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Coexpression cluster:C96

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Full id: C96_non_acute_tonsil_spleen_Burkitt_lymphoma_appendix



Phase1 CAGE Peaks

Hg19::chr10:124907798..124907817,+p3@HMX2
Hg19::chr10:131662553..131662562,-p@chr10:131662553..131662562
-
Hg19::chr10:22657453..22657473,+p@chr10:22657453..22657473
+
Hg19::chr10:22657489..22657502,+p@chr10:22657489..22657502
+
Hg19::chr10:22657523..22657534,+p@chr10:22657523..22657534
+
Hg19::chr10:92222972..92222975,+p3@ENST00000425365
Hg19::chr10:92223019..92223025,+p@chr10:92223019..92223025
+
Hg19::chr10:92223039..92223049,+p@chr10:92223039..92223049
+
Hg19::chr10:92617497..92617515,-p3@HTR7
Hg19::chr10:92618341..92618354,-p@chr10:92618341..92618354
-
Hg19::chr10:98031310..98031338,-p2@BLNK
Hg19::chr10:98031518..98031523,-p7@BLNK
Hg19::chr10:98032551..98032586,-p@chr10:98032551..98032586
-
Hg19::chr10:98055500..98055510,+p@chr10:98055500..98055510
+
Hg19::chr10:98055551..98055556,+p@chr10:98055551..98055556
+
Hg19::chr10:98066401..98066431,-p@chr10:98066401..98066431
-
Hg19::chr10:98066448..98066453,-p@chr10:98066448..98066453
-
Hg19::chr10:98066533..98066541,-p@chr10:98066533..98066541
-
Hg19::chr11:43600370..43600415,+p10@HSD17B12
Hg19::chr11:43600753..43600760,+p14@HSD17B12
Hg19::chr11:43600779..43600793,+p12@HSD17B12
Hg19::chr11:43600804..43600812,+p13@HSD17B12
Hg19::chr12:133413316..133413325,-p@chr12:133413316..133413325
-
Hg19::chr12:13530059..13530066,-p5@C12orf36
Hg19::chr12:25150390..25150403,-p1@C12orf77
Hg19::chr12:25150409..25150430,-p2@C12orf77
Hg19::chr12:25150496..25150515,+p@chr12:25150496..25150515
+
Hg19::chr12:25173780..25173790,+p14@LRMP
Hg19::chr12:25204585..25204605,-p@chr12:25204585..25204605
-
Hg19::chr12:25204728..25204738,+p16@LRMP
Hg19::chr12:25204810..25204820,+p17@LRMP
Hg19::chr12:25205446..25205566,+p1@LRMP
Hg19::chr12:25205568..25205585,+p5@LRMP
Hg19::chr12:25205852..25205862,+p6@LRMP
Hg19::chr12:25210728..25210735,+p@chr12:25210728..25210735
+
Hg19::chr12:25210754..25210771,+p@chr12:25210754..25210771
+
Hg19::chr12:25215762..25215789,+p@chr12:25215762..25215789
+
Hg19::chr12:25255743..25255749,+p@chr12:25255743..25255749
+
Hg19::chr12:25263137..25263139,+p@chr12:25263137..25263139
+
Hg19::chr12:4551112..4551125,+p@chr12:4551112..4551125
+
Hg19::chr12:69140414..69140468,+p5@SLC35E3
Hg19::chr12:69198683..69198711,+p@chr12:69198683..69198711
+
Hg19::chr12:69198714..69198725,+p@chr12:69198714..69198725
+
Hg19::chr12:69202975..69203013,+p4@MDM2
Hg19::chr12:71182681..71182693,-p18@PTPRR
Hg19::chr12:71182695..71182705,-p23@PTPRR
Hg19::chr12:8850300..8850313,+p10@RIMKLB
Hg19::chr13:110781540..110781545,+p@chr13:110781540..110781545
+
Hg19::chr13:110781552..110781565,+p@chr13:110781552..110781565
+
Hg19::chr13:110781641..110781649,+p@chr13:110781641..110781649
+
Hg19::chr13:110782380..110782393,-p@chr13:110782380..110782393
-
Hg19::chr13:114057117..114057141,-p@chr13:114057117..114057141
-
Hg19::chr13:28674672..28674681,-p3@FLT3
Hg19::chr14:105603512..105603518,+p@chr14:105603512..105603518
+
Hg19::chr14:106383602..106383642,-p2@AK092847
Hg19::chr14:106383698..106383706,-p6@AK092847
Hg19::chr14:106383711..106383718,-p8@AK092847
Hg19::chr14:106383822..106383848,-p4@AK092847
Hg19::chr14:106384075..106384080,-p10@AK092847
Hg19::chr14:106384095..106384105,-p3@AK092847
Hg19::chr14:106384123..106384135,-p1@AK092847
Hg19::chr14:106384139..106384141,-p7@AK092847
Hg19::chr14:106384142..106384151,-p5@AK092847
Hg19::chr14:106405758..106405764,-p1@AF460793
Hg19::chr14:106405787..106405796,-p1@DQ454919
p1@DQ523938
p1@FN563493
p1@FN563497
p1@FN563498
p1@FN563499
p1@FN563500
p1@FN563501
p1@FN563502
p1@FN563503
p1@FN563504
p1@FN563505
p1@FN563506
p1@FN563508
p1@FN563510
p1@FN563511
p1@FN563512
p1@FN563513
p1@FN563514
p1@FN563515
p1@FN563516
p1@FN563517
p1@FN563518
p1@FN563519
p1@FN563521
p1@FN563522
p1@FN563523
p1@FN563524
p1@FN563525
p1@FN563526
p1@FN563527
p1@FN563532
p1@FN563533
p1@FN563534
p1@FN563535
p1@FN563536
p1@FN563537
p1@FN563539
p1@FN563541
p1@FN563542
p1@FN563543
p1@FN563544
p1@FN563545
p1@FN563546
p1@FN563547
p1@FN563548
p1@FN563549
p1@FN563550
p1@FN563551
p1@FN563552
p1@FN563553
p1@FN563554
p1@FN563555
p1@FN563556
p1@FN563557
p1@FN563558
p1@FN563559
p1@FN563560
p1@FN563561
p1@FN563562
p1@FN563563
p1@FN563564
p1@FN563565
p1@FN563566
p1@FN563568
p1@FN563569
p1@FN563570
p1@FN563593
p1@FN563594
p1@FN563595
p1@FN563596
p1@FN563598
p1@FN563601
p1@FN563604
p1@FN563605
p1@FN563606
p1@FN563607
p1@FN563608
p1@FN563610
p1@FN563612
p1@FN563638
p1@FN563639
p1@FN563640
p1@FN563641
p1@FN563642
p1@FN563643
p1@FN563644
p1@FN563645
p1@FN563646
p1@FN563647
p1@FN563648
p1@FN563649
p1@FN563650
p1@FN563651
p1@FN563652
p1@FN563653
p1@FN563654
p1@FN563655
p1@FN563656
p1@FN563657
p1@FN563658
p1@FN563659
p1@FN563660
p1@FN563661
p1@FN563662
p1@FN563663
p1@FN563664
p1@FN563665
p1@FN563666
p1@FN563667
p1@FN563674
p1@FN563675
p1@FN563676
p1@FN563677
p1@FN563678
p1@FN563679
p1@FN563680
p1@FN563681
p1@FN563682
p1@FN563683
p1@FN563684
p1@FN563685
p1@FN563686
p1@FN563687
p1@FN563688
p1@FN563689
p1@FN563690
p1@FN563691
p1@FN563692
p1@FN563693
p1@FN563694
p1@FN563695
p1@FN563696
p1@FN563697
p1@FN563698
p1@FN563712
p1@FN563713
p1@FN563714
p1@FN563715
p1@FN563716
p1@FN563717
p1@FN563727
p1@FN563728
p1@FN563729
p1@FN563730
p1@FN563731
p1@FN563732
p1@FN563741
p1@FN563742
p1@FN563743
p1@FN563744
p1@FN563745
p1@FN563746
p1@FN563747
p1@FN563748
p1@FN563749
p1@FN563750
p1@FN563751
p1@FN563752
Hg19::chr14:106405933..106405941,-p1@M18510
Hg19::chr14:106405948..106405951,-p4@M18510
Hg19::chr14:106405971..106405977,-p3@M18510
Hg19::chr14:106405982..106405989,-p2@M18510
Hg19::chr14:106406000..106406010,-p1@Z14210
Hg19::chr14:106406070..106406081,-p2@IGHV6-1
Hg19::chr14:106406090..106406115,-p1@IGHV6-1
Hg19::chr14:106406696..106406703,-p@chr14:106406696..106406703
-
Hg19::chr14:106406720..106406724,-p@chr14:106406720..106406724
-
Hg19::chr14:35761422..35761427,+p14@PSMA6
Hg19::chr14:96343005..96343014,+p5@LOC100507043
Hg19::chr14:96343026..96343041,+p3@LOC100507043
Hg19::chr16:13637800..13637841,-p@chr16:13637800..13637841
-
Hg19::chr16:17563573..17563582,+p@chr16:17563573..17563582
+
Hg19::chr16:46737348..46737351,-p@chr16:46737348..46737351
-
Hg19::chr16:46766184..46766193,-p@chr16:46766184..46766193
-
Hg19::chr16:46766194..46766234,-p@chr16:46766194..46766234
-
Hg19::chr16:46766268..46766269,-p@chr16:46766268..46766269
-
Hg19::chr16:46766272..46766280,-p@chr16:46766272..46766280
-
Hg19::chr16:46766384..46766395,-p@chr16:46766384..46766395
-
Hg19::chr16:46766402..46766412,-p@chr16:46766402..46766412
-
Hg19::chr16:46791617..46791651,-p@chr16:46791617..46791651
-
Hg19::chr16:46791823..46791846,+p@chr16:46791823..46791846
+
Hg19::chr17:55521967..55522016,+p@chr17:55521967..55522016
+
Hg19::chr17:79426794..79426806,-p@chr17:79426794..79426806
-
Hg19::chr18:21269377..21269400,+p5@LAMA3
Hg19::chr18:21269404..21269427,+p3@LAMA3
Hg19::chr18:21269438..21269450,+p6@LAMA3
Hg19::chr18:21269455..21269466,+p8@LAMA3
Hg19::chr18:21331006..21331023,+p@chr18:21331006..21331023
+
Hg19::chr1:108087757..108087764,-p@chr1:108087757..108087764
-
Hg19::chr1:160417026..160417050,+p@chr1:160417026..160417050
+
Hg19::chr1:160417052..160417079,+p@chr1:160417052..160417079
+
Hg19::chr1:160454063..160454067,+p@chr1:160454063..160454067
+
Hg19::chr1:160616775..160616791,+p@chr1:160616775..160616791
+
Hg19::chr1:160616793..160616809,+p@chr1:160616793..160616809
+
Hg19::chr1:194554312..194554335,-p@chr1:194554312..194554335
-
Hg19::chr1:194586302..194586306,-p@chr1:194586302..194586306
-
Hg19::chr1:198990180..198990193,-p2@ENST00000427439
p2@uc001gva.3
Hg19::chr1:206809336..206809348,+p9@DYRK3
Hg19::chr1:206832654..206832657,+p@chr1:206832654..206832657
+
Hg19::chr1:206832682..206832715,+p@chr1:206832682..206832715
+
Hg19::chr1:37889483..37889496,-p@chr1:37889483..37889496
-
Hg19::chr20:43859501..43859510,+p2@ENST00000461248
Hg19::chr20:47078789..47078823,-p@chr20:47078789..47078823
-
Hg19::chr20:47129727..47129763,-p@chr20:47129727..47129763
-
Hg19::chr20:47132943..47132968,-p@chr20:47132943..47132968
-
Hg19::chr20:52198507..52198528,-p@chr20:52198507..52198528
-
Hg19::chr20:52198595..52198625,-p@chr20:52198595..52198625
-
Hg19::chr20:61805397..61805404,-p@chr20:61805397..61805404
-
Hg19::chr21:36308851..36308860,+p@chr21:36308851..36308860
+
Hg19::chr21:39115284..39115298,+p@chr21:39115284..39115298
+
Hg19::chr21:39115390..39115395,+p@chr21:39115390..39115395
+
Hg19::chr21:39115403..39115413,+p@chr21:39115403..39115413
+
Hg19::chr21:39870648..39870655,-p8@ERG
Hg19::chr21:46437998..46438013,+p@chr21:46437998..46438013
+
Hg19::chr22:23230081..23230110,+p2@IGLL5
Hg19::chr22:23922319..23922326,-p7@IGLL1
Hg19::chr22:23922379..23922390,-p5@IGLL1
Hg19::chr22:23922395..23922409,-p4@IGLL1
Hg19::chr22:23922410..23922446,-p2@IGLL1
Hg19::chr22:23925460..23925479,-p@chr22:23925460..23925479
-
Hg19::chr22:26875345..26875357,-p8@HPS4
Hg19::chr22:26875366..26875397,-p4@HPS4
Hg19::chr22:26875412..26875432,-p9@HPS4
Hg19::chr22:26875443..26875461,-p6@HPS4
Hg19::chr22:26875507..26875520,-p10@HPS4
Hg19::chr22:26877747..26877769,-p11@HPS4
Hg19::chr22:26877821..26877834,-p13@HPS4
Hg19::chr22:26877850..26877861,-p20@HPS4
Hg19::chr22:26877862..26877873,-p17@HPS4
Hg19::chr22:36177984..36177995,-p@chr22:36177984..36177995
-
Hg19::chr2:209185736..209185748,+p@chr2:209185736..209185748
+
Hg19::chr2:209185749..209185758,+p@chr2:209185749..209185758
+
Hg19::chr2:232550380..232550391,+p@chr2:232550380..232550391
+
Hg19::chr2:232550405..232550412,+p@chr2:232550405..232550412
+
Hg19::chr3:18264257..18264263,-p@chr3:18264257..18264263
-
Hg19::chr3:64601252..64601265,-p@chr3:64601252..64601265
-
Hg19::chr3:65607732..65607744,-p@chr3:65607732..65607744
-
Hg19::chr3:65607748..65607757,-p@chr3:65607748..65607757
-
Hg19::chr3:65607785..65607791,-p33@MAGI1
Hg19::chr3:65607830..65607840,-p37@MAGI1
Hg19::chr4:48198666..48198677,-p@chr4:48198666..48198677
-
Hg19::chr4:48198707..48198715,-p@chr4:48198707..48198715
-
Hg19::chr4:6940617..6940656,+p@chr4:6940617..6940656
+
Hg19::chr4:871312..871315,-p@chr4:871312..871315
-
Hg19::chr5:124082525..124082536,-p10@ZNF608
Hg19::chr5:124082548..124082571,-p9@ZNF608
Hg19::chr5:124082580..124082603,-p4@ZNF608
Hg19::chr5:133331230..133331248,-p@chr5:133331230..133331248
-
Hg19::chr5:133331251..133331267,-p@chr5:133331251..133331267
-
Hg19::chr5:133331289..133331300,-p@chr5:133331289..133331300
-
Hg19::chr5:133331641..133331646,-p@chr5:133331641..133331646
-
Hg19::chr5:133331671..133331679,-p@chr5:133331671..133331679
-
Hg19::chr5:133331849..133331851,-p@chr5:133331849..133331851
-
Hg19::chr5:133332213..133332243,-p@chr5:133332213..133332243
-
Hg19::chr5:142985129..142985161,+p2@ENST00000503323
Hg19::chr5:142985169..142985178,+p4@ENST00000503323
Hg19::chr5:143074209..143074239,+p@chr5:143074209..143074239
+
Hg19::chr5:157603408..157603413,-p2@ENST00000522769
Hg19::chr5:157603447..157603458,-p1@ENST00000522769
Hg19::chr5:157622990..157622997,+p@chr5:157622990..157622997
+
Hg19::chr5:157623007..157623028,+p@chr5:157623007..157623028
+
Hg19::chr5:157623030..157623038,+p@chr5:157623030..157623038
+
Hg19::chr5:157702714..157702726,+p1@ENST00000523820
Hg19::chr5:157702811..157702861,+p2@ENST00000523820
Hg19::chr5:158523357..158523390,-p9@EBF1
Hg19::chr5:158524563..158524578,-p11@EBF1
Hg19::chr5:158524625..158524669,-p6@EBF1
Hg19::chr5:192055..192064,+p10@LRRC14B
Hg19::chr5:192067..192074,+p13@LRRC14B
Hg19::chr5:192075..192088,+p3@LRRC14B
Hg19::chr5:192089..192098,+p11@LRRC14B
Hg19::chr6:10411448..10411451,+p@chr6:10411448..10411451
+
Hg19::chr6:10411457..10411474,+p@chr6:10411457..10411474
+
Hg19::chr6:10411476..10411480,+p@chr6:10411476..10411480
+
Hg19::chr6:19838300..19838315,+p4@ID4
Hg19::chr6:27440578..27440596,-p8@ZNF184
Hg19::chr6:814669..814688,+p@chr6:814669..814688
+
Hg19::chr6:814689..814696,+p@chr6:814689..814696
+
Hg19::chr6:814776..814791,+p@chr6:814776..814791
+
Hg19::chr6:814797..814809,+p@chr6:814797..814809
+
Hg19::chr6:857130..857138,+p@chr6:857130..857138
+
Hg19::chr8:130566236..130566259,-p@chr8:130566236..130566259
-
Hg19::chr9:37144866..37144875,+p13@ZCCHC7
Hg19::chr9:37144897..37144917,+p5@ZCCHC7
Hg19::chr9:37144933..37144950,+p7@ZCCHC7
Hg19::chr9:37144953..37144960,+p11@ZCCHC7
Hg19::chrX:13752304..13752310,-p@chrX:13752304..13752310
-
Hg19::chrX:72949174..72949184,+p@chrX:72949174..72949184
+
Hg19::chrX:72949240..72949272,+p@chrX:72949240..72949272
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007516hemocyte development0.00197934237787974
GO:0042386hemocyte differentiation0.00197934237787974
GO:0032501multicellular organismal process0.00520319331889394
GO:0007275multicellular organismal development0.00520319331889394
GO:0032502developmental process0.00888402511410301
GO:0030097hemopoiesis0.00888402511410301
GO:0048534hemopoietic or lymphoid organ development0.00941251521246637
GO:0002520immune system development0.0095615194149862
GO:0050793regulation of developmental process0.0176344319756542
GO:0048075positive regulation of eye pigmentation0.0176344319756542
GO:0048073regulation of eye pigmentation0.0176344319756542
GO:0048087positive regulation of pigmentation0.0176344319756542
GO:0048712negative regulation of astrocyte differentiation0.0176344319756542
GO:0008283cell proliferation0.0286470947735556
GO:0017163negative regulator of basal transcription activity0.0286470947735556
GO:0048070regulation of pigmentation during development0.0286470947735556
GO:0002376immune system process0.0327294183578825
GO:0014014negative regulation of gliogenesis0.0327294183578825
GO:0045686negative regulation of glial cell differentiation0.0327294183578825
GO:0042827platelet dense granule0.0327294183578825
GO:0048710regulation of astrocyte differentiation0.0327294183578825
GO:0006906vesicle fusion0.0416427502949157
GO:0048731system development0.0450969045074524
GO:0005068transmembrane receptor protein tyrosine kinase adaptor protein activity0.0450969045074524
GO:0048069eye pigmentation0.0450969045074524
GO:0042127regulation of cell proliferation0.0450969045074524



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
MEF2C#4208132.740038818388330.00107857570305480.00761426036577937



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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