FFCP PHASE1:Hg19::chr10:6779293..6779312,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-31bp_to_ENST00000417112_5end|coexpression_cluster_id=C3035|description=CAGE_peak_4_at_ENST00000417112_5end|id=chr10:6779293..6779312,+|ontology_enrichment_celltype=CL:0000066!2.86e-36!254;CL:0002076!5.06e-12!43;CL:0000076!8.20e-09!62;CL:0000223!2.16e-07!59;CL:0002251!5.23e-07!21;CL:0002368!8.91e-07!13|ontology_enrichment_celltype_v019=CL:0002076;4.23e-11;42!CL:0002621;1.01e-07;3!CL:0002368;3.44e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,1.07e-31,253;CL:0002076,1.58e-12,42;CL:0000223,4.66e-09,58;CL:0000076,2.18e-08,63;CL:0002621,1.20e-07,3;CL:0002368,3.79e-07,13|ontology_enrichment_development_v019=UBERON:0008947;9.30e-11;29|ontology_enrichment_disease=DOID:305!1.02e-15!106;DOID:1749!1.91e-13!14;DOID:0050687!1.65e-09!143|ontology_enrichment_disease_v019=DOID:1749;3.42e-20;14|ontology_enrichment_disease_v019_2=DOID:305,8.88e-23,106;DOID:1749,2.55e-20,14;DOID:0050687,3.54e-14,143;DOID:162,3.09e-08,235;DOID:14566,7.48e-08,239|ontology_enrichment_uberon=UBERON:0004119!2.56e-17!169;UBERON:0000925!2.56e-17!169;UBERON:0006595!2.56e-17!169;UBERON:0001004!1.16e-15!72;UBERON:0000065!6.23e-13!53;UBERON:0000072!1.21e-11!46;UBERON:0001007!5.84e-11!155;UBERON:0001555!5.84e-11!155;UBERON:0007026!5.84e-11!155;UBERON:0001737!3.54e-10!9;UBERON:0008947!4.99e-10!38;UBERON:0003258!4.99e-10!38;UBERON:0000077!6.98e-10!130;UBERON:0000064!1.00e-09!219;UBERON:0000481!7.14e-09!347;UBERON:0000063!2.28e-08!97;UBERON:0001557!1.11e-07!19;UBERON:0001444!1.92e-07!48;UBERON:0001041!2.56e-07!98;UBERON:0004921!4.00e-07!129;UBERON:0004185!4.00e-07!129;UBERON:0000062!4.63e-07!511;UBERON:0000161!8.45e-07!35|ontology_enrichment_uberon_v019=UBERON:0001737;1.38e-18;9!UBERON:0001557;1.38e-18;9!UBERON:0000065;5.51e-12;44!UBERON:0001004;6.35e-11;65!UBERON:0000072;1.13e-10;37!UBERON:0004807;5.30e-09;22!UBERON:0002294;3.68e-08;7!UBERON:0001173;3.68e-08;7!UBERON:0003729;4.61e-08;13!UBERON:0001949;1.01e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.72e-19,9;UBERON:0001004,2.09e-18,74;UBERON:0000065,1.04e-14,54;UBERON:0004119,6.70e-14,160;UBERON:0000925,6.70e-14,160;UBERON:0006595,6.70e-14,160;UBERON:0001557,2.82e-12,19;UBERON:0008947,6.64e-12,38;UBERON:0003258,6.64e-12,38;UBERON:0000072,1.35e-11,47;UBERON:0001007,3.73e-10,145;UBERON:0001555,3.73e-10,145;UBERON:0007026,3.73e-10,145;UBERON:0003729,4.63e-08,13;UBERON:0005153,4.64e-08,37;UBERON:0005157,4.74e-08,47;UBERON:0001949,1.20e-07,3;UBERON:0005911,3.62e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,1.96587149201207,0.697801167972428,1.09220686065086,0.263766978228454,0.37129905888014,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.958120975510189,0.251085279189606,0,0,0,0,0,0,1.83884244895785,1.50602959389125,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,4.73583874780305,5.93255108455087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82032272387605,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0.206105058476878,0,0,0.168776332241266,0,0,0,0,0,0,0,1.35282597214308,2.18196896472668,3.72845974005705,0.121973706129595,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,1.8929088006375,1.68584690078102,1.92808823906786,2.20587945464788,1.96091499683166,2.60997681022206,1.21348177344148,2.74710051175484,1.53898862778556,0,0,0,0,0,0,0,0,0,0.343135620597051,0.439001141634502,3.37205259772859,4.72486170334665,2.12953423864618,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,2.81201501960331,0.503946384596579,0.992425680696705,2.50763863567975,5.52204483176528,2.68367875415648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0,0.791951872933429,0.602878754119172,0,0.599837947092342,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.813795071099207,0,0,0,0,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0.909382714338778,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.00253235151642,1.19705285616665,0,0,0.131124414959424,2.70719767744447,1.5403067420883,2.35304930753057,0,0.316654886678627,0,0,0,0,0.270946437543853,0,1.52925763827023,0.831076008928724,0.895499018888713,0,0,0.769350375349168,0,0,0.103041011647722,0,0,0,1.95018073810956,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,1.15699440752685,1.34533047155574,1.14851441245126,1.4162089319777,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0,0.54907405947211,0.471249609382746,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0.379473173765715,3.14941248220485,0.577332676353072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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-31bp_to_ENST00000417112_5end | |||
|coexpression_cluster_id=C3035 | |||
|description=CAGE_peak_4_at_ENST00000417112_5end | |||
|id=chr10:6779293..6779312,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.86e-36!254;CL:0002076!5.06e-12!43;CL:0000076!8.20e-09!62;CL:0000223!2.16e-07!59;CL:0002251!5.23e-07!21;CL:0002368!8.91e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.23e-11;42!CL:0002621;1.01e-07;3!CL:0002368;3.44e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.07e-31,253;CL:0002076,1.58e-12,42;CL:0000223,4.66e-09,58;CL:0000076,2.18e-08,63;CL:0002621,1.20e-07,3;CL:0002368,3.79e-07,13 | |||
|ontology_enrichment_development_v019=UBERON:0008947;9.30e-11;29 | |||
|ontology_enrichment_disease=DOID:305!1.02e-15!106;DOID:1749!1.91e-13!14;DOID:0050687!1.65e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.42e-20;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.88e-23,106;DOID:1749,2.55e-20,14;DOID:0050687,3.54e-14,143;DOID:162,3.09e-08,235;DOID:14566,7.48e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.56e-17!169;UBERON:0000925!2.56e-17!169;UBERON:0006595!2.56e-17!169;UBERON:0001004!1.16e-15!72;UBERON:0000065!6.23e-13!53;UBERON:0000072!1.21e-11!46;UBERON:0001007!5.84e-11!155;UBERON:0001555!5.84e-11!155;UBERON:0007026!5.84e-11!155;UBERON:0001737!3.54e-10!9;UBERON:0008947!4.99e-10!38;UBERON:0003258!4.99e-10!38;UBERON:0000077!6.98e-10!130;UBERON:0000064!1.00e-09!219;UBERON:0000481!7.14e-09!347;UBERON:0000063!2.28e-08!97;UBERON:0001557!1.11e-07!19;UBERON:0001444!1.92e-07!48;UBERON:0001041!2.56e-07!98;UBERON:0004921!4.00e-07!129;UBERON:0004185!4.00e-07!129;UBERON:0000062!4.63e-07!511;UBERON:0000161!8.45e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.38e-18;9!UBERON:0001557;1.38e-18;9!UBERON:0000065;5.51e-12;44!UBERON:0001004;6.35e-11;65!UBERON:0000072;1.13e-10;37!UBERON:0004807;5.30e-09;22!UBERON:0002294;3.68e-08;7!UBERON:0001173;3.68e-08;7!UBERON:0003729;4.61e-08;13!UBERON:0001949;1.01e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.72e-19,9;UBERON:0001004,2.09e-18,74;UBERON:0000065,1.04e-14,54;UBERON:0004119,6.70e-14,160;UBERON:0000925,6.70e-14,160;UBERON:0006595,6.70e-14,160;UBERON:0001557,2.82e-12,19;UBERON:0008947,6.64e-12,38;UBERON:0003258,6.64e-12,38;UBERON:0000072,1.35e-11,47;UBERON:0001007,3.73e-10,145;UBERON:0001555,3.73e-10,145;UBERON:0007026,3.73e-10,145;UBERON:0003729,4.63e-08,13;UBERON:0005153,4.64e-08,37;UBERON:0005157,4.74e-08,47;UBERON:0001949,1.20e-07,3;UBERON:0005911,3.62e-07,82 | |||
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| |||
|short_description=p4@ENST00000417112 | |||
}} |
Revision as of 14:01, 10 September 2013
Short description: | p4@ENST00000417112 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ENST00000417112_5end |
Coexpression cluster: | C3035_prostate_signet_epidermoid_Keratinocyte_giant_Mammary_mucinous |
Association with transcript: | -31bp_to_ENST00000417112_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.07e-31 | 253 |
endo-epithelial cell | 1.58e-12 | 42 |
endodermal cell | 4.66e-09 | 58 |
squamous epithelial cell | 2.18e-08 | 63 |
gingival epithelial cell | 1.20e-07 | 3 |
respiratory epithelial cell | 3.79e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.72e-19 | 9 |
respiratory system | 2.09e-18 | 74 |
respiratory tract | 1.04e-14 | 54 |
endoderm-derived structure | 6.70e-14 | 160 |
endoderm | 6.70e-14 | 160 |
presumptive endoderm | 6.70e-14 | 160 |
upper respiratory tract | 2.82e-12 | 19 |
respiratory primordium | 6.64e-12 | 38 |
endoderm of foregut | 6.64e-12 | 38 |
segment of respiratory tract | 1.35e-11 | 47 |
digestive system | 3.73e-10 | 145 |
digestive tract | 3.73e-10 | 145 |
primitive gut | 3.73e-10 | 145 |
mouth mucosa | 4.63e-08 | 13 |
epithelial bud | 4.64e-08 | 37 |
epithelial fold | 4.74e-08 | 47 |
gingival epithelium | 1.20e-07 | 3 |
endo-epithelium | 3.62e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.88e-23 | 106 |
squamous cell carcinoma | 2.55e-20 | 14 |
cell type cancer | 3.54e-14 | 143 |
cancer | 3.09e-08 | 235 |
disease of cellular proliferation | 7.48e-08 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.