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MCL coexpression mm9:63

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:126566637..126566659,+p@chr10:126566637..126566659
+
Mm9::chr10:126566696..126566708,+p@chr10:126566696..126566708
+
Mm9::chr10:24365193..24365206,-p@chr10:24365193..24365206
-
Mm9::chr10:73284925..73284941,+p8@Pcdh15
Mm9::chr10:73409774..73409819,+p@chr10:73409774..73409819
+
Mm9::chr10:77555495..77555503,-p@chr10:77555495..77555503
-
Mm9::chr10:95729265..95729274,+p@chr10:95729265..95729274
+
Mm9::chr11:106597762..106597780,-p@chr11:106597762..106597780
-
Mm9::chr11:29274363..29274366,+p@chr11:29274363..29274366
+
Mm9::chr11:46553329..46553342,+p3@Havcr1
Mm9::chr11:46624294..46624311,+p1@Timd4
Mm9::chr11:5405967..5405985,+p@chr11:5405967..5405985
+
Mm9::chr11:69980268..69980286,+p4@Clec10a
Mm9::chr11:70277390..70277431,+p@chr11:70277390..70277431
+
Mm9::chr11:81915338..81915351,+p1@Ccl12
p1@LOC100504977
Mm9::chr12:104978425..104978430,-p@chr12:104978425..104978430
-
Mm9::chr12:114526957..114526973,-p@chr12:114526957..114526973
-
Mm9::chr12:114546123..114546134,-p@chr12:114546123..114546134
-
Mm9::chr12:114567506..114567507,-p@chr12:114567506..114567507
-
Mm9::chr12:114567677..114567686,-p@chr12:114567677..114567686
-
Mm9::chr12:114567912..114567927,-p@chr12:114567912..114567927
-
Mm9::chr12:114568638..114568651,-p@chr12:114568638..114568651
-
Mm9::chr12:114568713..114568725,-p@chr12:114568713..114568725
-
Mm9::chr12:114568729..114568734,-p@chr12:114568729..114568734
-
Mm9::chr12:114660597..114660625,-p@chr12:114660597..114660625
-
Mm9::chr12:114666745..114666758,-p3@ENSMUST00000103427
Mm9::chr12:114667453..114667463,-p4@uc007pgf.1
p4@uc007pgl.1
Mm9::chr12:114667519..114667559,-p3@uc007pgf.1
p3@uc007pgl.1
Mm9::chr12:114900504..114900520,-p1@ENSMUST00000103448
Mm9::chr12:115077240..115077256,-p1@ENSMUST00000103458
Mm9::chr12:115170635..115170643,-p1@ENSMUST00000103463
Mm9::chr12:115233151..115233160,-p1@ENSMUST00000103467
Mm9::chr12:115347671..115347704,-p1@ENSMUST00000103472
Mm9::chr12:115379333..115379344,-p1@ENSMUST00000103473
Mm9::chr12:115415120..115415129,-p1@ENSMUST00000103475
Mm9::chr12:115501349..115501356,-p1@ENSMUST00000103479
Mm9::chr12:115526837..115526854,-p1@ENSMUST00000103481
Mm9::chr12:115630442..115630458,-p1@ENSMUST00000103486
Mm9::chr12:115762154..115762170,-p1@ENSMUST00000103495
Mm9::chr12:115803256..115803267,-p1@ENSMUST00000103497
Mm9::chr12:115850904..115850940,-p@chr12:115850904..115850940
-
Mm9::chr12:115921323..115921329,-p1@ENSMUST00000103504
Mm9::chr12:115947341..115947346,-p1@ENSMUST00000103505
Mm9::chr12:115984965..115984972,-p1@ENSMUST00000103507
Mm9::chr12:116027064..116027072,-p1@LOC100505002
Mm9::chr12:116073906..116073921,-p@chr12:116073906..116073921
-
Mm9::chr12:116089882..116089889,-p1@LOC100505009
Mm9::chr12:116153291..116153297,-p1@ENSMUST00000103515
Mm9::chr12:116175803..116175809,-p1@ENSMUST00000103516
Mm9::chr12:116229787..116229793,-p1@ENSMUST00000103518
Mm9::chr12:116432354..116432380,-p1@ENSMUST00000103525
Mm9::chr12:116550859..116550866,-p1@ENSMUST00000103529
Mm9::chr12:116685088..116685116,-p1@ENSMUST00000163467
Mm9::chr12:117100525..117100564,-p1@ENSMUST00000170551
Mm9::chr12:117107437..117107465,-p1@ENSMUST00000163670
Mm9::chr12:117151003..117151008,-p2@ENSMUST00000103547
Mm9::chr12:117151027..117151050,-p1@ENSMUST00000103547
Mm9::chr12:117191195..117191211,-p2@ENSMUST00000103549
Mm9::chr12:117191221..117191244,-p1@ENSMUST00000103549
Mm9::chr12:117238717..117238727,-p1@ENSMUST00000103552
Mm9::chr12:4599942..4599953,+p5@Itsn2
Mm9::chr12:93042811..93042816,-p@chr12:93042811..93042816
-
Mm9::chr13:113257070..113257088,+p@chr13:113257070..113257088
+
Mm9::chr13:19824798..19824823,-p3@A530099J19Rik
Mm9::chr13:24487125..24487148,+p6@Cmah
Mm9::chr13:24506667..24506683,-p3@uc007pvs.1
Mm9::chr13:24506803..24506816,-p2@uc007pvs.1
Mm9::chr13:30776511..30776542,-p@chr13:30776511..30776542
-
Mm9::chr14:101862299..101862327,-p4@Tbc1d4
Mm9::chr14:101862396..101862406,-p7@Tbc1d4
Mm9::chr14:101862426..101862447,-p5@Tbc1d4
Mm9::chr14:16767413..16767423,-p@chr14:16767413..16767423
-
Mm9::chr14:33976140..33976153,-p@chr14:33976140..33976153
-
Mm9::chr14:34150621..34150629,+p@chr14:34150621..34150629
+
Mm9::chr14:50977560..50977573,+p@chr14:50977560..50977573
+
Mm9::chr14:50977579..50977591,+p@chr14:50977579..50977591
+
Mm9::chr14:66589721..66589740,+p13@Clu
Mm9::chr14:70679679..70679713,-p@chr14:70679679..70679713
-
Mm9::chr15:100610674..100610678,+p@chr15:100610674..100610678
+
Mm9::chr15:79728136..79728187,+p@chr15:79728136..79728187
+
Mm9::chr15:79731617..79731628,+p@chr15:79731617..79731628
+
Mm9::chr15:79872853..79872879,+p@chr15:79872853..79872879
+
Mm9::chr15:96839417..96839438,-p@chr15:96839417..96839438
-
Mm9::chr15:98457062..98457072,+p@chr15:98457062..98457072
+
Mm9::chr15:98457111..98457118,+p@chr15:98457111..98457118
+
Mm9::chr16:10480158..10480173,+p3@Ciita
Mm9::chr16:19067325..19067338,+p@chr16:19067325..19067338
+
Mm9::chr16:19218511..19218520,-p@chr16:19218511..19218520
-
Mm9::chr16:19235714..19235723,-p@chr16:19235714..19235723
-
Mm9::chr16:19236184..19236202,-p@chr16:19236184..19236202
-
Mm9::chr16:19236303..19236306,-p@chr16:19236303..19236306
-
Mm9::chr16:19236311..19236344,-p@chr16:19236311..19236344
-
Mm9::chr16:19236911..19236922,-p@chr16:19236911..19236922
-
Mm9::chr16:19236939..19236949,-p@chr16:19236939..19236949
-
Mm9::chr16:19236953..19236959,-p@chr16:19236953..19236959
-
Mm9::chr16:19236961..19236985,-p@chr16:19236961..19236985
-
Mm9::chr16:19236991..19237000,-p@chr16:19236991..19237000
-
Mm9::chr16:19241367..19241377,+p@chr16:19241367..19241377
+
Mm9::chr16:24013306..24013312,-p@chr16:24013306..24013312
-
Mm9::chr16:3563826..3563831,+p@chr16:3563826..3563831
+
Mm9::chr16:36642828..36642839,-p3@Cd86
Mm9::chr16:36828310..36828355,-p2@Eaf2
Mm9::chr17:28389483..28389526,+p@chr17:28389483..28389526
+
Mm9::chr17:35342428..35342455,-p2@Lta
Mm9::chr17:36046169..36046191,-p11@Atat1
Mm9::chr17:37383876..37383891,+p1@ENSMUST00000172477
Mm9::chr17:37383896..37383899,+p2@ENSMUST00000172477
Mm9::chr17:47807638..47807650,-p@chr17:47807638..47807650
-
Mm9::chr17:75917733..75917762,-p@chr17:75917733..75917762
-
Mm9::chr17:8428972..8428983,+p5@Ccr6
Mm9::chr18:24555922..24555925,+p@chr18:24555922..24555925
+
Mm9::chr18:39334524..39334570,+p@chr18:39334524..39334570
+
Mm9::chr19:25102480..25102493,+p@chr19:25102480..25102493
+
Mm9::chr19:44483254..44483266,-p@chr19:44483254..44483266
-
Mm9::chr1:129755606..129755622,-p@chr1:129755606..129755622
-
Mm9::chr1:132697212..132697217,+p1@Fcamr
Mm9::chr1:154383580..154383615,-p@chr1:154383580..154383615
-
Mm9::chr1:156731607..156731615,-p@chr1:156731607..156731615
-
Mm9::chr1:156731630..156731643,-p@chr1:156731630..156731643
-
Mm9::chr1:156731650..156731660,-p@chr1:156731650..156731660
-
Mm9::chr1:156901932..156901941,-p@chr1:156901932..156901941
-
Mm9::chr1:156901987..156901994,-p@chr1:156901987..156901994
-
Mm9::chr1:158867967..158867973,-p@chr1:158867967..158867973
-
Mm9::chr1:174520594..174520606,-p1@Slamf8
Mm9::chr1:175421064..175421071,-p@chr1:175421064..175421071
-
Mm9::chr1:175466116..175466161,-p1@BC094916
Mm9::chr1:175961843..175961859,-p3@Ifi205
Mm9::chr2:11443327..11443341,+p@chr2:11443327..11443341
+
Mm9::chr2:124536831..124536842,-p@chr2:124536831..124536842
-
Mm9::chr2:152582497..152582526,+p@chr2:152582497..152582526
+
Mm9::chr2:152582794..152582807,+p@chr2:152582794..152582807
+
Mm9::chr2:153750777..153750817,+p@chr2:153750777..153750817
+
Mm9::chr2:61416606..61416674,+p2@Tank
Mm9::chr2:73291926..73291941,-p3@Wipf1
Mm9::chr2:73291945..73291957,-p7@Wipf1
Mm9::chr2:73291975..73291990,-p4@Wipf1
Mm9::chr3:135766485..135766490,-p@chr3:135766485..135766490
-
Mm9::chr3:135988892..135988911,-p3@Bank1
Mm9::chr3:87181728..87181743,-p@chr3:87181728..87181743
-
Mm9::chr3:87316559..87316571,-p@chr3:87316559..87316571
-
Mm9::chr4:122604700..122604706,-p@chr4:122604700..122604706
-
Mm9::chr4:130488147..130488154,+p@chr4:130488147..130488154
+
Mm9::chr4:133308619..133308671,-p@chr4:133308619..133308671
-
Mm9::chr4:138331691..138331699,+p3@Pla2g2d
Mm9::chr4:138331712..138331729,+p1@Pla2g2d
Mm9::chr4:32252088..32252105,+p@chr4:32252088..32252105
+
Mm9::chr4:32325858..32325865,+p18@Bach2
Mm9::chr4:59300270..59300286,+p@chr4:59300270..59300286
+
Mm9::chr4:59300300..59300323,+p@chr4:59300300..59300323
+
Mm9::chr4:8842902..8842938,+p@chr4:8842902..8842938
+
Mm9::chr5:101668666..101668677,-p@chr5:101668666..101668677
-
Mm9::chr5:101668696..101668728,-p@chr5:101668696..101668728
-
Mm9::chr5:13398704..13398726,+p8@Sema3a
Mm9::chr5:44260699..44260731,-p@chr5:44260699..44260731
-
Mm9::chr5:96385935..96385952,+p1@Cxcl13
Mm9::chr5:96387735..96387757,+p@chr5:96387735..96387757
+
Mm9::chr6:108681359..108681398,-p@chr6:108681359..108681398
-
Mm9::chr6:120413338..120413353,+p2@Il17ra
Mm9::chr6:127022920..127022928,+p1@Fgf23
Mm9::chr6:129358872..129358894,+p1@Clec9a
Mm9::chr6:129358934..129358945,+p2@Clec9a
Mm9::chr6:129358948..129358955,+p3@Clec9a
Mm9::chr6:129572703..129572729,-p1@Klrk1
Mm9::chr6:129628862..129628871,-p@chr6:129628862..129628871
-
Mm9::chr6:42930664..42930665,+p1@ENSMUST00000167638
Mm9::chr6:43026981..43026982,-p@chr6:43026981..43026982
-
Mm9::chr6:67741017..67741021,+p1@ENSMUST00000103307
Mm9::chr6:67811124..67811133,+p1@ENSMUST00000103309
Mm9::chr6:67892543..67892559,-p1@ENSMUST00000103312
Mm9::chr6:67986782..67986807,+p1@ENSMUST00000103315
Mm9::chr6:68206370..68206378,+p1@ENSMUST00000103320
Mm9::chr6:68375561..68375578,+p1@ENSMUST00000103323
Mm9::chr6:68387411..68387446,+p1@ENSMUST00000103324
Mm9::chr6:68468975..68468991,+p1@ENSMUST00000103325
Mm9::chr6:68520727..68520733,+p1@ENSMUST00000103327
Mm9::chr6:68719109..68719135,-p1@ENSMUST00000103333
Mm9::chr6:68719140..68719153,-p2@ENSMUST00000103333
Mm9::chr6:68785324..68785330,-p1@ENSMUST00000103335
Mm9::chr6:68830687..68830707,-p@chr6:68830687..68830707
-
Mm9::chr6:68967122..68967129,-p1@ENSMUST00000103341
Mm9::chr6:69193711..69193735,-p1@ENSMUST00000101325
Mm9::chr6:69367435..69367450,-p1@ENSMUST00000103353
Mm9::chr6:69494934..69494939,-p1@ENSMUST00000103356
Mm9::chr6:69526509..69526516,-p1@ENSMUST00000103357
Mm9::chr6:69557825..69557850,-p1@ENSMUST00000103359
Mm9::chr6:69599350..69599381,-p1@ENSMUST00000166380
Mm9::chr6:69651325..69651338,-p1@ENSMUST00000103363
Mm9::chr6:69677142..69677157,-p1@ENSMUST00000103364
Mm9::chr6:69808896..69808926,-p1@ENSMUST00000103369
Mm9::chr6:70024596..70024615,-p1@ENSMUST00000103377
Mm9::chr6:70165395..70165398,+p1@ENSMUST00000103383
Mm9::chr6:70265461..70265467,-p1@ENSMUST00000103387
Mm9::chr6:70321426..70321440,+p1@ENSMUST00000103391
Mm9::chr6:70357012..70357017,-p1@ENSMUST00000103393
Mm9::chr6:70592357..70592379,+p@chr6:70592357..70592379
+
Mm9::chr6:70653525..70653549,+p1@ENSMUST00000103404
Mm9::chr6:70668859..70668883,-p@chr6:70668859..70668883
-
Mm9::chr6:70669196..70669209,+p2@uc009cfw.1
p2@uc009cfx.1
Mm9::chr6:70671704..70671710,+p@chr6:70671704..70671710
+
Mm9::chr6:70672832..70672845,+p@chr6:70672832..70672845
+
Mm9::chr7:133560217..133560239,-p@chr7:133560217..133560239
-
Mm9::chr7:147542981..147543009,-p@chr7:147542981..147543009
-
Mm9::chr7:20456709..20456724,-p@chr7:20456709..20456724
-
Mm9::chr7:20456758..20456773,-p@chr7:20456758..20456773
-
Mm9::chr7:25682260..25682293,-p@chr7:25682260..25682293
-
Mm9::chr7:25917492..25917512,-p1@Pou2f2
Mm9::chr7:63023588..63023603,+p1@Siglech
Mm9::chr7:63023625..63023636,+p2@Siglech
Mm9::chr8:14974966..14974976,+p@chr8:14974966..14974976
+
Mm9::chr8:17535661..17535677,-p5@Csmd1
Mm9::chr8:26712935..26712944,+p8@Whsc1l1
Mm9::chr8:3878549..3878568,-p1@Cd209d
Mm9::chr8:3918216..3918219,-p@chr8:3918216..3918219
-
Mm9::chr8:3926807..3926838,-p1@Cd209b
Mm9::chr8:46495249..46495254,-p@chr8:46495249..46495254
-
Mm9::chr8:97269577..97269593,+p1@Ccl22
Mm9::chr9:107496800..107496808,-p@chr9:107496800..107496808
-
Mm9::chr9:123771230..123771237,-p2@Xcr1
Mm9::chr9:123771240..123771252,-p1@Xcr1
Mm9::chr9:57987357..57987361,+p@chr9:57987357..57987361
+
Mm9::chr9:63685871..63685874,-p@chr9:63685871..63685874
-
Mm9::chrX:104451370..104451403,+p1@Gpr174
Mm9::chrX:104451405..104451426,+p2@Gpr174
Mm9::chrX:39421136..39421175,+p2@Xiap


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0009605response to external stimulus0.00215457038933645
GO:0006955immune response0.00215457038933645
GO:0002376immune system process0.00372281790332076
GO:0005529sugar binding0.00444509241888022
GO:0005515protein binding0.00444509241888022
GO:0008009chemokine activity0.00444509241888022
GO:0042330taxis0.00444509241888022
GO:0006935chemotaxis0.00444509241888022
GO:0007626locomotory behavior0.00444509241888022
GO:0042379chemokine receptor binding0.00444509241888022
GO:0006954inflammatory response0.00451380343676688
GO:0005125cytokine activity0.00473078044212999
GO:0009891positive regulation of biosynthetic process0.0092813358774555
GO:0001664G-protein-coupled receptor binding0.00962256695363191
GO:0030246carbohydrate binding0.0102499229371477
GO:0005537mannose binding0.0108580011413837
GO:0009611response to wounding0.0132571087858662
GO:0019955cytokine binding0.01341970132435
GO:0007610behavior0.0170790510750915
GO:0048535lymph node development0.0177755666628
GO:0005615extracellular space0.0203710452660301
GO:0048029monosaccharide binding0.0248143839806163
GO:0009893positive regulation of metabolic process0.0276989780174291
GO:0044421extracellular region part0.0276989780174291
GO:0001816cytokine production0.0276989780174291
GO:0019956chemokine binding0.0276989780174291
GO:0001637G-protein chemoattractant receptor activity0.0276989780174291
GO:0004950chemokine receptor activity0.0276989780174291
GO:0005102receptor binding0.032902505736339
GO:0065007biological regulation0.0337879744842508
GO:0032394MHC class Ib receptor activity0.0373504014203621
GO:0030338CMP-N-acetylneuraminate monooxygenase activity0.0373504014203621
GO:0042221response to chemical stimulus0.0373504014203621
GO:0042108positive regulation of cytokine biosynthetic process0.0373504014203621
GO:0048468cell development0.0392665570293052
GO:0007249I-kappaB kinase/NF-kappaB cascade0.0421409933295321
GO:0006952defense response0.0479913544783807
GO:0009897external side of plasma membrane0.0479913544783807
GO:0045727positive regulation of translation0.0479913544783807
GO:0031328positive regulation of cellular biosynthetic process0.0479913544783807
GO:0008037cell recognition0.0479913544783807
GO:0032608interferon-beta production0.0479913544783807
GO:0046381CMP-N-acetylneuraminate metabolic process0.0479913544783807
GO:0047485protein N-terminus binding0.0479913544783807
GO:0045357regulation of interferon-beta biosynthetic process0.0479913544783807
GO:0016046detection of fungus0.0479913544783807
GO:0045359positive regulation of interferon-beta biosynthetic process0.0479913544783807
GO:0002223stimulatory C-type lectin receptor signaling pathway0.0479913544783807
GO:0016716oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen0.0479913544783807
GO:0050973detection of mechanical stimulus during equilibrioception0.0479913544783807
GO:0045350interferon-beta biosynthetic process0.0479913544783807
GO:0001879detection of yeast0.0479913544783807
GO:0048522positive regulation of cellular process0.0481398165543465
GO:0004872receptor activity0.0485393982646544
GO:0009889regulation of biosynthetic process0.0488526161048061



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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