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MCL coexpression mm9:3134

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Phase1 CAGE Peaks

 Short description
Mm9::chr18:35278534..35278557,+p2@Ctnna1
Mm9::chr18:35278561..35278580,+p1@Ctnna1
Mm9::chr18:35278596..35278607,+p3@Ctnna1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine6.74e-1331
gastrointestinal system6.66e-1247
cardiovascular system2.06e-1023
circulatory system2.06e-1023
primary circulatory organ2.72e-0918
heart2.72e-0918
primitive heart tube2.72e-0918
primary heart field2.72e-0918
anterior lateral plate mesoderm2.72e-0918
heart tube2.72e-0918
heart primordium2.72e-0918
cardiac mesoderm2.72e-0918
cardiogenic plate2.72e-0918
heart rudiment2.72e-0918
compound organ1.42e-0843
thoracic cavity element1.47e-0817
thoracic segment organ1.47e-0817
thoracic cavity1.47e-0817
thoracic segment of trunk1.47e-0817
respiratory primordium1.47e-0817
endoderm of foregut1.47e-0817
mucosa6.37e-0815
endoderm-derived structure1.16e-07118
endoderm1.16e-07118
presumptive endoderm1.16e-07118
splanchnic layer of lateral plate mesoderm1.53e-0733
digestive system4.71e-07116
digestive tract4.71e-07116
primitive gut4.71e-07116
lung7.85e-0714
respiratory tube7.85e-0714
respiration organ7.85e-0714
pair of lungs7.85e-0714
lung primordium7.85e-0714
lung bud7.85e-0714
intestinal mucosa8.62e-0713
anatomical wall8.62e-0713
wall of intestine8.62e-0713
gastrointestinal system mucosa8.62e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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