Personal tools

UBERON:0001017

From FANTOM5_SSTAR

Revision as of 13:27, 27 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:central nervous system
Definition:"The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator]
Xrefs:
links:

AAO:0000090
BILA:0000080
BTO:0000227
EFO:0000908
EHDAA2:0000225
EHDAA:828
EMAPA:16470
EMAPA:16754
EV:0100163
FBbt:00005094
FMA:55675
GAID:570
MA:0000167
MAT:0000457
MESH:A.08.186
ncithesaurus:Central_Nervous_System
NIF_GrossAnatomy:birnlex_1099
OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA
SCTID:278199004
TAO:0000012
VHOG:0000293
XAO:0000215

ZFA:0000012
Synonyms: "cerebrospinal axis" EXACT [FMA:55675]
"CNS" EXACT []
"neuraxis" EXACT [FMA:55675]
"systema nervosum centrale" EXACT [FMA:55675, FMA:TA]
Alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0011216(organ system subdivision)
part_of:UBERON:0001016(nervous system)



Children

part of:CL:0000047 (neuronal stem cell),CL:0000117 (CNS neuron (sensu Vertebrata)),FF:0000121 (central nervous system neuron),UBERON:0000125 (neural nucleus),CL:0000127 (astrocyte),CL:0000128 (oligodendrocyte),CL:0000129 (microglial cell),CL:0000878 (central nervous system macrophage),UBERON:0000955 (brain),UBERON:0001018 (axon tract),UBERON:0002020 (gray matter),UBERON:0002240 (spinal cord),UBERON:0002316 (white matter),CL:0002453 (oligodendrocyte precursor cell),CL:0002575 (central nervous system pericyte),UBERON:0005281 (ventricular system of central nervous system),UBERON:0006241 (future spinal cord),UBERON:0010743 (meningeal cluster),UBERON:0011215 (central nervous system cell part cluster),CL:2000029 (central nervous system neuron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001017 (central nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the nervous system which includes the brain and spinal cord.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The brain and spinal cord. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.