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UBERON:0009955

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Name:neurogenic placode
Namespace:FANTOM
Definition:"Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
Xrefs:
links:

TAO:0001309

ZFA:0001309
Synonyms: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]
"placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002546(cranial placode)



Children

is a:UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_3a60b0cd6868b4b766bca2e34977f532p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_3a60b0cd6868b4b766bca2e34977f532p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_3a60b0cd6868b4b766bca2e34977f532p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_3a60b0cd6868b4b766bca2e34977f532p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_3a60b0cd6868b4b766bca2e34977f532p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_3a60b0cd6868b4b766bca2e34977f532p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_3a60b0cd6868b4b766bca2e34977f532p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_3a60b0cd6868b4b766bca2e34977f532p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_3a60b0cd6868b4b766bca2e34977f532p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_3a60b0cd6868b4b766bca2e34977f532p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_3a60b0cd6868b4b766bca2e34977f532p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_3a60b0cd6868b4b766bca2e34977f532p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_3a60b0cd6868b4b766bca2e34977f532p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_3a60b0cd6868b4b766bca2e34977f532p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_3a60b0cd6868b4b766bca2e34977f532p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_3a60b0cd6868b4b766bca2e34977f532p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_3a60b0cd6868b4b766bca2e34977f532p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_3a60b0cd6868b4b766bca2e34977f532p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_3a60b0cd6868b4b766bca2e34977f532p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_3a60b0cd6868b4b766bca2e34977f532p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_3a60b0cd6868b4b766bca2e34977f532p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_3a60b0cd6868b4b766bca2e34977f532p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_3a60b0cd6868b4b766bca2e34977f532p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_3a60b0cd6868b4b766bca2e34977f532p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_3a60b0cd6868b4b766bca2e34977f532p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_3a60b0cd6868b4b766bca2e34977f532p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_3a60b0cd6868b4b766bca2e34977f532p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_3a60b0cd6868b4b766bca2e34977f532p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_3a60b0cd6868b4b766bca2e34977f532p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_3a60b0cd6868b4b766bca2e34977f532p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_3a60b0cd6868b4b766bca2e34977f532p6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_3a60b0cd6868b4b766bca2e34977f532p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_3a60b0cd6868b4b766bca2e34977f532p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_3a60b0cd6868b4b766bca2e34977f532p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_3a60b0cd6868b4b766bca2e34977f532p3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_3a60b0cd6868b4b766bca2e34977f532p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_3a60b0cd6868b4b766bca2e34977f532p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:133802857..133802884, +

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