FFCP PHASE1:Mm9::chr18:20904768..20904834,-: Difference between revisions
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{{FFCP|EntrezGene=56386|HGNC=|MCL_coexpression_id=240|UniProt=Q9WVK5,Q3UUA9|association_with_transcript=70bp_to_ENSMUST00000070080,NM_019737,uc008eeu.2_5end|description=CAGE_peak_2_at_B4galt6_5end|id=chr18:20904768..20904834,-|ontology_enrichment_celltype=CL:0002319!1.24e-08!43;CL:0000221!1.26e-08!44;CL:0000133!1.26e-08!44;CL:0000540!3.78e-08!33;CL:0000047!3.78e-08!33;CL:0000031!3.78e-08!33;CL:0000404!3.78e-08!33|ontology_enrichment_celltype_v019_2=CL:0002319,1.21e-08,43;CL:0000221,1.23e-08,44;CL:0000133,1.23e-08,44;CL:0000540,3.71e-08,33;CL:0000047,3.71e-08,33;CL:0000031,3.71e-08,33;CL:0000404,3.71e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.82e-20!75;UBERON:0001016!2.82e-20!75;UBERON:0001017!4.49e-20!73;UBERON:0005743!4.49e-20!73;UBERON:0004121!2.10e-13!102;UBERON:0000924!2.10e-13!102;UBERON:0006601!2.10e-13!102;UBERON:0001049!3.03e-13!52;UBERON:0005068!3.03e-13!52;UBERON:0006241!3.03e-13!52;UBERON:0007135!3.03e-13!52;UBERON:0000955!2.40e-12!50;UBERON:0006238!2.40e-12!50;UBERON:0002616!7.97e-12!49;UBERON:0000033!5.68e-11!63;UBERON:0002346!6.95e-11!71;UBERON:0003075!6.95e-11!71;UBERON:0007284!6.95e-11!71;UBERON:0002020!1.02e-09!34;UBERON:0003080!4.03e-09!40;UBERON:0002780!1.07e-08!39;UBERON:0001890!1.07e-08!39;UBERON:0006240!1.07e-08!39;UBERON:0003056!3.45e-08!49;UBERON:0002791!2.48e-07!29;UBERON:0003528!2.48e-07!29;UBERON:0001893!2.48e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.66e-20,75;UBERON:0001017,4.24e-20,73;UBERON:0004121,2.01e-15,95;UBERON:0000924,2.01e-15,95;UBERON:0006601,2.01e-15,95;UBERON:0000073,2.18e-14,54;UBERON:0001049,2.93e-13,52;UBERON:0005068,2.93e-13,52;UBERON:0006241,2.93e-13,52;UBERON:0007135,2.93e-13,52;UBERON:0002346,3.35e-13,64;UBERON:0003075,3.35e-13,64;UBERON:0007284,3.35e-13,64;UBERON:0010314,5.12e-13,92;UBERON:0000955,6.53e-11,47;UBERON:0006238,6.53e-11,47;UBERON:0002616,2.09e-10,46;UBERON:0010371,2.93e-10,73;UBERON:0002020,9.93e-10,34;UBERON:0003080,3.94e-09,40;UBERON:0002780,1.05e-08,39;UBERON:0001890,1.05e-08,39;UBERON:0006240,1.05e-08,39;UBERON:0003056,3.39e-08,49;UBERON:0003528,2.44e-07,29;UBERON:0002791,2.44e-07,29;UBERON:0001893,2.44e-07,29|phase1_expression=7.36684696682052,65.6073766361999,97.3698372293607,37.8080264133538,43.0770327753859,23.1673395238408,19.8570744506197,0,0,0,0,0,0,0.0874204024189974,0.333109761815663,0,0.699561878128147,0.315462165358238,0.822686601634433,0,9.60989178707088,0,0,29.918583062367,40.1466241867548,49.9581808780068,37.4762936658395,33.6135122989987,20.7125527207448,21.674591159354,32.1509240450192,0,0,0,3.17736781726402,5.98444723290572,5.10423390655923,8.37063261473815,5.4693474116666,5.23523743973798,5.29408339227913,6.83045484958446,3.39857247121808,7.1761186246079,7.80602370390262,8.44315059943735,4.69434806608824,10.4652075062614,11.2039953194581,18.2764105129826,5.73944328663986,10.062679505548,0.167782606057736,0,0,5.14518872071894,8.02293631828519,3.09403255366465,14.3644687210314,17.9856932952491,17.1134478946668,10.165335962074,5.33576877666684,38.2457379844595,44.4989863155138,35.524005747305,27.2636100571748,16.1371688235053,7.8804105354443,5.53524347159932,6.30974884054146,28.5650984403804,26.9459619960969,6.36952155917761,4.88811902193005,4.5960939330501,30.8324466798288,28.7296510691672,25.4986845205364,17.9365351313064,17.7486028588675,15.6274011167028,18.1468949350898,28.138130501584,30.4068513075852,35.0608016713665,37.4437520501641,22.1815340532108,9.46577416664801,15.0387404612503,11.3047150593654,1.72084775396277,0.679971333707751,0.539703191637817,0,0.448026887097336,6.03911006566533,8.862376774059,6.49465011507172,7.0667914902068,9.85903938436764,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,8.67797485864856,8.02707439306232,7.12522267511159,5.89850111004862,4.87144765299426,4.15107895060905,6.33035090321015,7.76085467095652,3.64433114856059,2.71914464507811,6.65157041831594,19.4614321428972,11.0001457964238,7.50861162765338,4.84875253135222,24.2309289583559,31.6203260772471,28.9036455402568,25.5457055208591,2.51611761462433,1.79970819298022,1.52484272487678,26.5129431746536,27.4500361691176,10.4293112253677,35.1125126788398,27.6172693916757,29.298114282898,21.415846724944,7.84163101647435,4.97627882440372,0.758168275301024,3.99839526184301,10.7999967659044,6.89706313300419,11.7040384373477,9.34369870581433,9.59314638033723,7.17436833595159,9.55757590509234,8.2785078636485,9.05385570317937,12.4810012910761,8.09375171154165,9.86380795924087,6.67313398141435,7.3132954969655,8.0255033199098,6.56813080501028,4.21327912387941,10.808612098818,8.24074148247219,19.0555710732662,18.9966108584688,15.3052752241863,17.2823656977203,16.9217239302767,16.1980468531747,16.0448421877781,15.5598572811779,11.6765342367169,13.9875872426458,13.1333971263276,13.6195600037038,11.2573990317506,12.2948064562988,9.66286215074677,33.8566817188245,20.5809224758569,31.059365600477,21.9493970330742,13.2238715331845,10.4506502337197,9.9227945218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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56386 | |||
|HGNC= | |||
|MCL_coexpression_id=240 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9WVK5,uniprot:Q3UUA9 | |||
|association_with_transcript=70bp_to_ENSMUST00000070080,NM_019737,uc008eeu.2_5end | |||
|cluster_id=chr18:20904768..20904834,- | |||
|description=CAGE_peak_2_at_B4galt6_5end | |||
|id=chr18:20904768..20904834,- | |||
|ontology_enrichment_celltype=CL:0002319!1.24e-08!43;CL:0000221!1.26e-08!44;CL:0000133!1.26e-08!44;CL:0000540!3.78e-08!33;CL:0000047!3.78e-08!33;CL:0000031!3.78e-08!33;CL:0000404!3.78e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.21e-08,43;CL:0000221,1.23e-08,44;CL:0000133,1.23e-08,44;CL:0000540,3.71e-08,33;CL:0000047,3.71e-08,33;CL:0000031,3.71e-08,33;CL:0000404,3.71e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.82e-20!75;UBERON:0001016!2.82e-20!75;UBERON:0001017!4.49e-20!73;UBERON:0005743!4.49e-20!73;UBERON:0004121!2.10e-13!102;UBERON:0000924!2.10e-13!102;UBERON:0006601!2.10e-13!102;UBERON:0001049!3.03e-13!52;UBERON:0005068!3.03e-13!52;UBERON:0006241!3.03e-13!52;UBERON:0007135!3.03e-13!52;UBERON:0000955!2.40e-12!50;UBERON:0006238!2.40e-12!50;UBERON:0002616!7.97e-12!49;UBERON:0000033!5.68e-11!63;UBERON:0002346!6.95e-11!71;UBERON:0003075!6.95e-11!71;UBERON:0007284!6.95e-11!71;UBERON:0002020!1.02e-09!34;UBERON:0003080!4.03e-09!40;UBERON:0002780!1.07e-08!39;UBERON:0001890!1.07e-08!39;UBERON:0006240!1.07e-08!39;UBERON:0003056!3.45e-08!49;UBERON:0002791!2.48e-07!29;UBERON:0003528!2.48e-07!29;UBERON:0001893!2.48e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.66e-20,75;UBERON:0001017,4.24e-20,73;UBERON:0004121,2.01e-15,95;UBERON:0000924,2.01e-15,95;UBERON:0006601,2.01e-15,95;UBERON:0000073,2.18e-14,54;UBERON:0001049,2.93e-13,52;UBERON:0005068,2.93e-13,52;UBERON:0006241,2.93e-13,52;UBERON:0007135,2.93e-13,52;UBERON:0002346,3.35e-13,64;UBERON:0003075,3.35e-13,64;UBERON:0007284,3.35e-13,64;UBERON:0010314,5.12e-13,92;UBERON:0000955,6.53e-11,47;UBERON:0006238,6.53e-11,47;UBERON:0002616,2.09e-10,46;UBERON:0010371,2.93e-10,73;UBERON:0002020,9.93e-10,34;UBERON:0003080,3.94e-09,40;UBERON:0002780,1.05e-08,39;UBERON:0001890,1.05e-08,39;UBERON:0006240,1.05e-08,39;UBERON:0003056,3.39e-08,49;UBERON:0003528,2.44e-07,29;UBERON:0002791,2.44e-07,29;UBERON:0001893,2.44e-07,29 | |||
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| |||
|short_description=p2@B4galt6 | |||
}} |
Revision as of 13:59, 5 August 2015
Short description: | p2@B4galt6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_B4galt6_5end |
Coexpression cluster: | MCL_coexpression_mm9:240 |
Association with transcript: | 70bp_to_ENSMUST00000070080, NM_019737, uc008eeu.2_5end |
EntrezGene: | 56386 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.21e-08 | 43 |
ectodermal cell | 1.23e-08 | 44 |
neurectodermal cell | 1.23e-08 | 44 |
neuron | 3.71e-08 | 33 |
neuronal stem cell | 3.71e-08 | 33 |
neuroblast | 3.71e-08 | 33 |
electrically signaling cell | 3.71e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.66e-20 | 75 |
central nervous system | 4.24e-20 | 73 |
ectoderm-derived structure | 2.01e-15 | 95 |
ectoderm | 2.01e-15 | 95 |
presumptive ectoderm | 2.01e-15 | 95 |
regional part of nervous system | 2.18e-14 | 54 |
neural tube | 2.93e-13 | 52 |
neural rod | 2.93e-13 | 52 |
future spinal cord | 2.93e-13 | 52 |
neural keel | 2.93e-13 | 52 |
neurectoderm | 3.35e-13 | 64 |
neural plate | 3.35e-13 | 64 |
presumptive neural plate | 3.35e-13 | 64 |
structure with developmental contribution from neural crest | 5.12e-13 | 92 |
brain | 6.53e-11 | 47 |
future brain | 6.53e-11 | 47 |
regional part of brain | 2.09e-10 | 46 |
ecto-epithelium | 2.93e-10 | 73 |
gray matter | 9.93e-10 | 34 |
anterior neural tube | 3.94e-09 | 40 |
regional part of forebrain | 1.05e-08 | 39 |
forebrain | 1.05e-08 | 39 |
future forebrain | 1.05e-08 | 39 |
pre-chordal neural plate | 3.39e-08 | 49 |
brain grey matter | 2.44e-07 | 29 |
regional part of telencephalon | 2.44e-07 | 29 |
telencephalon | 2.44e-07 | 29 |