Personal tools

UBERON:0006853

From FANTOM5_SSTAR

Jump to: navigation, search

Name:renal cortex tubule
Namespace:FANTOM
Xrefs:
links:

EMAPA:18976

MA:0002609

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007685(region of nephron tubule)
part_of:UBERON:0001225(cortex of kidney)



Children

is a:UBERON:0004134 (proximal tubule)
part of:CL:1000615 (kidney cortex tubule cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006853 (renal cortex tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_ea18818c427479f38e9d2159a86744e7p10@WWC1
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_ea18818c427479f38e9d2159a86744e7p10@WWC1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_d1988577bebb93851ff4a01bf30473d5p39@WWTR1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_d1988577bebb93851ff4a01bf30473d5p39@WWTR1
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_b42db06f9ebf35c89baa43b0e7233b2bp1@ENST00000491264
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_b42db06f9ebf35c89baa43b0e7233b2bp1@ENST00000491264
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_b7f3a45a8599054a745d254d8f8a660fp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_b7f3a45a8599054a745d254d8f8a660fp@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_b7f3a45a8599054a745d254d8f8a660fp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_b7f3a45a8599054a745d254d8f8a660fp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_b7f3a45a8599054a745d254d8f8a660fp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_b7f3a45a8599054a745d254d8f8a660fp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_b7f3a45a8599054a745d254d8f8a660fp@chr16:62055187..62055188, +
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_b7f3a45a8599054a745d254d8f8a660fp@chr16:61687533..61687551, -
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_770a8485e9b55a38044d658db26dba17p4@MEGF11
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_770a8485e9b55a38044d658db26dba17p4@MEGF11
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_3676ec1e9fabf92c83fa8fa2bf211e5fp@chr9:114828174..114828179, +
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_3676ec1e9fabf92c83fa8fa2bf211e5fp@chr9:114828174..114828179, +
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_8cb1281699042ae03296c6343cb48438p@chr7:140227349..140227360, -
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_8cb1281699042ae03296c6343cb48438p@chr7:140227349..140227360, -
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_bc8036fa000dffba1312ffd9e143d973p9@VARS2
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_bc8036fa000dffba1312ffd9e143d973p9@VARS2
6.91e-39FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_d93519abef1db65057d9a7d1abd13d2dp11@VARS2
6.91e-39FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_d93519abef1db65057d9a7d1abd13d2dp11@VARS2
1.49e-38FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_721445b0f847970e555f8c77a11c7d73p1@ENST00000534431
1.49e-38FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_721445b0f847970e555f8c77a11c7d73p1@ENST00000534431
2.64e-38FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_04e9fbe8d8bf114e606603c259788f16p@chr7:53466339..53466356, -
2.64e-38FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_04e9fbe8d8bf114e606603c259788f16p@chr7:53466339..53466356, -
3.48e-38FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_2e62b2533a74f673dc291fbc2c3c784fp@chr17:18160552..18160565, -
3.48e-38FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_2e62b2533a74f673dc291fbc2c3c784fp@chr17:18160552..18160565, -
3.86e-38FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_f41eb38c12cc4de55b36699a92d5eabbp3@CLDN16
3.86e-38FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_f41eb38c12cc4de55b36699a92d5eabbp3@CLDN16
5.76e-38FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_f0864bbcf02ff07885560fa8d5cfe308p@chr1:1100457..1100470, +
5.76e-38FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_f0864bbcf02ff07885560fa8d5cfe308p@chr1:1100457..1100470, +
2.08e-36FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_fb2534621bc3c08a1a8b2ce07324aa0ap4@AIF1L
2.08e-36FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_fb2534621bc3c08a1a8b2ce07324aa0ap4@AIF1L
2.25e-35FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_77d4c7906c0cdede14f3daa4449c1368p4@PAX2
2.25e-35FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_77d4c7906c0cdede14f3daa4449c1368p4@PAX2
3.2e-35FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_99a2eb39bfc3f1bb494b15a2998b24cdp18@SCNN1A
3.2e-35FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_99a2eb39bfc3f1bb494b15a2998b24cdp18@SCNN1A
5.96e-34FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_00501f2a912b3bf99e42c5f1de090d7cp@chr6:31023284..31023287, -
5.96e-34FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_00501f2a912b3bf99e42c5f1de090d7cp@chr6:31023284..31023287, -
2.09e-33FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_f440e7f5c53885d2e8f3da05f4541d3cp11@PAX8
2.09e-33FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_f440e7f5c53885d2e8f3da05f4541d3cp11@PAX8
1.41e-32FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_6f8ad623d2ac4d409e130a95bd7cfa8ap2@C14orf105
1.41e-32FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_6f8ad623d2ac4d409e130a95bd7cfa8ap2@C14orf105
2.17e-32FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_3cbf678f1ae9a34510832fb5f47766a7p1@CLDN16
2.17e-32FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_3cbf678f1ae9a34510832fb5f47766a7p1@CLDN16
3.1e-30FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_711c8886d4cc7fb3f1735c6dc7222bbfp@chr3:112127710..112127713, -
3.1e-30FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_711c8886d4cc7fb3f1735c6dc7222bbfp@chr3:112127710..112127713, -
4.84e-30FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_bd63c369e08d2fed2896b580cf9762f2p@chr20:49347516..49347535, -
4.84e-30FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_bd63c369e08d2fed2896b580cf9762f2p@chr20:49347516..49347535, -
6.17e-30FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_ad71bb6e6140efa0c3770228113bbbcfp5@VARS2
6.17e-30FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_ad71bb6e6140efa0c3770228113bbbcfp5@VARS2
8.26e-30FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_4d58a811e1b81bc0bdae28e05875a062p3@AIF1L
8.26e-30FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_4d58a811e1b81bc0bdae28e05875a062p3@AIF1L
8.74e-30FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_06953e08bdca248ebb3af9aee0547c51p4@CLDN16
8.74e-30FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_06953e08bdca248ebb3af9aee0547c51p4@CLDN16
4.28e-29FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_4e86ad5168da86df8ad5e890f47ae4c9p@chr7:7606139..7606151, -
4.28e-29FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_4e86ad5168da86df8ad5e890f47ae4c9p@chr7:7606139..7606151, -
5.09e-29FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_59f0402caa7370a0b14953c63994fc57p4@VARS2
5.09e-29FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_59f0402caa7370a0b14953c63994fc57p4@VARS2
4.74e-28FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_91cbbe48ef51e4b574c6a86b2e55c68ap7@FXYD2
4.74e-28FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_91cbbe48ef51e4b574c6a86b2e55c68ap7@FXYD2
2.38e-27FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_6488da6851847ba412accbac0208790fp11@FXYD2
2.38e-27FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_6488da6851847ba412accbac0208790fp11@FXYD2
3.11e-27FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_71d8385273e1b3b731cf2dd4911c9ce6p2@ENST00000354541
3.11e-27FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_71d8385273e1b3b731cf2dd4911c9ce6p2@ENST00000354541
5.07e-27FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_69903dd9fd58a08aef9485168297a4bep@chr1:17519128..17519138, +
5.07e-27FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_69903dd9fd58a08aef9485168297a4bep@chr1:17519128..17519138, +
1.22e-26FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_0b5baf81032a4efce162befe63731480p5@ATP9B
1.22e-26FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_0b5baf81032a4efce162befe63731480p5@ATP9B
2.01e-25FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_000b97eec584325408419d39624107eep@chr7:98453821..98453843, -
2.01e-25FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_000b97eec584325408419d39624107eep@chr7:98453821..98453843, -
4.31e-25FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_0acb256a7d7217c2ba9027a4397cbcdcp7@AIF1L
4.31e-25FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_0acb256a7d7217c2ba9027a4397cbcdcp@chr2:167467988..167467993, -
4.31e-25FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_0acb256a7d7217c2ba9027a4397cbcdcp7@AIF1L
4.31e-25FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_0acb256a7d7217c2ba9027a4397cbcdcp@chr2:167467988..167467993, -
5.5e-25FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_ed599ca8915b7af1bae2048f089b7feep@chr2:189157368..189157381, -
5.5e-25FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_ed599ca8915b7af1bae2048f089b7feep@chr2:189157368..189157381, -
7.93e-25FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_cbec66529fedf25cb9a24804861775b0p@chr9:119741711..119741743, -
7.93e-25FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_cbec66529fedf25cb9a24804861775b0p@chr9:119741711..119741743, -
8.07e-25FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_5467c4438eb2096e9917ee6d193e2964p8@KLK6
8.07e-25FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_5467c4438eb2096e9917ee6d193e2964p8@KLK6
1.21e-24FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8c36308d875a29417bb05a6cf5dfd234p7@HOXA10
1.21e-24FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8c36308d875a29417bb05a6cf5dfd234p7@HOXA10
1.29e-24FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_79274cae88540f63f8bb57af054a1205p@chr20:6034241..6034256, -
1.29e-24FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_79274cae88540f63f8bb57af054a1205p@chr20:6034241..6034256, -
7.91e-24FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_7cdcd3380ca8e0316db5fa9ddfe59cdcp3@FXYD2
7.91e-24FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_7cdcd3380ca8e0316db5fa9ddfe59cdcp3@FXYD2
7.91e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_7cdcd3380ca8e0316db5fa9ddfe59cdcp2@B3GALT5
7.91e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_7cdcd3380ca8e0316db5fa9ddfe59cdcp2@B3GALT5
9.99e-24FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_f30235878295a74b77747c5c2d018554p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_f30235878295a74b77747c5c2d018554p3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_f30235878295a74b77747c5c2d018554p3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_f30235878295a74b77747c5c2d018554p@chr18:3456189..3456200, +
3.27e-23FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_cb378804c3d69df74f4b3103d9ad16f5p@chr12:6484832..6484841, +
3.27e-23FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_cb378804c3d69df74f4b3103d9ad16f5p@chr12:6484832..6484841, +
3.29e-23FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_060b5c65f8c9d6f0cda90a0c74d65fcep@chr3:43532224..43532252, -
3.29e-23FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_060b5c65f8c9d6f0cda90a0c74d65fcep@chr3:43532224..43532252, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006853&oldid=3277864"