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MCL coexpression mm9:2438: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000466!5.74e-16!79;UBERON:0005177!8.18e-16!79;UBERON:0002100!9.68e-14!90;UBERON:0002365!7.24e-12!25;UBERON:0002330!7.24e-12!25;UBERON:0009569!1.16e-11!66;UBERON:0009854!2.20e-11!23;UBERON:0009856!2.20e-11!23;UBERON:0001007!7.38e-11!116;UBERON:0001555!7.38e-11!116;UBERON:0007026!7.38e-11!116;UBERON:0002107!7.64e-11!22;UBERON:0007499!7.64e-11!22;UBERON:0006925!7.64e-11!22;UBERON:0009497!7.64e-11!22;UBERON:0000015!7.64e-11!22;UBERON:0002423!7.64e-11!22;UBERON:0006235!7.64e-11!22;UBERON:0008835!7.64e-11!22;UBERON:0003894!7.64e-11!22;UBERON:0004161!7.64e-11!22;UBERON:0008836!7.64e-11!22;UBERON:0005911!9.26e-11!69;UBERON:0004921!9.90e-11!114;UBERON:0004119!5.04e-10!118;UBERON:0000925!5.04e-10!118;UBERON:0006595!5.04e-10!118;UBERON:0001041!1.51e-09!80;UBERON:0005256!7.17e-08!45;UBERON:0005153!8.28e-08!17;UBERON:0000949!1.07e-07!72;UBERON:0000464!4.12e-07!57;UBERON:0002048!4.72e-07!14;UBERON:0000117!4.72e-07!14;UBERON:0000171!4.72e-07!14;UBERON:0000170!4.72e-07!14;UBERON:0005597!4.72e-07!14;UBERON:0000118!4.72e-07!14;UBERON:0003914!4.89e-07!47;UBERON:0000475!6.22e-07!150
|ontology_enrichment_uberon=UBERON:0000466!5.74e-16!79;UBERON:0005177!8.18e-16!79;UBERON:0002100!9.68e-14!90;UBERON:0002365!7.24e-12!25;UBERON:0002330!7.24e-12!25;UBERON:0009569!1.16e-11!66;UBERON:0009854!2.20e-11!23;UBERON:0009856!2.20e-11!23;UBERON:0001007!7.38e-11!116;UBERON:0001555!7.38e-11!116;UBERON:0007026!7.38e-11!116;UBERON:0002107!7.64e-11!22;UBERON:0007499!7.64e-11!22;UBERON:0006925!7.64e-11!22;UBERON:0009497!7.64e-11!22;UBERON:0000015!7.64e-11!22;UBERON:0002423!7.64e-11!22;UBERON:0006235!7.64e-11!22;UBERON:0008835!7.64e-11!22;UBERON:0003894!7.64e-11!22;UBERON:0004161!7.64e-11!22;UBERON:0008836!7.64e-11!22;UBERON:0005911!9.26e-11!69;UBERON:0004921!9.90e-11!114;UBERON:0004119!5.04e-10!118;UBERON:0000925!5.04e-10!118;UBERON:0006595!5.04e-10!118;UBERON:0001041!1.51e-09!80;UBERON:0005256!7.17e-08!45;UBERON:0005153!8.28e-08!17;UBERON:0000949!1.07e-07!72;UBERON:0000464!4.12e-07!57;UBERON:0002048!4.72e-07!14;UBERON:0000117!4.72e-07!14;UBERON:0000171!4.72e-07!14;UBERON:0000170!4.72e-07!14;UBERON:0005597!4.72e-07!14;UBERON:0000118!4.72e-07!14;UBERON:0003914!4.89e-07!47;UBERON:0000475!6.22e-07!150
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.801438,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.381467,0.489964,0.755749,0.790506,0.37041,0.81685,0.502646,0,1.02248,0.473993,0.352304,0.24402,0.570433,0.197567,0.815872,0.481455,0.620553,0.846564,0.906602,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,0.318879,0.503207,1.54603,0.460474,0.786577,0.434783,0.40068,0.478558,0.717547,0.544696,0.504971,0.0986756,0.675898,0.938241,0.744678,0.49007,0.539131,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.98374,0.205546,1.32691,0.323563,0.834514,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,0.951203,1.20828,0.11855,0.129654,0.791209,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.367176,1.14445,0.938512,2.07187,3.01293,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,1.75347,0.580757,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.442329,0.692434,1.02384,0.456123,1.33244,0.970073,1.97652,0.925183,1.56496,1.09333,0.812403,1.13449,3.15635,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,1.08088,2.65107,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,1.57302,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,0.788782,2.03331
}}
}}

Revision as of 21:24, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:134780337..134780355,+p3@Crebl2
Mm9::chr8:95721631..95721658,-p1@Ces1d
Mm9::chr8:95721670..95721687,-p2@Ces1d
Mm9::chr8:95721698..95721708,-p3@Ces1d


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
immaterial anatomical entity5.74e-1679
trunk region element8.18e-1679
trunk9.68e-1490
exocrine gland7.24e-1225
exocrine system7.24e-1225
subdivision of trunk1.16e-1166
digestive tract diverticulum2.20e-1123
sac2.20e-1123
digestive system7.38e-11116
digestive tract7.38e-11116
primitive gut7.38e-11116
liver7.64e-1122
epithelial sac7.64e-1122
digestive gland7.64e-1122
epithelium of foregut-midgut junction7.64e-1122
anatomical boundary7.64e-1122
hepatobiliary system7.64e-1122
foregut-midgut junction7.64e-1122
hepatic diverticulum7.64e-1122
liver primordium7.64e-1122
septum transversum7.64e-1122
liver bud7.64e-1122
endo-epithelium9.26e-1169
subdivision of digestive tract9.90e-11114
endoderm-derived structure5.04e-10118
endoderm5.04e-10118
presumptive endoderm5.04e-10118
foregut1.51e-0980
trunk mesenchyme7.17e-0845
epithelial bud8.28e-0817
endocrine system1.07e-0772
anatomical space4.12e-0757
lung4.72e-0714
respiratory tube4.72e-0714
respiration organ4.72e-0714
pair of lungs4.72e-0714
lung primordium4.72e-0714
lung bud4.72e-0714
epithelial tube4.89e-0747
organism subdivision6.22e-07150


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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