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UBERON:0007685

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Name:region of nephron tubule
Namespace:FANTOM
Xrefs:
links:
FMA:17692
Synonyms: "renal tubule region" EXACT [FMA:17692]
Comments:note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001231(nephron tubule),UBERON:0004810(nephron tubule epithelium)
part_of:UBERON:0001231(nephron tubule)



Children

is a:UBERON:0006853 (renal cortex tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007685 (region of nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_da593697acae46596f993cb1b1ea63b5p10@WWC1
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_da593697acae46596f993cb1b1ea63b5p10@WWC1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_1cb7fc90afd84bf055260aa031abcdb0p39@WWTR1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_1cb7fc90afd84bf055260aa031abcdb0p39@WWTR1
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_337ef0f82b375da9d3ed9d07d87b9591p1@ENST00000491264
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_337ef0f82b375da9d3ed9d07d87b9591p1@ENST00000491264
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_e2147b2db9a47f2d16fadcc02c351140p@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_e2147b2db9a47f2d16fadcc02c351140p@chr16:62055187..62055188, +
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_e2147b2db9a47f2d16fadcc02c351140p@chr16:61687533..61687551, -
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_e2147b2db9a47f2d16fadcc02c351140p@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_e2147b2db9a47f2d16fadcc02c351140p@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_e2147b2db9a47f2d16fadcc02c351140p@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_e2147b2db9a47f2d16fadcc02c351140p@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_e2147b2db9a47f2d16fadcc02c351140p@chr3:123667850..123667851, +
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_7b6ebff80b632aae6cd86472ae193c66p4@MEGF11
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_7b6ebff80b632aae6cd86472ae193c66p4@MEGF11
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_25134089287bbd8e8bb5f4345b61ad30p@chr9:114828174..114828179, +
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_25134089287bbd8e8bb5f4345b61ad30p@chr9:114828174..114828179, +
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_1d04b36bbcfd24f2fefcd2017fc0758bp@chr7:140227349..140227360, -
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_1d04b36bbcfd24f2fefcd2017fc0758bp@chr7:140227349..140227360, -
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_b16de202d6fe431b163c11b95aec6ac2p9@VARS2
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_b16de202d6fe431b163c11b95aec6ac2p9@VARS2
6.91e-39FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_a1dfa34ee4d1daba3affbe252a1471f2p11@VARS2
6.91e-39FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_a1dfa34ee4d1daba3affbe252a1471f2p11@VARS2
1.49e-38FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_7e20b8a8be7786b1c0cadc71cd4f775dp1@ENST00000534431
1.49e-38FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_7e20b8a8be7786b1c0cadc71cd4f775dp1@ENST00000534431
2.64e-38FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_9ae3534218038ea4ea1060cc47cec926p@chr7:53466339..53466356, -
2.64e-38FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_9ae3534218038ea4ea1060cc47cec926p@chr7:53466339..53466356, -
3.48e-38FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_e27a6b2093c1e634eb5626fc11345a4fp@chr17:18160552..18160565, -
3.48e-38FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_e27a6b2093c1e634eb5626fc11345a4fp@chr17:18160552..18160565, -
3.86e-38FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_0223d8252d3b228fb9ab214853c74b05p3@CLDN16
3.86e-38FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_0223d8252d3b228fb9ab214853c74b05p3@CLDN16
5.76e-38FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_c9aeff9808be2a9e4a8ff0878017baeep@chr1:1100457..1100470, +
5.76e-38FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_c9aeff9808be2a9e4a8ff0878017baeep@chr1:1100457..1100470, +
2.08e-36FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_beff0280354881675ed77085c74ac4d5p4@AIF1L
2.08e-36FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_beff0280354881675ed77085c74ac4d5p4@AIF1L
2.25e-35FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_1969ba2794944a79334eddc075739dbfp4@PAX2
2.25e-35FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_1969ba2794944a79334eddc075739dbfp4@PAX2
3.2e-35FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_1c75ca9bfd46f9618b0d7912e1537b69p18@SCNN1A
3.2e-35FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_1c75ca9bfd46f9618b0d7912e1537b69p18@SCNN1A
5.96e-34FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_df0ef25007a958b8e5720fb5949e22b6p@chr6:31023284..31023287, -
5.96e-34FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_df0ef25007a958b8e5720fb5949e22b6p@chr6:31023284..31023287, -
2.09e-33FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_5ba3b8b57bbb61b5656aee827f2549abp11@PAX8
2.09e-33FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_5ba3b8b57bbb61b5656aee827f2549abp11@PAX8
1.41e-32FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_e14b7effdffb203b59a4450c01d7fed0p2@C14orf105
1.41e-32FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_e14b7effdffb203b59a4450c01d7fed0p2@C14orf105
2.17e-32FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_fcf9d49a34a1258e2264da90c98303e9p1@CLDN16
2.17e-32FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_fcf9d49a34a1258e2264da90c98303e9p1@CLDN16
3.1e-30FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_09a5545ab769ff874aae9a1e8c8c5b55p@chr3:112127710..112127713, -
3.1e-30FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_09a5545ab769ff874aae9a1e8c8c5b55p@chr3:112127710..112127713, -
4.84e-30FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_b8ab2e23910909321137980359cb67b5p@chr20:49347516..49347535, -
4.84e-30FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_b8ab2e23910909321137980359cb67b5p@chr20:49347516..49347535, -
6.17e-30FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_3b09bdb04d0601ac9b8b61381344644ep5@VARS2
6.17e-30FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_3b09bdb04d0601ac9b8b61381344644ep5@VARS2
8.26e-30FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_af0e7cd68f6bf8cc9fc79b73ecc36e99p3@AIF1L
8.26e-30FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_af0e7cd68f6bf8cc9fc79b73ecc36e99p3@AIF1L
8.74e-30FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_f582dd0a6f2dad25205aa319ad30a410p4@CLDN16
8.74e-30FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_f582dd0a6f2dad25205aa319ad30a410p4@CLDN16
4.28e-29FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_65edd6dd9ecac08b4510627b7b2eb0f2p@chr7:7606139..7606151, -
4.28e-29FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_65edd6dd9ecac08b4510627b7b2eb0f2p@chr7:7606139..7606151, -
5.09e-29FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_ade8ed72dd47686c5975f92738cfc447p4@VARS2
5.09e-29FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_ade8ed72dd47686c5975f92738cfc447p4@VARS2
4.74e-28FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_644bcd60a5c30282e4d82132f0b1969cp7@FXYD2
4.74e-28FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_644bcd60a5c30282e4d82132f0b1969cp7@FXYD2
2.38e-27FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_468f68db37c6960e715973aa18401162p11@FXYD2
2.38e-27FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_468f68db37c6960e715973aa18401162p11@FXYD2
3.11e-27FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_00a172544b1d15f1b3647bca899489e2p2@ENST00000354541
3.11e-27FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_00a172544b1d15f1b3647bca899489e2p2@ENST00000354541
5.07e-27FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_6b3bb02a9837de36bbd4776c35cf2714p@chr1:17519128..17519138, +
5.07e-27FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_6b3bb02a9837de36bbd4776c35cf2714p@chr1:17519128..17519138, +
1.22e-26FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_acc767652170d1a13cca61ed8fc3a93ap5@ATP9B
1.22e-26FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_acc767652170d1a13cca61ed8fc3a93ap5@ATP9B
2.01e-25FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_26957461d0f3ddaf29c6beec6f7acd0dp@chr7:98453821..98453843, -
2.01e-25FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_26957461d0f3ddaf29c6beec6f7acd0dp@chr7:98453821..98453843, -
4.31e-25FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_4cadfe112d34f807ab8282ddbee0c567p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_4cadfe112d34f807ab8282ddbee0c567p7@AIF1L
4.31e-25FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_4cadfe112d34f807ab8282ddbee0c567p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_4cadfe112d34f807ab8282ddbee0c567p7@AIF1L
5.5e-25FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_32f7321c24594c1ec0c7a1452b8b0490p@chr2:189157368..189157381, -
5.5e-25FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_32f7321c24594c1ec0c7a1452b8b0490p@chr2:189157368..189157381, -
7.93e-25FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_4f25d3ba94522c1c9881ddcf56dd292ap@chr9:119741711..119741743, -
7.93e-25FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_4f25d3ba94522c1c9881ddcf56dd292ap@chr9:119741711..119741743, -
8.07e-25FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_22e911b632f0da6610e128bde96b0a41p8@KLK6
8.07e-25FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_22e911b632f0da6610e128bde96b0a41p8@KLK6
1.21e-24FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_444fd293424a82d7c40006ff67d50761p7@HOXA10
1.21e-24FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_444fd293424a82d7c40006ff67d50761p7@HOXA10
1.29e-24FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_35a74ae84aafa78910913d13035f7921p@chr20:6034241..6034256, -
1.29e-24FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_35a74ae84aafa78910913d13035f7921p@chr20:6034241..6034256, -
7.91e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_fd91614e982f6d70bd6b3eb5b918fdddp2@B3GALT5
7.91e-24FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_fd91614e982f6d70bd6b3eb5b918fdddp3@FXYD2
7.91e-24FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_fd91614e982f6d70bd6b3eb5b918fdddp3@FXYD2
7.91e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_fd91614e982f6d70bd6b3eb5b918fdddp2@B3GALT5
9.99e-24FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d29a5f9638116120f345a1aeb02ecdd8p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d29a5f9638116120f345a1aeb02ecdd8p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d29a5f9638116120f345a1aeb02ecdd8p3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d29a5f9638116120f345a1aeb02ecdd8p3@PAX2
3.27e-23FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_2595370376d24092b88d9591567d6441p@chr12:6484832..6484841, +
3.27e-23FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_2595370376d24092b88d9591567d6441p@chr12:6484832..6484841, +
3.29e-23FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_8992a41ce2e78594fb20308e3668dd69p@chr3:43532224..43532252, -
3.29e-23FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_8992a41ce2e78594fb20308e3668dd69p@chr3:43532224..43532252, -

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