FFCP PHASE2:Hg19::chr1:70033033..70033074,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:57554 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding |HGNC=HGNC:18531 |TSSclassifier=st...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=57554 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | ||
|HGNC= | |HGNC=18531 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q96NW7 | ||
|association_with_transcript=165bp_to_uc001deo.1_5end | |association_with_transcript=165bp_to_uc001deo.1_5end | ||
|cluster_id=chr1:70033033..70033074,+ | |cluster_id=chr1:70033033..70033074,+ | ||
Latest revision as of 03:28, 19 September 2015
| Short description: | p5@LRRC7 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_LRRC7_5end |
| Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
| Association with transcript: | 165bp_to_uc001deo.1_5end |
| EntrezGene: | LRRC7 |
| HGNC: | 18531 |
| UniProt: | Q96NW7 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@LRRC7 |
|---|
0
10
20
30
40
50
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| telencephalon | 9.67e-90 | 34 |
| regional part of forebrain | 1.21e-88 | 41 |
| forebrain | 1.21e-88 | 41 |
| anterior neural tube | 1.21e-88 | 41 |
| future forebrain | 1.21e-88 | 41 |
| cerebral hemisphere | 1.84e-84 | 32 |
| regional part of telencephalon | 3.46e-84 | 32 |
| brain grey matter | 4.20e-84 | 34 |
| gray matter | 4.20e-84 | 34 |
| neural tube | 3.37e-78 | 56 |
Showing 1 to 10 of 71 entries
