FFCP PHASE1:Mm9::chr18:37866750..37866765,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=93714|HGNC=|UniProt=Q91XY2|association_with_transcript=-117bp_to_NM_033589,uc008eqs.1_5end|description=CAGE_peak_3_at_Pcdhga6_5end|id=chr18:37866750..37866765,+|ontology_enrichment_celltype=CL:0002319!4.80e-09!43;CL:0000221!8.69e-09!44;CL:0000133!8.69e-09!44;CL:0000117!1.48e-07!23;CL:0000337!1.48e-07!23|ontology_enrichment_celltype_v019_2=CL:0002453,4.46e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.86e-20!73;UBERON:0005743!1.86e-20!73;UBERON:0000073!3.58e-20!75;UBERON:0001016!3.58e-20!75;UBERON:0001049!6.05e-18!52;UBERON:0005068!6.05e-18!52;UBERON:0006241!6.05e-18!52;UBERON:0007135!6.05e-18!52;UBERON:0004121!7.63e-18!102;UBERON:0000924!7.63e-18!102;UBERON:0006601!7.63e-18!102;UBERON:0002346!1.52e-16!71;UBERON:0003075!1.52e-16!71;UBERON:0007284!1.52e-16!71;UBERON:0000955!1.96e-16!50;UBERON:0006238!1.96e-16!50;UBERON:0002616!8.77e-16!49;UBERON:0000033!5.64e-15!63;UBERON:0003056!3.73e-14!49;UBERON:0003080!1.19e-13!40;UBERON:0002780!3.73e-13!39;UBERON:0001890!3.73e-13!39;UBERON:0006240!3.73e-13!39;UBERON:0000025!1.38e-10!114;UBERON:0002020!3.73e-10!34;UBERON:0004111!1.42e-09!122;UBERON:0002791!4.53e-09!29;UBERON:0003528!4.53e-09!29;UBERON:0001893!4.53e-09!29;UBERON:0000153!4.63e-08!94;UBERON:0000956!2.24e-07!21;UBERON:0001869!2.24e-07!21;UBERON:0000203!2.24e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.45e-18,73;UBERON:0001016,3.45e-17,75;UBERON:0000955,1.95e-14,47;UBERON:0006238,1.95e-14,47;UBERON:0001049,4.05e-14,52;UBERON:0005068,4.05e-14,52;UBERON:0006241,4.05e-14,52;UBERON:0007135,4.05e-14,52;UBERON:0000073,2.98e-13,54;UBERON:0002616,3.61e-13,46;UBERON:0004121,4.35e-12,95;UBERON:0000924,4.35e-12,95;UBERON:0006601,4.35e-12,95;UBERON:0003080,8.80e-11,40;UBERON:0002346,1.79e-10,64;UBERON:0003075,1.79e-10,64;UBERON:0007284,1.79e-10,64;UBERON:0002780,7.94e-10,39;UBERON:0001890,7.94e-10,39;UBERON:0006240,7.94e-10,39;UBERON:0000025,1.33e-08,114;UBERON:0010371,1.52e-08,73;UBERON:0003056,4.36e-08,49;UBERON:0003528,7.89e-08,29;UBERON:0002791,7.89e-08,29;UBERON:0001893,7.89e-08,29;UBERON:0002020,1.25e-07,34;UBERON:0004111,1.33e-07,122;UBERON:0002102,3.82e-07,7;UBERON:0004710,3.82e-07,7;UBERON:0005419,3.82e-07,7;UBERON:0005417,3.82e-07,7;UBERON:0005729,3.82e-07,7|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.436050312760893,0.659058548203415,0.777719596297134,1.95980990275508,1.43752564364972,0,0,0,1.28629718017973,0,0,0.809265843438391,2.64495489636016,0.633831403506179,1.35537812827653,3.55717918444456,0,0,0,1.79760066311043,1.92109152660777,0.829516898467821,1.4850653216486,1.05162480675691,0.571301968807607,0.441737081903227,0.489963196859816,1.15014565221884,0.919218786610021,1.10115880999389,0.383062014255563,0,0.791317726381163,1.46380229763855,0.52091337055676,1.11673199600552,0.56276261003168,0.45839474333043,1.76777151284201,0.569486723196412,0.372798891650601,0.227178579999552,0.302286240427142,0,0,0,0,0,0,0,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0.742210695324124,0.346970653532272,0.304465478312141,0.922461989024234,0,0.117588707135705,0.376999773989026,0,1.01219549843938,0,0.323533699894818,0,0.484875253135222,0,1.75668478206928,1.25668024088073,0.255457055208591,0,0,0,1.04853447583376,0,1.7591609295801,0.869121600961382,0.255715457330331,1.45451631191692,1.29793010454206,0.509196819251581,0.622034853050465,0.505445516867349,0,0.390361328888111,0.459804208866946,0.720248519221397,0.150704817835715,0.680364991513279,0.896796041993948,0.562210347358373,0.517406741478031,1.07783996466421,1.32374256117473,1.05570674498369,0.657587197282725,2.50242524303038,1.39300866608867,0,0.59710280045548,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.308534225774757,0.465067889500816,0.268273401399619,0.233530684734339,0,0.492502392237286,0.56748166682099,0.438599962275997,0.658650345873152,0.402619256281115,1.89260953707715,2.05809224758569,0,0,0.639864751605702,0.232236671860439,0.38660238396628,0.201683524623343,0.444756087689741,0,0,0.164698954724011,0,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.379335801906163,0.342745537829186,0,0.610953983535943,0.775809948670503,0.280543279561274,0.632365371242573,0,0,0.246794327843601,0,0,0.196558995113203,0,0,0,0.25462585178142,0,0,0,0,0.372140947668503,0,0.505157755894224,0,0.482443521363367,1.66277871149944,0.189491411770485,0.488894929326078,0.678980343100753,0.234690248288502,0.502518772325447,0.476087281772027,1.36593553500459,2.04925687338048,1.32878813789265,1.2756381492599,0.491589944147214,0.863424909329478,0.867894351489069,0,0,0,0.275936746304732,0.481651769963376,0.820481806145422,0.163934945376675,0.757412781613119,0,0,0.215423397732799,0.477937595905104,0.668396022247182,0,0.404810701674894,0.584511715822624,0.395287777946524,1.60660658210904,0.425820255624806,0.35613120733451,0.325773918707152,0.494910368917606,0,0.971122544619926,0.302323556964751,0,0.295301892880773,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.680879211507576,0.36012218806262,0.776152102696527,0.857348140126369,0.886701168211368,1.07021290561242,0.987294123612726,1.2178597964584,0,0,0.220528398054962,0.16488625294148,0.645857706783622,0.422190474497091,0.238744688006273,0,0,1.48340241608408,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0.139951452323658,0.276399947608848,0,0.158167996790568,0.203319467126849,0,0,0.218362563746178,0,0.330613822901344,0,0.129614973291793,0,0,0.897099276263873,0.66183396182839,0.777804753376191,0.774958940866387,1.01373675294467,0.352071715937262,0,0,0,0.288030006257865,0,0.202725215290164,0.410843828659309,0,0.179026695667481,0,0.120195449519969,0.147689527174577,0,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0.386379188064381,0.563047426353546,0.36630324853453,0.643105137237198,0,1.12950368523413,0.920650473014354,1.14579102687879,1.20297227640581,0,1.5107877947794,0.675022500231806,0.45032120322422,0.453142408984205,0,0.103787347584177,0.399024873401031,0.341467211508268,0.243106717068294,0,0.183843508450014,0.44449345560323,0.206035057238894,0.64183841918363,0.252697211763798,0.50695859978048,0.377252682772152,0.37456602987953,0.640251524048693,0.114870937911227,0.476293691283074,0.347652977834566,0.38581844092741,0.412085900803307,0.294397840268795,0.342869252385415,0,0.953744759789284,0.436039249896986,0.376437521661322,0.507687647350059,0,0.263069711437843,0.814824683075171,0.561142271657738,0.118635018124174,0.197008964751127,0,0.77468420592983,0.192906610981141,0.749431733813838,0.233931608445408,0.644613162144895,0.57386499620653,0.220591419119515,0.463735671240843|short_description=p3@Pcdhga6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:93714 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q91XY2 | |||
|association_with_transcript=-117bp_to_NM_033589,uc008eqs.1_5end | |||
|cluster_id=chr18:37866750..37866765,+ | |||
|description=CAGE_peak_3_at_Pcdhga6_5end | |||
|id=chr18:37866750..37866765,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.80e-09!43;CL:0000221!8.69e-09!44;CL:0000133!8.69e-09!44;CL:0000117!1.48e-07!23;CL:0000337!1.48e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,4.46e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.86e-20!73;UBERON:0005743!1.86e-20!73;UBERON:0000073!3.58e-20!75;UBERON:0001016!3.58e-20!75;UBERON:0001049!6.05e-18!52;UBERON:0005068!6.05e-18!52;UBERON:0006241!6.05e-18!52;UBERON:0007135!6.05e-18!52;UBERON:0004121!7.63e-18!102;UBERON:0000924!7.63e-18!102;UBERON:0006601!7.63e-18!102;UBERON:0002346!1.52e-16!71;UBERON:0003075!1.52e-16!71;UBERON:0007284!1.52e-16!71;UBERON:0000955!1.96e-16!50;UBERON:0006238!1.96e-16!50;UBERON:0002616!8.77e-16!49;UBERON:0000033!5.64e-15!63;UBERON:0003056!3.73e-14!49;UBERON:0003080!1.19e-13!40;UBERON:0002780!3.73e-13!39;UBERON:0001890!3.73e-13!39;UBERON:0006240!3.73e-13!39;UBERON:0000025!1.38e-10!114;UBERON:0002020!3.73e-10!34;UBERON:0004111!1.42e-09!122;UBERON:0002791!4.53e-09!29;UBERON:0003528!4.53e-09!29;UBERON:0001893!4.53e-09!29;UBERON:0000153!4.63e-08!94;UBERON:0000956!2.24e-07!21;UBERON:0001869!2.24e-07!21;UBERON:0000203!2.24e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.45e-18,73;UBERON:0001016,3.45e-17,75;UBERON:0000955,1.95e-14,47;UBERON:0006238,1.95e-14,47;UBERON:0001049,4.05e-14,52;UBERON:0005068,4.05e-14,52;UBERON:0006241,4.05e-14,52;UBERON:0007135,4.05e-14,52;UBERON:0000073,2.98e-13,54;UBERON:0002616,3.61e-13,46;UBERON:0004121,4.35e-12,95;UBERON:0000924,4.35e-12,95;UBERON:0006601,4.35e-12,95;UBERON:0003080,8.80e-11,40;UBERON:0002346,1.79e-10,64;UBERON:0003075,1.79e-10,64;UBERON:0007284,1.79e-10,64;UBERON:0002780,7.94e-10,39;UBERON:0001890,7.94e-10,39;UBERON:0006240,7.94e-10,39;UBERON:0000025,1.33e-08,114;UBERON:0010371,1.52e-08,73;UBERON:0003056,4.36e-08,49;UBERON:0003528,7.89e-08,29;UBERON:0002791,7.89e-08,29;UBERON:0001893,7.89e-08,29;UBERON:0002020,1.25e-07,34;UBERON:0004111,1.33e-07,122;UBERON:0002102,3.82e-07,7;UBERON:0004710,3.82e-07,7;UBERON:0005419,3.82e-07,7;UBERON:0005417,3.82e-07,7;UBERON:0005729,3.82e-07,7 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.436050312760893,0.659058548203415,0.777719596297134,1.95980990275508,1.43752564364972,0,0,0,1.28629718017973,0,0,0.809265843438391,2.64495489636016,0.633831403506179,1.35537812827653,3.55717918444456,0,0,0,1.79760066311043,1.92109152660777,0.829516898467821,1.4850653216486,1.05162480675691,0.571301968807607,0.441737081903227,0.489963196859816,1.15014565221884,0.919218786610021,1.10115880999389,0.383062014255563,0,0.791317726381163,1.46380229763855,0.52091337055676,1.11673199600552,0.56276261003168,0.45839474333043,1.76777151284201,0.569486723196412,0.372798891650601,0.227178579999552,0.302286240427142,0,0,0,0,0,0,0,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0.742210695324124,0.346970653532272,0.304465478312141,0.922461989024234,0,0.117588707135705,0.376999773989026,0,1.01219549843938,0,0.323533699894818,0,0.484875253135222,0,1.75668478206928,1.25668024088073,0.255457055208591,0,0,0,1.04853447583376,0,1.7591609295801,0.869121600961382,0.255715457330331,1.45451631191692,1.29793010454206,0.509196819251581,0.622034853050465,0.505445516867349,0,0.390361328888111,0.459804208866946,0.720248519221397,0.150704817835715,0.680364991513279,0.896796041993948,0.562210347358373,0.517406741478031,1.07783996466421,1.32374256117473,1.05570674498369,0.657587197282725,2.50242524303038,1.39300866608867,0,0.59710280045548,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.308534225774757,0.465067889500816,0.268273401399619,0.233530684734339,0,0.492502392237286,0.56748166682099,0.438599962275997,0.658650345873152,0.402619256281115,1.89260953707715,2.05809224758569,0,0,0.639864751605702,0.232236671860439,0.38660238396628,0.201683524623343,0.444756087689741,0,0,0.164698954724011,0,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.379335801906163,0.342745537829186,0,0.610953983535943,0.775809948670503,0.280543279561274,0.632365371242573,0,0,0.246794327843601,0,0,0.196558995113203,0,0,0,0.25462585178142,0,0,0,0,0.372140947668503,0,0.505157755894224,0,0.482443521363367,1.66277871149944,0.189491411770485,0.488894929326078,0.678980343100753,0.234690248288502,0.502518772325447,0.476087281772027,1.36593553500459,2.04925687338048,1.32878813789265,1.2756381492599,0.491589944147214,0.863424909329478,0.867894351489069,0,0,0,0.275936746304732,0.481651769963376,0.820481806145422,0.163934945376675,0.757412781613119,0,0,0.215423397732799,0.477937595905104,0.668396022247182,0,0.404810701674894,0.584511715822624,0.395287777946524,1.60660658210904,0.425820255624806,0.35613120733451,0.325773918707152,0.494910368917606,0,0.971122544619926,0.302323556964751,0,0.295301892880773,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.680879211507576,0.36012218806262,0.776152102696527,0.857348140126369,0.886701168211368,1.07021290561242,0.987294123612726,1.2178597964584,0,0,0.220528398054962,0.16488625294148,0.645857706783622,0.422190474497091,0.238744688006273,0,0,1.48340241608408,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0.139951452323658,0.276399947608848,0,0.158167996790568,0.203319467126849,0,0,0.218362563746178,0,0.330613822901344,0,0.129614973291793,0,0,0.897099276263873,0.66183396182839,0.777804753376191,0.774958940866387,1.01373675294467,0.352071715937262,0,0,0,0.288030006257865,0,0.202725215290164,0.410843828659309,0,0.179026695667481,0,0.120195449519969,0.147689527174577,0,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0.386379188064381,0.563047426353546,0.36630324853453,0.643105137237198,0,1.12950368523413,0.920650473014354,1.14579102687879,1.20297227640581,0,1.5107877947794,0.675022500231806,0.45032120322422,0.453142408984205,0,0.103787347584177,0.399024873401031,0.341467211508268,0.243106717068294,0,0.183843508450014,0.44449345560323,0.206035057238894,0.64183841918363,0.252697211763798,0.50695859978048,0.377252682772152,0.37456602987953,0.640251524048693,0.114870937911227,0.476293691283074,0.347652977834566,0.38581844092741,0.412085900803307,0.294397840268795,0.342869252385415,0,0.953744759789284,0.436039249896986,0.376437521661322,0.507687647350059,0,0.263069711437843,0.814824683075171,0.561142271657738,0.118635018124174,0.197008964751127,0,0.77468420592983,0.192906610981141,0.749431733813838,0.233931608445408,0.644613162144895,0.57386499620653,0.220591419119515,0.463735671240843 | |||
|short_description=p3@Pcdhga6 | |||
}} |
Revision as of 18:05, 5 August 2015
Short description: | p3@Pcdhga6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Pcdhga6_5end |
Coexpression cluster: | NA |
Association with transcript: | -117bp_to_NM_033589, uc008eqs.1_5end |
EntrezGene: | 93714 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 4.46e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.45e-18 | 73 |
nervous system | 3.45e-17 | 75 |
brain | 1.95e-14 | 47 |
future brain | 1.95e-14 | 47 |
neural tube | 4.05e-14 | 52 |
neural rod | 4.05e-14 | 52 |
future spinal cord | 4.05e-14 | 52 |
neural keel | 4.05e-14 | 52 |
regional part of nervous system | 2.98e-13 | 54 |
regional part of brain | 3.61e-13 | 46 |
ectoderm-derived structure | 4.35e-12 | 95 |
ectoderm | 4.35e-12 | 95 |
presumptive ectoderm | 4.35e-12 | 95 |
anterior neural tube | 8.80e-11 | 40 |
neurectoderm | 1.79e-10 | 64 |
neural plate | 1.79e-10 | 64 |
presumptive neural plate | 1.79e-10 | 64 |
regional part of forebrain | 7.94e-10 | 39 |
forebrain | 7.94e-10 | 39 |
future forebrain | 7.94e-10 | 39 |
tube | 1.33e-08 | 114 |
ecto-epithelium | 1.52e-08 | 73 |
pre-chordal neural plate | 4.36e-08 | 49 |
brain grey matter | 7.89e-08 | 29 |
regional part of telencephalon | 7.89e-08 | 29 |
telencephalon | 7.89e-08 | 29 |
gray matter | 1.25e-07 | 34 |
anatomical conduit | 1.33e-07 | 122 |
forelimb | 3.82e-07 | 7 |
pectoral appendage | 3.82e-07 | 7 |
pectoral appendage bud | 3.82e-07 | 7 |
forelimb bud | 3.82e-07 | 7 |
forelimb/pectoral fin field | 3.82e-07 | 7 |