UBERON:0000075: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0000075
|name=subdivision of skeletal system
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|xref=FMA:23879;;FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_Syste...") |
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|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:08, 15 June 2012
| Name: | subdivision of skeletal system | |
|---|---|---|
| Xrefs: |
| |
| Synonyms: |
"skeletal system part" RELATED [] "skeletal system subdivision" EXACT [FMA:85544] "skeleton part" RELATED [] "subdivision of skeleton" RELATED [] "subdivision of skeleton (in vivo)" EXACT [FMA:23879] | |
| Comments: | note we consciously merge the two FMA classes below | |
| Created by: | cjm | |
| Creation date: | 2009-07-30T03:53:53Z |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000480(anatomical group),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001434(skeletal system) |
Children
| is a: | UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system) |
|---|---|
| part of: | UBERON:0010912 (subdivision of skeleton) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
