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MCL coexpression mm9:2397: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!4.30e-13!32;CL:0002032!4.30e-13!32;CL:0000037!4.30e-13!32;CL:0000566!4.30e-13!32;CL:0000837!4.30e-13!32;CL:0002031!9.16e-10!25;CL:0000219!8.13e-09!54;CL:0002320!1.10e-08!46;CL:0000134!1.10e-08!46;CL:0002242!1.30e-08!16;CL:0000049!1.09e-07!19
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!5.11e-13!48;UBERON:0002405!5.11e-13!48;UBERON:0002390!8.77e-13!45;UBERON:0003061!8.77e-13!45;UBERON:0004177!8.92e-10!29;UBERON:0005057!8.92e-10!29;UBERON:0002384!1.10e-08!46;UBERON:0000072!3.02e-07!27;UBERON:0002370!4.08e-07!23;UBERON:0000974!4.08e-07!23;UBERON:0004807!4.08e-07!23;UBERON:0005058!4.08e-07!23;UBERON:0003351!4.08e-07!23;UBERON:0009113!4.08e-07!23;UBERON:0003295!4.08e-07!23;UBERON:0009722!4.08e-07!23;UBERON:0005562!4.08e-07!23;UBERON:0007690!4.08e-07!23;UBERON:0001007!7.16e-07!116;UBERON:0001555!7.16e-07!116;UBERON:0007026!7.16e-07!116;UBERON:0004119!9.64e-07!118;UBERON:0000925!9.64e-07!118;UBERON:0006595!9.64e-07!118
}}
}}

Revision as of 18:24, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr4:131901601..131901623,-p1@Rcc1
Mm9::chr8:86239090..86239103,+p3@Ddx39
Mm9::chr8:86239126..86239137,+p2@Ddx39
Mm9::chr8:86239138..86239187,+p1@Ddx39


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system5.11e-1348
immune system5.11e-1348
hematopoietic system8.77e-1345
blood island8.77e-1345
hemopoietic organ8.92e-1029
immune organ8.92e-1029
connective tissue1.10e-0846
segment of respiratory tract3.02e-0727
thymus4.08e-0723
neck4.08e-0723
respiratory system epithelium4.08e-0723
hemolymphoid system gland4.08e-0723
pharyngeal epithelium4.08e-0723
thymic region4.08e-0723
pharyngeal gland4.08e-0723
entire pharyngeal arch endoderm4.08e-0723
thymus primordium4.08e-0723
early pharyngeal endoderm4.08e-0723
digestive system7.16e-07116
digestive tract7.16e-07116
primitive gut7.16e-07116
endoderm-derived structure9.64e-07118
endoderm9.64e-07118
presumptive endoderm9.64e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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