UBERON:0002185: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002185
|name=bronchus
|namespace=
|def="A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
|xref=BTO:0001340;;EFO:0000932;...") |
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|part_of=UBERON:0002224;;UBERON:0007196 | |part_of=UBERON:0002224;;UBERON:0007196 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} |
Revision as of 17:15, 15 June 2012
Name: | bronchus | |
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Definition: | "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus] | |
Xrefs: |
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Synonyms: |
"bronchi" EXACT PLURAL [] "bronchial tissue" RELATED [BTO:0001340] "bronchial trunk" EXACT [] | |
Alt_id: | UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121 | |
Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000062(organ),UBERON:0004119(endoderm-derived structure),UBERON:0005178(thoracic cavity element) |
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part_of: | UBERON:0002224(thoracic cavity),UBERON:0007196(tracheobronchial tree) |
Children
part of: | UBERON:0002031 (epithelium of bronchus),CL:0002328 (bronchial epithelial cell),CL:0002598 (bronchial smooth muscle cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11511-119G8 (Bronchial Epithelial Cell, donor1)
- 11512-119G9 (Smooth Muscle Cells - Bronchial, donor1)
- 11591-120G7 (Bronchial Epithelial Cell, donor2)
- 11592-120G8 (Smooth Muscle Cells - Bronchial, donor2)
- 11672-122G7 (Bronchial Epithelial Cell, donor3)
- 11769-123I5 (Bronchial Epithelial Cell, donor7)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002185 (bronchus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data