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MCL coexpression mm9:707

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:34036959..34036965,+p@chr11:34036959..34036965
+
Mm9::chr1:120524520..120524528,+p1@Tfcp2l1
Mm9::chr4:138529156..138529170,+p3@Tmco4
Mm9::chr4:19849701..19849719,-p3@Atp6v0d2
Mm9::chr6:125271408..125271424,+p4@Scnn1a
Mm9::chr7:51496594..51496610,-p@chr7:51496594..51496610
-
Mm9::chr9:45211279..45211293,+p3@Fxyd2
Mm9::chr9:45211310..45211324,+p7@Fxyd2
Mm9::chr9:45211336..45211351,+p5@Fxyd2
Mm9::chr9:45218158..45218182,-p@chr9:45218158..45218182
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0015672monovalent inorganic cation transport0.00158039861051825
GO:0006812cation transport0.00325586580294328
GO:0031402sodium ion binding0.00347223247617122
GO:0015075ion transmembrane transporter activity0.00347223247617122
GO:0006811ion transport0.00347223247617122
GO:0006814sodium ion transport0.00347223247617122
GO:0022891substrate-specific transmembrane transporter activity0.00347223247617122
GO:0022857transmembrane transporter activity0.00470117197145586
GO:0022892substrate-specific transporter activity0.00547769025957714
GO:0031420alkali metal ion binding0.00581585755134062
GO:0015280amiloride-sensitive sodium channel activity0.0146354549967632
GO:0005216ion channel activity0.0170221709196813
GO:0022838substrate specific channel activity0.0170221709196813
GO:0022803passive transmembrane transporter activity0.0170221709196813
GO:0015267channel activity0.0170221709196813
GO:0030001metal ion transport0.0173381165054786
GO:0008324cation transmembrane transporter activity0.0223209777831049
GO:0005272sodium channel activity0.0299144025439421
GO:0015985energy coupled proton transport, down electrochemical gradient0.0299144025439421
GO:0015986ATP synthesis coupled proton transport0.0299144025439421
GO:0006810transport0.0299144025439421
GO:0051234establishment of localization0.0299144025439421
GO:0006754ATP biosynthetic process0.0299144025439421
GO:0006753nucleoside phosphate metabolic process0.0299144025439421
GO:0046933hydrogen ion transporting ATP synthase activity, rotational mechanism0.0299144025439421
GO:0016469proton-transporting two-sector ATPase complex0.0299144025439421
GO:0046961hydrogen ion transporting ATPase activity, rotational mechanism0.0299144025439421
GO:0046034ATP metabolic process0.0299144025439421
GO:0050909sensory perception of taste0.0299144025439421
GO:0009206purine ribonucleoside triphosphate biosynthetic process0.0299144025439421
GO:0009201ribonucleoside triphosphate biosynthetic process0.0299144025439421
GO:0009145purine nucleoside triphosphate biosynthetic process0.0299144025439421
GO:0019829cation-transporting ATPase activity0.0299144025439421
GO:0009142nucleoside triphosphate biosynthetic process0.0299144025439421
GO:0051179localization0.0299144025439421
GO:0009205purine ribonucleoside triphosphate metabolic process0.0299144025439421
GO:0009199ribonucleoside triphosphate metabolic process0.0299144025439421
GO:0009144purine nucleoside triphosphate metabolic process0.0299144025439421
GO:0006119oxidative phosphorylation0.0299144025439421
GO:0015992proton transport0.0299144025439421
GO:0006752group transfer coenzyme metabolic process0.0299144025439421
GO:0009141nucleoside triphosphate metabolic process0.0299144025439421
GO:0009152purine ribonucleotide biosynthetic process0.0299144025439421
GO:0006818hydrogen transport0.0299144025439421
GO:0044425membrane part0.0299144025439421
GO:0009260ribonucleotide biosynthetic process0.0303630143986193
GO:0009150purine ribonucleotide metabolic process0.030995750025988
GO:0006164purine nucleotide biosynthetic process0.030995750025988
GO:0009259ribonucleotide metabolic process0.0326853709778113
GO:0006163purine nucleotide metabolic process0.0338509070775254
GO:0042625ATPase activity, coupled to transmembrane movement of ions0.0351294593934611
GO:0009108coenzyme biosynthetic process0.0351294593934611
GO:0015276ligand-gated ion channel activity0.0351294593934611
GO:0022834ligand-gated channel activity0.0351294593934611
GO:0015078hydrogen ion transmembrane transporter activity0.0377902766736186
GO:0015077monovalent inorganic cation transmembrane transporter activity0.0384520175938953
GO:0051188cofactor biosynthetic process0.0384520175938953
GO:0046872metal ion binding0.0411519612016291
GO:0030955potassium ion binding0.0418827610497871
GO:0043167ion binding0.0418827610497871
GO:0042626ATPase activity, coupled to transmembrane movement of substances0.0418827610497871
GO:0043492ATPase activity, coupled to movement of substances0.0418827610497871
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances0.0418827610497871
GO:0016020membrane0.0418827610497871
GO:0009165nucleotide biosynthetic process0.0427602571819404
GO:0015399primary active transmembrane transporter activity0.043502538955442
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity0.043502538955442
GO:0022890inorganic cation transmembrane transporter activity0.0438565654656228



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
urinary system structure9.09e-1518
renal system1.01e-1319
kidney1.75e-1214
kidney mesenchyme1.75e-1214
upper urinary tract1.75e-1214
kidney rudiment1.75e-1214
kidney field1.75e-1214
cavitated compound organ3.97e-0821


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.23085
MA0004.10.946922
MA0006.10.210471
MA0007.10.346734
MA0009.11.83729
MA0014.10.0290544
MA0017.11.22627
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.10.219287
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.10.279998
MA0043.10.875991
MA0046.10.816137
MA0048.10.509074
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.866263
MA0056.10
MA0057.10.216209
MA0058.10.752621
MA0059.10.28489
MA0060.10.145297
MA0061.10.504772
MA0063.10
MA0066.13.12793
MA0067.11.12095
MA0068.10.484739
MA0069.10.801381
MA0070.10.791856
MA0071.11.02422
MA0072.10.783532
MA0073.10.00409435
MA0074.10.451832
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.305576
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.11.86507
MA0089.10
MA0090.10.877277
MA0091.10.372635
MA0092.10.329444
MA0093.11.86949
MA0095.10
MA0098.10
MA0100.11.12255
MA0101.10.292867
MA0103.10.67982
MA0105.10.632131
MA0106.10.543967
MA0107.10.237082
MA0108.21.51404
MA0109.10
MA0111.10.90605
MA0113.10.516916
MA0114.10.167085
MA0115.10.878749
MA0116.11.13868
MA0117.10.846964
MA0119.10.796817
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.11.18666
MA0139.10.772315
MA0140.10.440804
MA0141.12.85335
MA0142.10.674191
MA0143.10.53259
MA0144.10.169559
MA0145.14.401
MA0146.10.412111
MA0147.10.530496
MA0148.10.375491
MA0149.10.2978
MA0062.20.314778
MA0035.20.44524
MA0039.20.026226
MA0138.21.44221
MA0002.20.391079
MA0137.20.257017
MA0104.20.828906
MA0047.20.495607
MA0112.21.95537
MA0065.21.03323
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.10.862467
MA0155.10.186607
MA0156.10.694831
MA0157.10.642984
MA0158.10
MA0159.10.550545
MA0160.10.378276
MA0161.10
MA0162.10.134999
MA0163.10.252535
MA0164.10.471016
MA0080.21.2443
MA0018.20.480226
MA0099.20.584892
MA0079.20.00058004
MA0102.21.49914
MA0258.11.47561
MA0259.10.170828
MA0442.10
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