FFCP PHASE1:Hg19::chr12:93399748..93399757,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C228|description=CAGE_peak_at_chr12:93399748..93399757,+|id=chr12:93399748..93399757,+|ontology_enrichment_celltype=CL:0002563!3.68e-23!4;CL:0002322!2.52e-18!5;CL:0000181!3.08e-17!12;CL:0000417!3.08e-17!12;CL:0000668!3.08e-17!12;CL:0000414!3.08e-17!12;CL:0000412!3.08e-17!12;CL:0000182!3.08e-17!12;CL:0000223!1.51e-13!59;CL:0002253!1.48e-12!2;CL:0000148!1.15e-09!10;CL:0000541!1.15e-09!10;CL:0002231!8.96e-09!3;CL:0000147!3.66e-07!14|ontology_enrichment_celltype_v019=CL:0002253;4.32e-26;2!CL:0002231;9.45e-18;3!CL:0000182;1.71e-17;12!CL:0002563;8.81e-14;4|ontology_enrichment_celltype_v019_2=CL:0002253,4.32e-26,2;CL:0002231,8.00e-18,3;CL:0000182,1.85e-17,12;CL:0000223,1.72e-14,58;CL:0002563,8.82e-14,4|ontology_enrichment_development_v019=UBERON:0004161;5.63e-19;11!UBERON:0009497;3.07e-16;13!UBERON:0003104;6.15e-15;31!CL:0000223;8.82e-09;58!UBERON:0001041;1.21e-07;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001242!3.68e-23!4;UBERON:0001262!3.68e-23!4;UBERON:0004786!3.68e-23!4;UBERON:0004808!3.68e-23!4;UBERON:0001277!3.68e-23!4;UBERON:0003350!9.47e-19!5;UBERON:0003929!8.50e-15!54;UBERON:0002107!3.80e-11!19;UBERON:0006925!3.80e-11!19;UBERON:0008836!3.80e-11!19;UBERON:0000485!7.22e-11!9;UBERON:0005911!9.60e-10!82;UBERON:0008835!1.03e-09!22;UBERON:0003894!1.03e-09!22;UBERON:0009854!2.55e-09!23;UBERON:0007499!1.27e-08!25;UBERON:0009497!1.27e-08!25;UBERON:0000015!1.27e-08!25;UBERON:0002423!1.27e-08!25;UBERON:0006235!1.27e-08!25;UBERON:0004161!1.27e-08!25;UBERON:0001723!1.30e-08!3;UBERON:0001033!1.30e-08!3;UBERON:0010056!1.30e-08!3;UBERON:0000344!2.20e-08!12;UBERON:0000060!2.20e-08!12;UBERON:0005057!2.59e-08!26;UBERON:0009856!2.59e-08!26;UBERON:0004921!3.33e-08!129;UBERON:0004185!3.33e-08!129;UBERON:0002365!4.58e-07!31;UBERON:0002330!4.58e-07!31;UBERON:0001052!6.50e-07!4;UBERON:0001007!8.56e-07!155;UBERON:0001555!8.56e-07!155;UBERON:0007026!8.56e-07!155|ontology_enrichment_uberon_v019=UBERON:0001052;8.81e-14;4!UBERON:0001242;8.81e-14;4!UBERON:0001262;8.81e-14;4!UBERON:0004786;8.81e-14;4!UBERON:0004808;8.81e-14;4!UBERON:0001277;8.81e-14;4!UBERON:0002107;1.81e-11;19!UBERON:0006925;1.81e-11;19!UBERON:0004907;2.66e-11;5!UBERON:0002423;5.71e-09;25!UBERON:0000485;1.89e-08;7!UBERON:0003929;1.89e-08;7!UBERON:0003350;1.49e-07;8!UBERON:0002368;3.69e-07;33!UBERON:0001155;7.48e-07;9!UBERON:0002530;7.78e-07;57|ontology_enrichment_uberon_v019_2=UBERON:0003929,1.70e-15,54;UBERON:0001052,8.82e-14,4;UBERON:0001242,8.82e-14,4;UBERON:0001262,8.82e-14,4;UBERON:0004786,8.82e-14,4;UBERON:0004808,8.82e-14,4;UBERON:0001277,8.82e-14,4;UBERON:0001046,1.55e-11,19;UBERON:0002107,1.91e-11,19;UBERON:0006925,1.91e-11,19;UBERON:0008836,1.91e-11,19;UBERON:0004907,2.66e-11,5;UBERON:0005911,1.66e-10,82;UBERON:0008835,4.96e-10,22;UBERON:0003894,4.96e-10,22;UBERON:0009854,1.22e-09,23;UBERON:0007499,5.95e-09,25;UBERON:0009497,5.95e-09,25;UBERON:0000015,5.95e-09,25;UBERON:0002423,5.95e-09,25;UBERON:0006235,5.95e-09,25;UBERON:0004161,5.95e-09,25;UBERON:0009856,1.20e-08,26;UBERON:0002530,1.98e-08,59;UBERON:0003350,1.49e-07,8;UBERON:0004921,1.75e-07,118;UBERON:0002365,2.05e-07,31;UBERON:0002330,2.05e-07,31;UBERON:0001155,7.48e-07,9;UBERON:0000485,7.48e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26164914294305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551482276150566,1.07140615895516,1.14586024552114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:93399748..93399757,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C228 | |||
|description=CAGE_peak_at_chr12:93399748..93399757,+ | |||
|id=chr12:93399748..93399757,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.68e-23!4;CL:0002322!2.52e-18!5;CL:0000181!3.08e-17!12;CL:0000417!3.08e-17!12;CL:0000668!3.08e-17!12;CL:0000414!3.08e-17!12;CL:0000412!3.08e-17!12;CL:0000182!3.08e-17!12;CL:0000223!1.51e-13!59;CL:0002253!1.48e-12!2;CL:0000148!1.15e-09!10;CL:0000541!1.15e-09!10;CL:0002231!8.96e-09!3;CL:0000147!3.66e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002253;4.32e-26;2!CL:0002231;9.45e-18;3!CL:0000182;1.71e-17;12!CL:0002563;8.81e-14;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,4.32e-26,2;CL:0002231,8.00e-18,3;CL:0000182,1.85e-17,12;CL:0000223,1.72e-14,58;CL:0002563,8.82e-14,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.63e-19;11!UBERON:0009497;3.07e-16;13!UBERON:0003104;6.15e-15;31!CL:0000223;8.82e-09;58!UBERON:0001041;1.21e-07;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001242!3.68e-23!4;UBERON:0001262!3.68e-23!4;UBERON:0004786!3.68e-23!4;UBERON:0004808!3.68e-23!4;UBERON:0001277!3.68e-23!4;UBERON:0003350!9.47e-19!5;UBERON:0003929!8.50e-15!54;UBERON:0002107!3.80e-11!19;UBERON:0006925!3.80e-11!19;UBERON:0008836!3.80e-11!19;UBERON:0000485!7.22e-11!9;UBERON:0005911!9.60e-10!82;UBERON:0008835!1.03e-09!22;UBERON:0003894!1.03e-09!22;UBERON:0009854!2.55e-09!23;UBERON:0007499!1.27e-08!25;UBERON:0009497!1.27e-08!25;UBERON:0000015!1.27e-08!25;UBERON:0002423!1.27e-08!25;UBERON:0006235!1.27e-08!25;UBERON:0004161!1.27e-08!25;UBERON:0001723!1.30e-08!3;UBERON:0001033!1.30e-08!3;UBERON:0010056!1.30e-08!3;UBERON:0000344!2.20e-08!12;UBERON:0000060!2.20e-08!12;UBERON:0005057!2.59e-08!26;UBERON:0009856!2.59e-08!26;UBERON:0004921!3.33e-08!129;UBERON:0004185!3.33e-08!129;UBERON:0002365!4.58e-07!31;UBERON:0002330!4.58e-07!31;UBERON:0001052!6.50e-07!4;UBERON:0001007!8.56e-07!155;UBERON:0001555!8.56e-07!155;UBERON:0007026!8.56e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001052;8.81e-14;4!UBERON:0001242;8.81e-14;4!UBERON:0001262;8.81e-14;4!UBERON:0004786;8.81e-14;4!UBERON:0004808;8.81e-14;4!UBERON:0001277;8.81e-14;4!UBERON:0002107;1.81e-11;19!UBERON:0006925;1.81e-11;19!UBERON:0004907;2.66e-11;5!UBERON:0002423;5.71e-09;25!UBERON:0000485;1.89e-08;7!UBERON:0003929;1.89e-08;7!UBERON:0003350;1.49e-07;8!UBERON:0002368;3.69e-07;33!UBERON:0001155;7.48e-07;9!UBERON:0002530;7.78e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003929,1.70e-15,54;UBERON:0001052,8.82e-14,4;UBERON:0001242,8.82e-14,4;UBERON:0001262,8.82e-14,4;UBERON:0004786,8.82e-14,4;UBERON:0004808,8.82e-14,4;UBERON:0001277,8.82e-14,4;UBERON:0001046,1.55e-11,19;UBERON:0002107,1.91e-11,19;UBERON:0006925,1.91e-11,19;UBERON:0008836,1.91e-11,19;UBERON:0004907,2.66e-11,5;UBERON:0005911,1.66e-10,82;UBERON:0008835,4.96e-10,22;UBERON:0003894,4.96e-10,22;UBERON:0009854,1.22e-09,23;UBERON:0007499,5.95e-09,25;UBERON:0009497,5.95e-09,25;UBERON:0000015,5.95e-09,25;UBERON:0002423,5.95e-09,25;UBERON:0006235,5.95e-09,25;UBERON:0004161,5.95e-09,25;UBERON:0009856,1.20e-08,26;UBERON:0002530,1.98e-08,59;UBERON:0003350,1.49e-07,8;UBERON:0004921,1.75e-07,118;UBERON:0002365,2.05e-07,31;UBERON:0002330,2.05e-07,31;UBERON:0001155,7.48e-07,9;UBERON:0000485,7.48e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26164914294305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551482276150566,1.07140615895516,1.14586024552114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:93399748..93399757,+ | |||
}} |
Revision as of 01:01, 11 September 2013
Short description: | p@chr12:93399748..93399757, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:93399748..93399757, + |
Coexpression cluster: | C228_colon_Intestinal_Prostate_hepatoblastoma_hepatocellular_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 4.32e-26 | 2 |
epithelial cell of prostate | 8.00e-18 | 3 |
hepatocyte | 1.85e-17 | 12 |
endodermal cell | 1.72e-14 | 58 |
intestinal epithelial cell | 8.82e-14 | 4 |
Ontology term | p-value | n |
---|---|---|
gut epithelium | 1.70e-15 | 54 |
rectum | 8.82e-14 | 4 |
intestinal mucosa | 8.82e-14 | 4 |
wall of intestine | 8.82e-14 | 4 |
gastrointestinal system mucosa | 8.82e-14 | 4 |
gastrointestinal system epithelium | 8.82e-14 | 4 |
intestinal epithelium | 8.82e-14 | 4 |
hindgut | 1.55e-11 | 19 |
liver | 1.91e-11 | 19 |
digestive gland | 1.91e-11 | 19 |
liver bud | 1.91e-11 | 19 |
lower digestive tract | 2.66e-11 | 5 |
endo-epithelium | 1.66e-10 | 82 |
hepatic diverticulum | 4.96e-10 | 22 |
liver primordium | 4.96e-10 | 22 |
digestive tract diverticulum | 1.22e-09 | 23 |
epithelial sac | 5.95e-09 | 25 |
epithelium of foregut-midgut junction | 5.95e-09 | 25 |
anatomical boundary | 5.95e-09 | 25 |
hepatobiliary system | 5.95e-09 | 25 |
foregut-midgut junction | 5.95e-09 | 25 |
septum transversum | 5.95e-09 | 25 |
sac | 1.20e-08 | 26 |
gland | 1.98e-08 | 59 |
epithelium of mucosa | 1.49e-07 | 8 |
subdivision of digestive tract | 1.75e-07 | 118 |
exocrine gland | 2.05e-07 | 31 |
exocrine system | 2.05e-07 | 31 |
colon | 7.48e-07 | 9 |
simple columnar epithelium | 7.48e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.