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UBERON:0010323

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Name:cranial skeletal system
Namespace:FANTOM
Definition:"Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [VSAO:0000049]
Xrefs:
links:

AAO:0000109
AAO:0010185
TAO:0000737
VSAO:0000049
XAO:0003075

ZFA:0000737
Synonyms: "cranial skeleton" NARROW []
"cranium" RELATED INCONSISTENT [ZFA:0000737]
Comments:Note that the cranial skeleton includes the pharyngeal arch skeleton. It is thus more inclusive that the cranium itself, and extends beyond the head in tetrapods. The AAO class called 'skull' belongs here, as it includes the whole splanchnocranium. Editor notes: we use 'cranial skeletal system', so that we can include the skull, which has joints/sutures as parts (recall, we follow FMA in distinguishing between the skeleton and skeletal system - only the latter includes joints)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system)
part_of:UBERON:0011137(axial skeletal system)



Children

part of:UBERON:0003113 (dermatocranium),UBERON:0003129 (skull),UBERON:0003672 (dentition),UBERON:0011159 (primary subdivision of cranial skeletal system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010323 (cranial skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c6dd7ae36987a858c25c02140b74a2a6p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c6dd7ae36987a858c25c02140b74a2a6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c6dd7ae36987a858c25c02140b74a2a6p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c6dd7ae36987a858c25c02140b74a2a6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_c6dd7ae36987a858c25c02140b74a2a6p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_c6dd7ae36987a858c25c02140b74a2a6p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_c6dd7ae36987a858c25c02140b74a2a6p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c6dd7ae36987a858c25c02140b74a2a6p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_c6dd7ae36987a858c25c02140b74a2a6p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c6dd7ae36987a858c25c02140b74a2a6p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_c6dd7ae36987a858c25c02140b74a2a6p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c6dd7ae36987a858c25c02140b74a2a6p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c6dd7ae36987a858c25c02140b74a2a6p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c6dd7ae36987a858c25c02140b74a2a6p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_c6dd7ae36987a858c25c02140b74a2a6p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c6dd7ae36987a858c25c02140b74a2a6p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c6dd7ae36987a858c25c02140b74a2a6p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c6dd7ae36987a858c25c02140b74a2a6p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c6dd7ae36987a858c25c02140b74a2a6p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c6dd7ae36987a858c25c02140b74a2a6p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c6dd7ae36987a858c25c02140b74a2a6p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c6dd7ae36987a858c25c02140b74a2a6p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_c6dd7ae36987a858c25c02140b74a2a6p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c6dd7ae36987a858c25c02140b74a2a6p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_c6dd7ae36987a858c25c02140b74a2a6p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c6dd7ae36987a858c25c02140b74a2a6p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c6dd7ae36987a858c25c02140b74a2a6p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_c6dd7ae36987a858c25c02140b74a2a6p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c6dd7ae36987a858c25c02140b74a2a6p@chr12:109905399..109905416, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Bony structure that encases the central nervous system and the primary sense organs of sight, olfaction, hearing, and equilibrium.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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