Personal tools

MCL coexpression mm9:128: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 6: Line 6:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!7.26e-48!22;UBERON:0007499!7.26e-48!22;UBERON:0006925!7.26e-48!22;UBERON:0009497!7.26e-48!22;UBERON:0000015!7.26e-48!22;UBERON:0002423!7.26e-48!22;UBERON:0006235!7.26e-48!22;UBERON:0008835!7.26e-48!22;UBERON:0003894!7.26e-48!22;UBERON:0004161!7.26e-48!22;UBERON:0008836!7.26e-48!22;UBERON:0009854!1.02e-45!23;UBERON:0009856!1.02e-45!23;UBERON:0002365!6.11e-42!25;UBERON:0002330!6.11e-42!25;UBERON:0005256!1.38e-22!45;UBERON:0003914!1.49e-21!47;UBERON:0005172!1.32e-20!49;UBERON:0005173!1.32e-20!49;UBERON:0002417!1.32e-20!49;UBERON:0000916!1.32e-20!49;UBERON:0003929!3.60e-18!55;UBERON:0002368!1.64e-16!60;UBERON:0003104!3.27e-16!61;UBERON:0009142!3.27e-16!61;UBERON:0002530!4.18e-15!65;UBERON:0000490!7.54e-15!66;UBERON:0009569!7.54e-15!66;UBERON:0005911!3.99e-14!69;UBERON:0000949!1.84e-13!72;UBERON:0000466!4.16e-12!79;UBERON:0005177!4.16e-12!79;UBERON:0001041!6.21e-12!80;UBERON:0002100!2.12e-10!90;UBERON:0000025!8.33e-08!114;UBERON:0004921!8.33e-08!114;UBERON:0001007!1.23e-07!116;UBERON:0001555!1.23e-07!116;UBERON:0007026!1.23e-07!116;UBERON:0004119!1.79e-07!118;UBERON:0000925!1.79e-07!118;UBERON:0006595!1.79e-07!118;UBERON:0004111!3.65e-07!122
|ontology_enrichment_uberon=UBERON:0002107!7.26e-48!22;UBERON:0007499!7.26e-48!22;UBERON:0006925!7.26e-48!22;UBERON:0009497!7.26e-48!22;UBERON:0000015!7.26e-48!22;UBERON:0002423!7.26e-48!22;UBERON:0006235!7.26e-48!22;UBERON:0008835!7.26e-48!22;UBERON:0003894!7.26e-48!22;UBERON:0004161!7.26e-48!22;UBERON:0008836!7.26e-48!22;UBERON:0009854!1.02e-45!23;UBERON:0009856!1.02e-45!23;UBERON:0002365!6.11e-42!25;UBERON:0002330!6.11e-42!25;UBERON:0005256!1.38e-22!45;UBERON:0003914!1.49e-21!47;UBERON:0005172!1.32e-20!49;UBERON:0005173!1.32e-20!49;UBERON:0002417!1.32e-20!49;UBERON:0000916!1.32e-20!49;UBERON:0003929!3.60e-18!55;UBERON:0002368!1.64e-16!60;UBERON:0003104!3.27e-16!61;UBERON:0009142!3.27e-16!61;UBERON:0002530!4.18e-15!65;UBERON:0000490!7.54e-15!66;UBERON:0009569!7.54e-15!66;UBERON:0005911!3.99e-14!69;UBERON:0000949!1.84e-13!72;UBERON:0000466!4.16e-12!79;UBERON:0005177!4.16e-12!79;UBERON:0001041!6.21e-12!80;UBERON:0002100!2.12e-10!90;UBERON:0000025!8.33e-08!114;UBERON:0004921!8.33e-08!114;UBERON:0001007!1.23e-07!116;UBERON:0001555!1.23e-07!116;UBERON:0007026!1.23e-07!116;UBERON:0004119!1.79e-07!118;UBERON:0000925!1.79e-07!118;UBERON:0006595!1.79e-07!118;UBERON:0004111!3.65e-07!122
|tfbs_overrepresentation_for_novel_motifs=0.00785293,0.000182828,0.019944,0.785764,0.247272,0.607198,0.256954,0.204265,0.0621971,9.68729e-06,0.08653,0.415885,0.0130093,0.0491457,1.49541,0,0.175266,0.806936,0.0182601,0.182468,2.88813,0.267546,0.048763,1.57759,0.221039,0.0617243,0.275889,0.0681829,0.00641767,0.047722,0.0184653,0.274984,0.00659858,0.0539412,0.0302948,0.000156438,2.45812e-05,0.0381848,0.942029,0.0042215,0.835182,0.0624707,0.3263,2.12237,0.0027946,0.0122236,0.271948,0.174871,0.235466,0.050074,0.160264,0.195051,0.0637393,0.145596,0.154951,0.0522415,1.92855,0.0349728,0.110722,0.0513459,0.0726764,0.0810742,0.0443391,0.0383998,0.0573006,0.0495551,0.236767,0.50034,0.0709596,0.381663,0.00372426,1.28226,9.97899e-07,0.993232,2.54479e-06,0.00245722,0.0538408,0.256107,0.871651,0.146803,0.0995269,0.0512351,2.73535,0.121337,0.113496,1.41564e-11,1.59588,0.00734818,0.115912,0.640199,0.283929,0.115838,4.10034,2.62098,9.96454e-06,1.62795,0.380597,0.292198,0.0268199,0.100285,0.555712,0.27468,0.136524,0.160764,0.0412088,0.00324976,0.0589493,0.0248117,0.0369134,0.00275354,0.571573,0.137439,0.979933,0.0905152,0.288874,0.822193,5.7651e-06,0.223904,0.176411,0.183029,1.59506,0.134402,1.99417,0.104128,0.874385,0.239629,0.270742,0.0826653,0.235778,0.0099976,0.401987,0.104974,0.21683,0.156947,0.821308,2.04923,0.871396,0.27002,0.269707,0.979877,0.612119,0.673892,1.2355,0.286477,0.154494,0.0197372,0.513122,0.942288,1.46743,0.000484797,0.000474808,2.72871e-10,0.880195,0.000473708,1.13217,0.1926,0.19626,0.0764133,1.07408,0.00886564,0.276264,0.363457,0.515735,0.562414,0.629737,0.299855,0.117593,0.111412,2.2427e-07
}}
}}

Revision as of 17:50, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127321403..127321407,-p@chr10:127321403..127321407
-
Mm9::chr10:24635877..24635888,-p@chr10:24635877..24635888
-
Mm9::chr10:87355159..87355161,+p@chr10:87355159..87355161
+
Mm9::chr11:116035786..116035800,-p@chr11:116035786..116035800
-
Mm9::chr11:120353854..120353865,-p1@ENSMUST00000142520
Mm9::chr11:16678149..16678151,+p@chr11:16678149..16678151
+
Mm9::chr11:16678603..16678615,+p@chr11:16678603..16678615
+
Mm9::chr11:16746327..16746330,+p@chr11:16746327..16746330
+
Mm9::chr11:60036258..60036276,-p3@Srebf1
Mm9::chr12:105002005..105002050,-p@chr12:105002005..105002050
-
Mm9::chr12:105003025..105003036,-p@chr12:105003025..105003036
-
Mm9::chr12:105006094..105006117,-p@chr12:105006094..105006117
-
Mm9::chr12:105135274..105135305,-p@chr12:105135274..105135305
-
Mm9::chr12:105189466..105189477,-p@chr12:105189466..105189477
-
Mm9::chr12:105583523..105583538,+p@chr12:105583523..105583538
+
Mm9::chr12:105583554..105583564,+p@chr12:105583554..105583564
+
Mm9::chr12:105583571..105583582,+p@chr12:105583571..105583582
+
Mm9::chr12:105583621..105583627,+p@chr12:105583621..105583627
+
Mm9::chr14:41927501..41927512,+p@chr14:41927501..41927512
+
Mm9::chr16:16560464..16560475,-p17@Fgd4
Mm9::chr17:84536537..84536547,-p@chr17:84536537..84536547
-
Mm9::chr19:39303752..39303756,+p1@Cyp2c53-ps
Mm9::chr19:39361578..39361594,+p1@Cyp2c29
Mm9::chr19:39365241..39365270,+p@chr19:39365241..39365270
+
Mm9::chr19:39365321..39365337,+p@chr19:39365321..39365337
+
Mm9::chr19:39374556..39374560,+p@chr19:39374556..39374560
+
Mm9::chr19:39382098..39382114,+p@chr19:39382098..39382114
+
Mm9::chr19:39382184..39382199,+p@chr19:39382184..39382199
+
Mm9::chr19:39384135..39384157,+p@chr19:39384135..39384157
+
Mm9::chr19:39384266..39384278,+p@chr19:39384266..39384278
+
Mm9::chr19:39389970..39389978,+p@chr19:39389970..39389978
+
Mm9::chr19:39390004..39390011,+p@chr19:39390004..39390011
+
Mm9::chr19:39390029..39390037,+p@chr19:39390029..39390037
+
Mm9::chr19:39399423..39399432,+p@chr19:39399423..39399432
+
Mm9::chr19:39399495..39399528,+p@chr19:39399495..39399528
+
Mm9::chr19:39403641..39403676,+p@chr19:39403641..39403676
+
Mm9::chr19:39404877..39404882,+p@chr19:39404877..39404882
+
Mm9::chr19:40188154..40188166,+p@chr19:40188154..40188166
+
Mm9::chr19:40232386..40232425,-p@chr19:40232386..40232425
-
Mm9::chr19:40233958..40233962,-p@chr19:40233958..40233962
-
Mm9::chr19:40237604..40237608,-p@chr19:40237604..40237608
-
Mm9::chr19:40248162..40248172,-p@chr19:40248162..40248172
-
Mm9::chr19:40254883..40254895,-p@chr19:40254883..40254895
-
Mm9::chr19:44469333..44469347,-p@chr19:44469333..44469347
-
Mm9::chr1:133866485..133866489,+p@chr1:133866485..133866489
+
Mm9::chr1:173155793..173155841,+p@chr1:173155793..173155841
+
Mm9::chr1:173156291..173156313,+p@chr1:173156291..173156313
+
Mm9::chr1:21290067..21290086,-p@chr1:21290067..21290086
-
Mm9::chr1:36162547..36162577,+p@chr1:36162547..36162577
+
Mm9::chr1:67200081..67200086,+p@chr1:67200081..67200086
+
Mm9::chr1:67214884..67214893,+p@chr1:67214884..67214893
+
Mm9::chr1:67221081..67221092,+p@chr1:67221081..67221092
+
Mm9::chr1:67221240..67221249,+p@chr1:67221240..67221249
+
Mm9::chr1:67276977..67276999,+p1@uc007biz.1
Mm9::chr1:67277184..67277202,+p2@uc007biz.1
Mm9::chr1:99956884..99956886,+p@chr1:99956884..99956886
+
Mm9::chr2:103294557..103294580,-p@chr2:103294557..103294580
-
Mm9::chr2:103294606..103294623,-p@chr2:103294606..103294623
-
Mm9::chr2:103294672..103294691,-p@chr2:103294672..103294691
-
Mm9::chr2:172984520..172984544,+p@chr2:172984520..172984544
+
Mm9::chr2:72018279..72018285,+p@chr2:72018279..72018285
+
Mm9::chr2:72018496..72018514,+p@chr2:72018496..72018514
+
Mm9::chr2:72043702..72043703,+p@chr2:72043702..72043703
+
Mm9::chr3:100589647..100589679,+p@chr3:100589647..100589679
+
Mm9::chr3:107815588..107815627,-p@chr3:107815588..107815627
-
Mm9::chr3:82849892..82849895,-p@chr3:82849892..82849895
-
Mm9::chr4:115159672..115159722,-p@chr4:115159672..115159722
-
Mm9::chr4:49549504..49549515,-p@chr4:49549504..49549515
-
Mm9::chr4:49549517..49549528,-p@chr4:49549517..49549528
-
Mm9::chr4:59973531..59973540,-p1@Mup4
Mm9::chr5:146680566..146680591,-p@chr5:146680566..146680591
-
Mm9::chr5:146685077..146685108,-p@chr5:146685077..146685108
-
Mm9::chr5:87346055..87346060,-p@chr5:87346055..87346060
-
Mm9::chr5:87766144..87766156,-p@chr5:87766144..87766156
-
Mm9::chr5:90890774..90890801,-p@chr5:90890774..90890801
-
Mm9::chr5:90894978..90894996,-p@chr5:90894978..90894996
-
Mm9::chr5:90904290..90904338,+p@chr5:90904290..90904338
+
Mm9::chr6:113433578..113433612,+p3@Creld1
Mm9::chr6:85815802..85815804,-p@chr6:85815802..85815804
-
Mm9::chr7:104562106..104562111,-p@chr7:104562106..104562111
-
Mm9::chr7:147955971..147955981,+p@chr7:147955971..147955981
+
Mm9::chr7:27918263..27918287,+p@chr7:27918263..27918287
+
Mm9::chr7:74805802..74805809,+p@chr7:74805802..74805809
+
Mm9::chr8:112517816..112517828,+p@chr8:112517816..112517828
+
Mm9::chr8:112522826..112522841,+p@chr8:112522826..112522841
+
Mm9::chr8:36478444..36478478,-p@chr8:36478444..36478478
-
Mm9::chr8:42002936..42002947,+p@chr8:42002936..42002947
+
Mm9::chr8:95645482..95645485,-p@chr8:95645482..95645485
-
Mm9::chr8:95647096..95647110,-p@chr8:95647096..95647110
-
Mm9::chr9:46038153..46038162,-p@chr9:46038153..46038162
-
Mm9::chr9:46041332..46041361,-p@chr9:46041332..46041361
-
Mm9::chrM:5928..5943,-p@chrM:5928..5943
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell4.01e-195
endopolyploid cell4.01e-195
parenchymal cell4.01e-195
polyploid cell4.01e-195
hepatocyte4.01e-195
fibroblast5.34e-071
hepatic stellate cell5.34e-071

Uber Anatomy
Ontology termp-valuen
liver7.26e-4822
epithelial sac7.26e-4822
digestive gland7.26e-4822
epithelium of foregut-midgut junction7.26e-4822
anatomical boundary7.26e-4822
hepatobiliary system7.26e-4822
foregut-midgut junction7.26e-4822
hepatic diverticulum7.26e-4822
liver primordium7.26e-4822
septum transversum7.26e-4822
liver bud7.26e-4822
digestive tract diverticulum1.02e-4523
sac1.02e-4523
exocrine gland6.11e-4225
exocrine system6.11e-4225
trunk mesenchyme1.38e-2245
epithelial tube1.49e-2147
abdomen element1.32e-2049
abdominal segment element1.32e-2049
abdominal segment of trunk1.32e-2049
abdomen1.32e-2049
gut epithelium3.60e-1855
endocrine gland1.64e-1660
mesenchyme3.27e-1661
entire embryonic mesenchyme3.27e-1661
gland4.18e-1565
unilaminar epithelium7.54e-1566
subdivision of trunk7.54e-1566
endo-epithelium3.99e-1469
endocrine system1.84e-1372
immaterial anatomical entity4.16e-1279
trunk region element4.16e-1279
foregut6.21e-1280
trunk2.12e-1090
tube8.33e-08114
subdivision of digestive tract8.33e-08114
digestive system1.23e-07116
digestive tract1.23e-07116
primitive gut1.23e-07116
endoderm-derived structure1.79e-07118
endoderm1.79e-07118
presumptive endoderm1.79e-07118
anatomical conduit3.65e-07122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:128&oldid=2561348"