Personal tools

UBERON:0000062: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0000467
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:110815
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:110815
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:24, 27 June 2012

Name:organ
Definition:"Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)]
Xrefs:
links:

EFO:0000634
FMA:67498
MA:0003001
ncithesaurus:Organ
NIF_GrossAnatomy:birnlex_4
OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA

OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
Comments:note that CARO does not include a generic 'organ' class, only simple and compound organ

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000061(anatomical structure)
part_of:UBERON:0000467(anatomical system)



Children

is a:UBERON:0000020 (sense organ),UBERON:0000057 (urethra),UBERON:0000094 (membrane organ),UBERON:0000171 (respiration organ),UBERON:0000955 (brain),UBERON:0000997 (mammalian vulva),UBERON:0001630 (muscle organ),UBERON:0001849 (membranous labyrinth),UBERON:0001987 (placenta),UBERON:0002097 (skin of body),UBERON:0002530 (gland),UBERON:0003103 (compound organ),UBERON:0003133 (reproductive organ),UBERON:0004177 (hemopoietic organ),UBERON:0004765 (skeletal element),UBERON:0005057 (immune organ),UBERON:0005174 (dorsal region element),UBERON:0005177 (trunk region element),UBERON:0005906 (serous sac),UBERON:0007196 (tracheobronchial tree),UBERON:0013765 (digestive system element)
part of:UBERON:0000064 (organ part),UBERON:0006876 (vasculature of organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000062 (organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results