FFCP PHASE2:Mm9::chr13:59658591..59658707,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=NA |DPIdataset=NA |EntrezGene=entrezgene:67269 |HGNC= |MCL_coexpression_id=60 |TSSclassifier=NA |UniProt=uniprot:Q641K1,uniprot:E9PX07,uniprot:E9PXA7,unipro...") |
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=67269 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |MCL_coexpression_id=60 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=Q641K1,E9PX07,E9PXA7,E9Q352,E9Q3T5,Q8C1R2,E9PYF9 | ||
|association_with_transcript=0bp_to_ENSMUST00000022040,ENSMUST00000091573,ENSMUST00000109830,ENSMUST00000165370,ENSMUST00000165477,ENSMUST00000165598,ENSMUST00000166369,ENSMUST00000166585,ENSMUST00000167096,ENSMUST00000167593,ENSMUST00000170555,ENSMUST00000171606,NM_001048008,NM_023328,uc007qun.1,uc007qup.1,uc007quq.1,uc007qur.1,uc007qus.1,uc011zar.1_5end | |association_with_transcript=0bp_to_ENSMUST00000022040,ENSMUST00000091573,ENSMUST00000109830,ENSMUST00000165370,ENSMUST00000165477,ENSMUST00000165598,ENSMUST00000166369,ENSMUST00000166585,ENSMUST00000167096,ENSMUST00000167593,ENSMUST00000170555,ENSMUST00000171606,NM_001048008,NM_023328,uc007qun.1,uc007qup.1,uc007quq.1,uc007qur.1,uc007qus.1,uc011zar.1_5end | ||
|cluster_id=chr13:59658591..59658707,- | |cluster_id=chr13:59658591..59658707,- | ||
Latest revision as of 20:07, 1 October 2015
| Short description: | p1@Agtpbp1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Agtpbp1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:60 |
| Association with transcript: | 0bp_to_ENSMUST00000022040, ENSMUST00000091573, ENSMUST00000109830, ENSMUST00000165370, ENSMUST00000165477, ENSMUST00000165598, ENSMUST00000166369, ENSMUST00000166585, ENSMUST00000167096, ENSMUST00000167593, ENSMUST00000170555, ENSMUST00000171606, NM_001048008, NM_023328, uc007qun.1, uc007qup.1, uc007quq.1, uc007qur.1, uc007qus.1, uc011zar.1_5end |
| EntrezGene: | Agtpbp1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 2.72e-11 | 33 |
| neuronal stem cell | 2.72e-11 | 33 |
| neuroblast | 2.72e-11 | 33 |
| electrically signaling cell | 2.72e-11 | 33 |
| CNS neuron (sensu Vertebrata) | 3.66e-10 | 23 |
| neuroblast (sensu Vertebrata) | 3.66e-10 | 23 |
| electrically responsive cell | 2.33e-09 | 39 |
| electrically active cell | 2.33e-09 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 2.62e-16 | 73 |
| nervous system | 3.77e-16 | 75 |
| regional part of nervous system | 9.45e-16 | 54 |
| neurectoderm | 1.17e-15 | 64 |
| neural plate | 1.17e-15 | 64 |
| presumptive neural plate | 1.17e-15 | 64 |
| ectoderm-derived structure | 8.89e-15 | 95 |
| ectoderm | 8.89e-15 | 95 |
| presumptive ectoderm | 8.89e-15 | 95 |
| neural tube | 1.31e-14 | 52 |
| neural rod | 1.31e-14 | 52 |
| future spinal cord | 1.31e-14 | 52 |
| neural keel | 1.31e-14 | 52 |
| gray matter | 4.53e-14 | 34 |
| ecto-epithelium | 1.85e-13 | 73 |
| brain | 2.88e-12 | 47 |
| future brain | 2.88e-12 | 47 |
| regional part of brain | 9.23e-12 | 46 |
| brain grey matter | 1.04e-11 | 29 |
| regional part of telencephalon | 1.04e-11 | 29 |
| telencephalon | 1.04e-11 | 29 |
| structure with developmental contribution from neural crest | 1.26e-11 | 92 |
| pre-chordal neural plate | 2.70e-11 | 49 |
| anterior neural tube | 3.56e-11 | 40 |
| regional part of forebrain | 1.03e-10 | 39 |
| forebrain | 1.03e-10 | 39 |
| future forebrain | 1.03e-10 | 39 |
| cerebral cortex | 5.11e-08 | 21 |
| cerebral hemisphere | 5.11e-08 | 21 |
| pallium | 5.11e-08 | 21 |
| occipital lobe | 8.35e-08 | 10 |
| visual cortex | 8.35e-08 | 10 |
| neocortex | 8.35e-08 | 10 |
| regional part of cerebral cortex | 9.11e-07 | 17 |
