FFCP PHASE1:Mm9::chr4:40649926..40649970,-: Difference between revisions
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{{FFCP|EntrezGene=66408|HGNC=|UniProt=Q7TQC5,B1AXX8|association_with_transcript=0bp_to_ENSMUST00000068125,NM_025545,uc008sho.1_5end|description=CAGE_peak_2_at_Aptx_5end|id=chr4:40649926..40649970,-|ontology_enrichment_celltype=CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000393!2.71e-09!39;CL:0000211!2.71e-09!39;CL:0000117!3.84e-08!23;CL:0000337!3.84e-08!23;CL:0002319!4.45e-07!43;CL:0000221!7.55e-07!44;CL:0000133!7.55e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,2.42e-10,33;CL:0000047,2.42e-10,33;CL:0000031,2.42e-10,33;CL:0000404,2.42e-10,33;CL:0000393,2.92e-09,39;CL:0000211,2.92e-09,39;CL:0000117,4.44e-08,23;CL:0000337,4.44e-08,23;CL:0002319,3.84e-07,43;CL:0000221,6.56e-07,44;CL:0000133,6.56e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.26e-19!73;UBERON:0005743!4.26e-19!73;UBERON:0000073!4.04e-18!75;UBERON:0001016!4.04e-18!75;UBERON:0002346!1.61e-17!71;UBERON:0003075!1.61e-17!71;UBERON:0007284!1.61e-17!71;UBERON:0000153!2.29e-17!94;UBERON:0004121!3.41e-17!102;UBERON:0000924!3.41e-17!102;UBERON:0006601!3.41e-17!102;UBERON:0000033!1.11e-16!63;UBERON:0003056!4.81e-16!49;UBERON:0000955!9.59e-16!50;UBERON:0006238!9.59e-16!50;UBERON:0002616!1.72e-15!49;UBERON:0003080!3.83e-15!40;UBERON:0007811!5.72e-15!86;UBERON:0001049!1.21e-14!52;UBERON:0005068!1.21e-14!52;UBERON:0006241!1.21e-14!52;UBERON:0007135!1.21e-14!52;UBERON:0002780!1.32e-14!39;UBERON:0001890!1.32e-14!39;UBERON:0006240!1.32e-14!39;UBERON:0002020!1.52e-09!34;UBERON:0002791!2.49e-09!29;UBERON:0003528!2.49e-09!29;UBERON:0001893!2.49e-09!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.13e-19,73;UBERON:0001016,2.11e-18,75;UBERON:0002346,4.28e-17,64;UBERON:0003075,4.28e-17,64;UBERON:0007284,4.28e-17,64;UBERON:0003056,3.85e-16,49;UBERON:0004121,4.19e-16,95;UBERON:0000924,4.19e-16,95;UBERON:0006601,4.19e-16,95;UBERON:0000073,4.59e-16,54;UBERON:0003080,3.29e-15,40;UBERON:0001049,6.68e-15,52;UBERON:0005068,6.68e-15,52;UBERON:0006241,6.68e-15,52;UBERON:0007135,6.68e-15,52;UBERON:0000955,9.68e-15,47;UBERON:0006238,9.68e-15,47;UBERON:0002780,1.16e-14,39;UBERON:0001890,1.16e-14,39;UBERON:0006240,1.16e-14,39;UBERON:0002616,1.74e-14,46;UBERON:0010371,3.54e-14,73;UBERON:0010314,3.48e-11,92;UBERON:0002020,1.58e-09,34;UBERON:0003528,2.68e-09,29;UBERON:0002791,2.68e-09,29;UBERON:0001893,2.68e-09,29;UBERON:0001894,8.11e-07,10;UBERON:0006222,8.11e-07,10|phase1_expression=3.36312578920067,0,0,0,0,0.16787927191189,0,1.42035655785734,0.140788722151667,0.468129052643987,0.856089841127525,0.398860794976682,1.19840510951844,2.09808965805594,0.333109761815663,0.202475267389826,0,3.47008381894061,2.74228867211478,2.12194825899015,2.12608225377674,1.78723712161594,1.56719873483361,0.639969691173627,0.22940928106717,0,0,0,0.380046838912748,0,0.221730510655305,0,1.84519436275371,0,0,0.332469290716985,0,1.67412652294763,1.5626706890476,3.14114246384279,4.1176204162171,1.36609096991689,4.85510353031154,2.51793635951155,2.02753862439029,3.67093504323363,0,1.30815093828268,1.97717564461025,2.91644848611425,3.07970127575798,1.43752564364972,2.68452169692378,0.725362142011344,1.68046899571232,1.28629718017973,1.43266719969378,0.515672092277442,4.45096213891115,5.28990979272033,5.70448263155561,3.04960078862219,0.889294796111139,0.899899717281399,1.97773272513395,0.7104801149461,0.599200221036809,0.384218305321555,2.38486108309499,3.51015439662396,3.15487442027073,1.42825492201902,1.76694832761291,5.51208596467293,4.79227355091182,0.919218786610021,3.30347642998166,3.70293280447044,3.37934373163736,4.87979264601717,6.77008562657831,4.16730696445408,3.35019598801657,3.37657566019008,3.81995619442025,2.06240009831567,4.12877874317399,3.54158947068071,1.13589289999776,1.13357340160178,0.579728977403356,0.860423876981386,0,0,0,0,0.842666520790511,1.1930122580464,2.59786004602869,2.12003744706204,1.40843419776681,2.56652954828636,2.54805239706646,0,1.29894624606728,2.02687892380079,1.51657333504435,1.1418387971906,4.40194402200192,2.22663208597237,3.99016251562112,2.13125834818499,2.30615497256059,1.65794904607885,2.70454026412121,2.26199864393416,0.494389935468748,1.44599356919912,0.884610551949874,1.61766849947409,1.32504911076236,0.969750506270444,0,1.75668478206928,2.09446706813455,0.255457055208591,1.07833612055328,2.39961092397363,1.27070227073065,4.19413790333504,3.66000482254901,5.40313714085317,2.78118912307642,4.09144731728529,3.32460871295296,3.40706652442291,0.203678727700633,1.99051152976149,4.29628689337247,0.420883711772948,4.16385417480652,3.67843367093557,2.70093194708024,3.0140963567143,2.31324097114515,2.0498195245576,3.09215691047105,2.58703370739016,4.95806383745537,5.29497024469894,5.27853372491847,2.6303487891309,2.22437799380478,1.39300866608867,2.26360350048738,3.18454826909589,1.40442637462647,0.257347907114715,0.284163499395593,1.86413195281952,1.17263029990548,2.70093092191522,2.3674473558521,1.96764231747404,2.00547246753592,0.6976018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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66408 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q7TQC5,uniprot:B1AXX8 | |||
|association_with_transcript=0bp_to_ENSMUST00000068125,NM_025545,uc008sho.1_5end | |||
|cluster_id=chr4:40649926..40649970,- | |||
|description=CAGE_peak_2_at_Aptx_5end | |||
|id=chr4:40649926..40649970,- | |||
|ontology_enrichment_celltype=CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000393!2.71e-09!39;CL:0000211!2.71e-09!39;CL:0000117!3.84e-08!23;CL:0000337!3.84e-08!23;CL:0002319!4.45e-07!43;CL:0000221!7.55e-07!44;CL:0000133!7.55e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.42e-10,33;CL:0000047,2.42e-10,33;CL:0000031,2.42e-10,33;CL:0000404,2.42e-10,33;CL:0000393,2.92e-09,39;CL:0000211,2.92e-09,39;CL:0000117,4.44e-08,23;CL:0000337,4.44e-08,23;CL:0002319,3.84e-07,43;CL:0000221,6.56e-07,44;CL:0000133,6.56e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.26e-19!73;UBERON:0005743!4.26e-19!73;UBERON:0000073!4.04e-18!75;UBERON:0001016!4.04e-18!75;UBERON:0002346!1.61e-17!71;UBERON:0003075!1.61e-17!71;UBERON:0007284!1.61e-17!71;UBERON:0000153!2.29e-17!94;UBERON:0004121!3.41e-17!102;UBERON:0000924!3.41e-17!102;UBERON:0006601!3.41e-17!102;UBERON:0000033!1.11e-16!63;UBERON:0003056!4.81e-16!49;UBERON:0000955!9.59e-16!50;UBERON:0006238!9.59e-16!50;UBERON:0002616!1.72e-15!49;UBERON:0003080!3.83e-15!40;UBERON:0007811!5.72e-15!86;UBERON:0001049!1.21e-14!52;UBERON:0005068!1.21e-14!52;UBERON:0006241!1.21e-14!52;UBERON:0007135!1.21e-14!52;UBERON:0002780!1.32e-14!39;UBERON:0001890!1.32e-14!39;UBERON:0006240!1.32e-14!39;UBERON:0002020!1.52e-09!34;UBERON:0002791!2.49e-09!29;UBERON:0003528!2.49e-09!29;UBERON:0001893!2.49e-09!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.13e-19,73;UBERON:0001016,2.11e-18,75;UBERON:0002346,4.28e-17,64;UBERON:0003075,4.28e-17,64;UBERON:0007284,4.28e-17,64;UBERON:0003056,3.85e-16,49;UBERON:0004121,4.19e-16,95;UBERON:0000924,4.19e-16,95;UBERON:0006601,4.19e-16,95;UBERON:0000073,4.59e-16,54;UBERON:0003080,3.29e-15,40;UBERON:0001049,6.68e-15,52;UBERON:0005068,6.68e-15,52;UBERON:0006241,6.68e-15,52;UBERON:0007135,6.68e-15,52;UBERON:0000955,9.68e-15,47;UBERON:0006238,9.68e-15,47;UBERON:0002780,1.16e-14,39;UBERON:0001890,1.16e-14,39;UBERON:0006240,1.16e-14,39;UBERON:0002616,1.74e-14,46;UBERON:0010371,3.54e-14,73;UBERON:0010314,3.48e-11,92;UBERON:0002020,1.58e-09,34;UBERON:0003528,2.68e-09,29;UBERON:0002791,2.68e-09,29;UBERON:0001893,2.68e-09,29;UBERON:0001894,8.11e-07,10;UBERON:0006222,8.11e-07,10 | |||
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| |||
|short_description=p2@Aptx | |||
}} |
Revision as of 10:25, 5 August 2015
Short description: | p2@Aptx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Aptx_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000068125, NM_025545, uc008sho.1_5end |
EntrezGene: | 66408 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.42e-10 | 33 |
neuronal stem cell | 2.42e-10 | 33 |
neuroblast | 2.42e-10 | 33 |
electrically signaling cell | 2.42e-10 | 33 |
electrically responsive cell | 2.92e-09 | 39 |
electrically active cell | 2.92e-09 | 39 |
CNS neuron (sensu Vertebrata) | 4.44e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.44e-08 | 23 |
neural cell | 3.84e-07 | 43 |
ectodermal cell | 6.56e-07 | 44 |
neurectodermal cell | 6.56e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.13e-19 | 73 |
nervous system | 2.11e-18 | 75 |
neurectoderm | 4.28e-17 | 64 |
neural plate | 4.28e-17 | 64 |
presumptive neural plate | 4.28e-17 | 64 |
pre-chordal neural plate | 3.85e-16 | 49 |
ectoderm-derived structure | 4.19e-16 | 95 |
ectoderm | 4.19e-16 | 95 |
presumptive ectoderm | 4.19e-16 | 95 |
regional part of nervous system | 4.59e-16 | 54 |
anterior neural tube | 3.29e-15 | 40 |
neural tube | 6.68e-15 | 52 |
neural rod | 6.68e-15 | 52 |
future spinal cord | 6.68e-15 | 52 |
neural keel | 6.68e-15 | 52 |
brain | 9.68e-15 | 47 |
future brain | 9.68e-15 | 47 |
regional part of forebrain | 1.16e-14 | 39 |
forebrain | 1.16e-14 | 39 |
future forebrain | 1.16e-14 | 39 |
regional part of brain | 1.74e-14 | 46 |
ecto-epithelium | 3.54e-14 | 73 |
structure with developmental contribution from neural crest | 3.48e-11 | 92 |
gray matter | 1.58e-09 | 34 |
brain grey matter | 2.68e-09 | 29 |
regional part of telencephalon | 2.68e-09 | 29 |
telencephalon | 2.68e-09 | 29 |
diencephalon | 8.11e-07 | 10 |
future diencephalon | 8.11e-07 | 10 |