FFCP PHASE1:Mm9::chr15:80003982..80004010,+: Difference between revisions
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{{FFCP|EntrezGene=17309|HGNC=|UniProt=Q5RKT9|association_with_transcript=-140bp_to_ENSMUST00000044970,NM_010795,uc007wvf.1_5end|description=CAGE_peak_2_at_Mgat3_5end|id=chr15:80003982..80004010,+|ontology_enrichment_celltype=CL:0000221!5.65e-15!44;CL:0000133!5.65e-15!44;CL:0002319!1.42e-14!43;CL:0000540!3.52e-14!33;CL:0000047!3.52e-14!33;CL:0000031!3.52e-14!33;CL:0000404!3.52e-14!33;CL:0000055!2.36e-12!50;CL:0000117!3.31e-12!23;CL:0000337!3.31e-12!23;CL:0000393!4.91e-12!39;CL:0000211!4.91e-12!39;CL:0002321!2.29e-08!70;CL:0000220!2.29e-08!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.52e-15,44;CL:0000133,1.52e-15,44;CL:0002319,3.96e-15,43;CL:0000540,1.02e-14,33;CL:0000047,1.02e-14,33;CL:0000031,1.02e-14,33;CL:0000404,1.02e-14,33;CL:0000117,1.17e-12,23;CL:0000337,1.17e-12,23;CL:0000393,3.49e-12,39;CL:0000211,3.49e-12,39;CL:0002321,8.95e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.16e-28!73;UBERON:0005743!6.16e-28!73;UBERON:0000073!3.08e-27!75;UBERON:0001016!3.08e-27!75;UBERON:0001049!4.32e-20!52;UBERON:0005068!4.32e-20!52;UBERON:0006241!4.32e-20!52;UBERON:0007135!4.32e-20!52;UBERON:0004121!5.71e-20!102;UBERON:0000924!5.71e-20!102;UBERON:0006601!5.71e-20!102;UBERON:0000955!1.01e-18!50;UBERON:0006238!1.01e-18!50;UBERON:0002346!1.10e-18!71;UBERON:0003075!1.10e-18!71;UBERON:0007284!1.10e-18!71;UBERON:0002616!3.95e-18!49;UBERON:0000033!3.83e-16!63;UBERON:0003080!5.35e-13!40;UBERON:0002020!1.38e-12!34;UBERON:0002780!1.98e-12!39;UBERON:0001890!1.98e-12!39;UBERON:0006240!1.98e-12!39;UBERON:0003056!2.82e-11!49;UBERON:0007811!6.38e-10!86;UBERON:0002791!1.18e-09!29;UBERON:0003528!1.18e-09!29;UBERON:0001893!1.18e-09!29;UBERON:0000153!1.44e-09!94;UBERON:0000468!2.92e-08!333;UBERON:0003076!3.18e-08!12;UBERON:0003057!3.18e-08!12;UBERON:0000922!1.10e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.61e-29,73;UBERON:0001016,2.47e-28,75;UBERON:0000073,2.99e-22,54;UBERON:0001049,7.02e-21,52;UBERON:0005068,7.02e-21,52;UBERON:0006241,7.02e-21,52;UBERON:0007135,7.02e-21,52;UBERON:0004121,1.81e-19,95;UBERON:0000924,1.81e-19,95;UBERON:0006601,1.81e-19,95;UBERON:0002346,7.97e-19,64;UBERON:0003075,7.97e-19,64;UBERON:0007284,7.97e-19,64;UBERON:0000955,2.04e-17,47;UBERON:0006238,2.04e-17,47;UBERON:0002616,8.20e-17,46;UBERON:0010371,2.56e-14,73;UBERON:0003080,1.74e-13,40;UBERON:0002020,4.68e-13,34;UBERON:0002780,6.84e-13,39;UBERON:0001890,6.84e-13,39;UBERON:0006240,6.84e-13,39;UBERON:0003056,1.89e-11,49;UBERON:0011216,2.40e-10,194;UBERON:0003528,5.35e-10,29;UBERON:0002791,5.35e-10,29;UBERON:0001893,5.35e-10,29;UBERON:0010314,7.35e-10,92;UBERON:0003076,1.65e-08,12;UBERON:0003057,1.65e-08,12|phase1_expression=2.24208385946712,0.697950815278722,2.27499619694768,1.51232105653415,0.500895729946347,1.17515490338323,1.63528848416868,0,0,0,0,0,0,0,0,0.404950534779652,0,0,0,0,2.12608225377674,0,0,0.319984845586813,0.68822784320151,0.57423196411502,0.430761996159075,0,0,0.756090389279792,0.443461021310609,0,0,0,0,0.498703936075477,0.204169356262369,0,0,0,0,0,0,1.76255545165808,2.33166941804883,2.75320128242522,5.47673941043627,2.8343270329458,2.19686182734472,1.94429899074283,2.09979632438044,1.43752564364972,0,0,0,0.771778308107841,0.286533439938757,1.03134418455488,6.06949382578793,4.23192783417626,5.07065122804943,1.69422266034566,2.66788438833342,0.899899717281399,0.988866362566974,0,8.98800331555214,6.91592949578798,3.42175720617976,3.37514845829227,3.36519938162211,11.7116903605559,11.0434270475807,4.16468717330844,3.06705507258356,6.43453150627015,7.70811166995721,13.0241084846891,11.5204899942183,5.93488294785872,5.58074625974699,5.2091337055676,12.5632349550621,4.50210088025344,11.4598685832608,7.95497180778903,8.96941589034349,8.76077395378913,1.21161909333094,1.73814588245607,0.289864488701678,0.860423876981386,0,0,0,0,2.10666630197628,2.04516387093669,1.03914401841148,1.7666978725517,4.50698943285378,2.56652954828636,7.64415719119937,0,14.9378818297738,10.1343946190039,11.62706223534,1.1418387971906,0.258937883647172,1.7813056687779,3.46970653532272,1.82679286987285,3.92046345335299,2.41156224884196,2.11659672844269,1.50799909595611,0.247194967734374,0.144599356919912,0,0.323533699894818,0,1.93950101254089,0,8.78342391034641,11.7290155815535,2.04365644166873,0,0,0,8.68785708547972,4.11750542536764,4.27224797183739,5.9100268865374,6.39288643325826,8.72709787150152,8.59878694259116,3.46253837091075,0.746441823660558,1.0108910337347,0.841767423545896,1.82168620147785,1.37941262660084,2.52086981727489,1.65775299619287,1.63287597963187,1.92170580427275,1.87403449119458,1.55222022443409,2.37124792226126,3.02569728268511,2.81521798662318,2.6303487891309,1.39023624612799,1.39300866608867,0.411564272815887,4.57778813682534,0,0,0,1.03562886267751,0.234526059981096,0.540186184383045,1.42046841351126,1.18058539048442,0.771335564436891,0.465067889500816,0.804820204198858,0.233530684734339,0.329119699826961,0.656669856316381,0.486412857275134,0.584799949701329,0.43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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:17309 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5RKT9 | |||
|association_with_transcript=-140bp_to_ENSMUST00000044970,NM_010795,uc007wvf.1_5end | |||
|cluster_id=chr15:80003982..80004010,+ | |||
|description=CAGE_peak_2_at_Mgat3_5end | |||
|id=chr15:80003982..80004010,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.65e-15!44;CL:0000133!5.65e-15!44;CL:0002319!1.42e-14!43;CL:0000540!3.52e-14!33;CL:0000047!3.52e-14!33;CL:0000031!3.52e-14!33;CL:0000404!3.52e-14!33;CL:0000055!2.36e-12!50;CL:0000117!3.31e-12!23;CL:0000337!3.31e-12!23;CL:0000393!4.91e-12!39;CL:0000211!4.91e-12!39;CL:0002321!2.29e-08!70;CL:0000220!2.29e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.52e-15,44;CL:0000133,1.52e-15,44;CL:0002319,3.96e-15,43;CL:0000540,1.02e-14,33;CL:0000047,1.02e-14,33;CL:0000031,1.02e-14,33;CL:0000404,1.02e-14,33;CL:0000117,1.17e-12,23;CL:0000337,1.17e-12,23;CL:0000393,3.49e-12,39;CL:0000211,3.49e-12,39;CL:0002321,8.95e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.16e-28!73;UBERON:0005743!6.16e-28!73;UBERON:0000073!3.08e-27!75;UBERON:0001016!3.08e-27!75;UBERON:0001049!4.32e-20!52;UBERON:0005068!4.32e-20!52;UBERON:0006241!4.32e-20!52;UBERON:0007135!4.32e-20!52;UBERON:0004121!5.71e-20!102;UBERON:0000924!5.71e-20!102;UBERON:0006601!5.71e-20!102;UBERON:0000955!1.01e-18!50;UBERON:0006238!1.01e-18!50;UBERON:0002346!1.10e-18!71;UBERON:0003075!1.10e-18!71;UBERON:0007284!1.10e-18!71;UBERON:0002616!3.95e-18!49;UBERON:0000033!3.83e-16!63;UBERON:0003080!5.35e-13!40;UBERON:0002020!1.38e-12!34;UBERON:0002780!1.98e-12!39;UBERON:0001890!1.98e-12!39;UBERON:0006240!1.98e-12!39;UBERON:0003056!2.82e-11!49;UBERON:0007811!6.38e-10!86;UBERON:0002791!1.18e-09!29;UBERON:0003528!1.18e-09!29;UBERON:0001893!1.18e-09!29;UBERON:0000153!1.44e-09!94;UBERON:0000468!2.92e-08!333;UBERON:0003076!3.18e-08!12;UBERON:0003057!3.18e-08!12;UBERON:0000922!1.10e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.61e-29,73;UBERON:0001016,2.47e-28,75;UBERON:0000073,2.99e-22,54;UBERON:0001049,7.02e-21,52;UBERON:0005068,7.02e-21,52;UBERON:0006241,7.02e-21,52;UBERON:0007135,7.02e-21,52;UBERON:0004121,1.81e-19,95;UBERON:0000924,1.81e-19,95;UBERON:0006601,1.81e-19,95;UBERON:0002346,7.97e-19,64;UBERON:0003075,7.97e-19,64;UBERON:0007284,7.97e-19,64;UBERON:0000955,2.04e-17,47;UBERON:0006238,2.04e-17,47;UBERON:0002616,8.20e-17,46;UBERON:0010371,2.56e-14,73;UBERON:0003080,1.74e-13,40;UBERON:0002020,4.68e-13,34;UBERON:0002780,6.84e-13,39;UBERON:0001890,6.84e-13,39;UBERON:0006240,6.84e-13,39;UBERON:0003056,1.89e-11,49;UBERON:0011216,2.40e-10,194;UBERON:0003528,5.35e-10,29;UBERON:0002791,5.35e-10,29;UBERON:0001893,5.35e-10,29;UBERON:0010314,7.35e-10,92;UBERON:0003076,1.65e-08,12;UBERON:0003057,1.65e-08,12 | |||
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| |||
|short_description=p2@Mgat3 | |||
}} |
Revision as of 15:56, 5 August 2015
Short description: | p2@Mgat3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Mgat3_5end |
Coexpression cluster: | NA |
Association with transcript: | -140bp_to_ENSMUST00000044970, NM_010795, uc007wvf.1_5end |
EntrezGene: | 17309 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.52e-15 | 44 |
neurectodermal cell | 1.52e-15 | 44 |
neural cell | 3.96e-15 | 43 |
neuron | 1.02e-14 | 33 |
neuronal stem cell | 1.02e-14 | 33 |
neuroblast | 1.02e-14 | 33 |
electrically signaling cell | 1.02e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.17e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.17e-12 | 23 |
electrically responsive cell | 3.49e-12 | 39 |
electrically active cell | 3.49e-12 | 39 |
embryonic cell | 8.95e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.61e-29 | 73 |
nervous system | 2.47e-28 | 75 |
regional part of nervous system | 2.99e-22 | 54 |
neural tube | 7.02e-21 | 52 |
neural rod | 7.02e-21 | 52 |
future spinal cord | 7.02e-21 | 52 |
neural keel | 7.02e-21 | 52 |
ectoderm-derived structure | 1.81e-19 | 95 |
ectoderm | 1.81e-19 | 95 |
presumptive ectoderm | 1.81e-19 | 95 |
neurectoderm | 7.97e-19 | 64 |
neural plate | 7.97e-19 | 64 |
presumptive neural plate | 7.97e-19 | 64 |
brain | 2.04e-17 | 47 |
future brain | 2.04e-17 | 47 |
regional part of brain | 8.20e-17 | 46 |
ecto-epithelium | 2.56e-14 | 73 |
anterior neural tube | 1.74e-13 | 40 |
gray matter | 4.68e-13 | 34 |
regional part of forebrain | 6.84e-13 | 39 |
forebrain | 6.84e-13 | 39 |
future forebrain | 6.84e-13 | 39 |
pre-chordal neural plate | 1.89e-11 | 49 |
organ system subdivision | 2.40e-10 | 194 |
brain grey matter | 5.35e-10 | 29 |
regional part of telencephalon | 5.35e-10 | 29 |
telencephalon | 5.35e-10 | 29 |
structure with developmental contribution from neural crest | 7.35e-10 | 92 |
posterior neural tube | 1.65e-08 | 12 |
chordal neural plate | 1.65e-08 | 12 |