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MCL coexpression mm9:116

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:10277894..10277923,-p3@Rab32
Mm9::chr10:116719318..116719336,-p1@Lyz2
Mm9::chr10:126601827..126601842,+p10@B4galnt1
Mm9::chr10:77008884..77008902,+p@chr10:77008884..77008902
+
Mm9::chr10:79538156..79538198,-p3@Sbno2
Mm9::chr10:80986993..80987004,-p6@Gna15
Mm9::chr10:80987016..80987030,-p2@Gna15
Mm9::chr11:114751586..114751684,+p1@Cd300a
Mm9::chr11:115336959..115337041,+p1@Armc7
Mm9::chr11:115569852..115569928,-p1@Grb2
Mm9::chr11:120493995..120494028,+p@chr11:120493995..120494028
+
Mm9::chr11:70246129..70246209,+p1@Arrb2
Mm9::chr11:70466379..70466416,-p@chr11:70466379..70466416
-
Mm9::chr11:70468102..70468118,-p2@Pfn1
Mm9::chr11:70468126..70468143,-p1@Pfn1
Mm9::chr12:4234123..4234154,+p2@uc007mxq.1
Mm9::chr13:37870307..37870337,+p5@Rreb1
Mm9::chr13:51830052..51830062,-p8@Sema4d
Mm9::chr13:51830064..51830116,-p2@Sema4d
Mm9::chr13:55122557..55122600,-p1@Hk3
Mm9::chr13:95746390..95746407,+p3@Wdr41
Mm9::chr14:61928656..61928692,+p1@Arl11
Mm9::chr14:63456566..63456591,+p2@Wdfy2
Mm9::chr15:100446051..100446108,+p1@Dazap2
p1@Gm2444
Mm9::chr15:103140856..103140875,-p3@Gpr84
Mm9::chr15:103140879..103140907,-p1@Gpr84
Mm9::chr15:78075283..78075296,+p6@Ncf4
Mm9::chr15:78075378..78075436,+p2@Ncf4
Mm9::chr15:82863659..82863670,-p3@Nfam1
Mm9::chr15:82863682..82863704,-p2@Nfam1
Mm9::chr17:34727107..34727150,+p5@Gpsm3
Mm9::chr17:56092051..56092122,+p1@Ebi3
Mm9::chr17:56092151..56092162,+p3@Ebi3
Mm9::chr17:8503966..8504033,+p1@Sft2d1
Mm9::chr19:4125946..4125999,+p1@Tmem134
Mm9::chr1:136311991..136312081,+p1@Adipor1
Mm9::chr1:136312287..136312362,+p2@Adipor1
Mm9::chr1:173164407..173164418,-p2@Fcer1g
Mm9::chr1:173164421..173164455,-p1@Fcer1g
Mm9::chr1:186556410..186556424,-p1@Hlx
Mm9::chr1:74421717..74421746,+p5@Slc11a1
Mm9::chr1:74421782..74421803,+p1@Slc11a1
Mm9::chr2:129418739..129418767,+p5@Sirpa
Mm9::chr2:129418768..129418782,+p11@Sirpa
Mm9::chr2:129418785..129418794,+p15@Sirpa
Mm9::chr2:152934210..152934220,+p2@Hck
Mm9::chr2:167757836..167757879,+p1@Ptpn1
Mm9::chr2:167757883..167757900,+p2@Ptpn1
Mm9::chr2:25052262..25052275,-p3@A830007P12Rik
Mm9::chr2:25052279..25052343,-p1@A830007P12Rik
Mm9::chr2:25278754..25278770,+p2@Fut7
Mm9::chr2:90936886..90936898,+p5@Sfpi1
Mm9::chr2:90936901..90936945,+p1@Sfpi1
Mm9::chr2:90936947..90936977,+p2@Sfpi1
Mm9::chr2:90936978..90937023,+p3@Sfpi1
Mm9::chr2:91826377..91826399,-p@chr2:91826377..91826399
-
Mm9::chr3:107081946..107081976,+p@chr3:107081946..107081976
+
Mm9::chr3:94946268..94946284,-p1@Tnfaip8l2
Mm9::chr3:94946285..94946296,-p2@Tnfaip8l2
Mm9::chr3:95032677..95032754,+p1@Cdc42se1
Mm9::chr4:124373185..124373229,+p@chr4:124373185..124373229
+
Mm9::chr4:124373245..124373258,+p@chr4:124373245..124373258
+
Mm9::chr4:125773954..125773972,+p1@Lsm10
Mm9::chr4:132352276..132352304,-p1@BC013712
Mm9::chr4:133684622..133684685,-p1@Sh3bgrl3
Mm9::chr4:43575059..43575071,-p4@Tln1
Mm9::chr4:61990561..61990594,-p@chr4:61990561..61990594
-
Mm9::chr5:109987976..109988033,-p1@Crlf2
Mm9::chr5:115956677..115956762,+p1@Pxn
Mm9::chr5:116081991..116082042,+p1@Rab35
Mm9::chr5:122841899..122841937,+p1@Arpc3
Mm9::chr5:66543142..66543201,-p4@Rbm47
Mm9::chr6:115626001..115626022,+p2@ENSMUST00000068960
Mm9::chr6:38868968..38868994,+p2@Tbxas1
Mm9::chr6:72499408..72499422,+p3@Capg
Mm9::chr6:72499424..72499472,+p1@Capg
Mm9::chr7:108509764..108509801,+p5@Arap1
Mm9::chr7:109398600..109398637,-p1@Rhog
Mm9::chr7:117916919..117916937,+p15@Ampd3
Mm9::chr7:133843892..133843912,-p@chr7:133843892..133843912
-
Mm9::chr7:147178400..147178419,-p1@Adam8
Mm9::chr7:152469820..152469846,-p1@Tpcn2
Mm9::chr7:16832824..16832828,-p@chr7:16832824..16832828
-
Mm9::chr7:28140963..28140996,-p1@Shkbp1
Mm9::chr7:31198763..31198850,+p1@Tyrobp
Mm9::chr7:52973260..52973288,-p3@Sphk2
Mm9::chr7:87170879..87170914,+p2@Zfp710
Mm9::chr7:89003949..89004011,+p1@Tm6sf1
Mm9::chr8:122364431..122364449,-p1@Cotl1
Mm9::chr8:124956794..124956823,-p1@Cyba
Mm9::chr8:124956824..124956846,-p2@Cyba
Mm9::chr8:59966387..59966402,-p4@Sap30
Mm9::chr8:97094070..97094083,+p@chr8:97094070..97094083
+
Mm9::chr9:106105439..106105502,+p1@Twf2
Mm9::chr9:107537661..107537684,-p1@Gnai2
Mm9::chr9:119249107..119249153,-p1@Myd88
Mm9::chr9:21330588..21330651,+p1@AB124611
Mm9::chr9:65427850..65427868,-p1@Plekho2
Mm9::chrX:20508646..20508660,-p3@Cfp
Mm9::chrX:45806918..45806939,-p@chrX:45806918..45806939
-
Mm9::chrX:7339829..7339855,+p3@Tfe3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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