,28.0708343808577,14.7892554171799,20.3941268688615,18.5503570306153,20.0749805134588,20.7036165397928,0.23467170806371,0.21183207086382,0.441056796109924,1.15420377059036,1.45317984026315,1.68876189798836,2.02932984805332,1.96969079694074,0.874442509889552,89.1895702670552,0.512612642393558,1.03193433981611,0.185194527369712,0.188368457004691,0.956859594047176,0.228778173206523,0,0,0,1.90934123603023,14.2351197111511,5.89626454667861,4.42821897369385,3.3454127362315,4.36725127492355,2.69728692769641,2.81021749466142,1.57053565190418,0.90730481304255,0.621339313086926,0.56369293868419,5.23307911153926,2.15096037594227,4.86127970860119,3.35815541042101,4.56181538825101,3.0512882047896,1.8228613878153,1.57289016638566,0.966336483304024,1.44015003128933,0,2.8381530140623,1.84879722896689,0.51968329191118,0.358053391334963,0,0,0,0,0.0762068066549998,0,0,0,0,0.680191150845634,4.43971906748129,2.33256027184637,1.67884616364078,0.579568782096571,1.12609485270709,2.19781949120718,0.428736758158132,1.00314420807073,119.162638792201,94.8269987204784,108.277252040046,161.885697767754,72.6187470956881,83.8487226102568,81.0027000278167,101.32227072545,70.2370733925517,107.176384532627,6.2272408550506,46.2868853145196,26.4637088918908,24.5537784238977,11.738337107167,11.2144540154509,15.5572709461131,16.2767695218726,24.0689407193861,12.8875577999537,16.4761544928656,16.0332390178165,13.6716600906028,15.8782377964076,16.8860278729503,15.7176918123414,16.5714586101143,14.2752823143142,16.4834360321323,14.5726930933053,14.4005086001874,11.7134032065163,13.5908628269973,12.9358310802772,15.5280477685296,17.1767654020103,12.6220301282213,13.41655528333,15.2100607507365,16.8342681497322,13.64302708428,13.7906275325789,5.72923460437565,12.8597578184352,16.2041553224159,48.7130626978995,11.9305120307158,17.8342974860088,12.4337415844748,3.75005412503176,2.08681052058379 | |||
|short_description=p1@Lmtk3 | |||
}} |
Revision as of 09:14, 5 August 2015
Short description: | p1@Lmtk3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lmtk3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000120005, ENSMUST00000123585, uc009gxe.1_5end |
EntrezGene: | 381983 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.35e-16 | 33 |
neuronal stem cell | 4.35e-16 | 33 |
neuroblast | 4.35e-16 | 33 |
electrically signaling cell | 4.35e-16 | 33 |
CNS neuron (sensu Vertebrata) | 2.39e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.39e-14 | 23 |
ectodermal cell | 3.40e-14 | 44 |
neurectodermal cell | 3.40e-14 | 44 |
neural cell | 4.42e-14 | 43 |
electrically responsive cell | 5.56e-12 | 39 |
electrically active cell | 5.56e-12 | 39 |