UBERON:0001017
From FANTOM5_SSTAR
Name: | central nervous system | |
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Definition: | "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator] | |
Xrefs: |
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Synonyms: |
"cerebrospinal axis" EXACT [FMA:55675] "CNS" EXACT [] "neuraxis" EXACT [FMA:55675] "systema nervosum centrale" EXACT [FMA:55675, FMA:TA] | |
Comments: | ZFA retina NOT part_of CNS. XAO excludes retina in text def, retina part_of CNS. MA retina NOT part_of CNS. NIF_GA retina NOT part_of CNS. Fly also excludes it. EFO also excludes it. GO also excludes it. | |
Alt_id: | UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000073(regional part of nervous system) |
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part_of: | UBERON:0001016(nervous system),UBERON:0005743() |
Children
part of: | CL:0000047 (neuronal stem cell),CL:0000117 (CNS neuron (sensu Vertebrata)),FF:0000121 (central nervous system neuron),UBERON:0000125 (neural nucleus),CL:0000127 (astrocyte),CL:0000128 (oligodendrocyte),CL:0000129 (microglial cell),CL:0000878 (central nervous system macrophage),UBERON:0000955 (brain),UBERON:0001018 (axon tract),UBERON:0002020 (gray matter),UBERON:0002240 (spinal cord),UBERON:0002316 (white matter),CL:0002453 (oligodendrocyte precursor cell),CL:0002575 (central nervous system pericyte),UBERON:0005281 (ventricular system of central nervous system),UBERON:0006241 (future spinal cord),UBERON:0010743 (meningeal cluster),UBERON:0011215 (central nervous system cell part cluster),CL:2000029 (central nervous system neuron) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10012-101C3 (brain, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
... further results Mouse (Mus musculus)
- 10012-101C3 (brain, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001017 (central nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data