FFCP PHASE1:Hg19::chr17:73717223..73717239,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3691|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6158|TSSclassifier=W|UniProt=P16144,A0AVL6|association_with_transcript=-276bp_to_ENST00000200181,ENST00000339591,NM_000213,NM_001005731,uc002jpg.2,uc002jph.2_5end|coexpression_cluster_id=C4|description=CAGE_peak_6_at_ITGB4_5end|id=chr17:73717223..73717239,+|ontology_enrichment_celltype=CL:0000128!1.18e-07!7;CL:0000126!1.18e-07!7;CL:0000127!1.18e-07!7;CL:0002453!1.18e-07!7|ontology_enrichment_celltype_v019=CL:0000128;1.05e-08;7!CL:0000126;1.05e-08;7!CL:0000127;1.05e-08;7!CL:0002603;4.58e-08;3|ontology_enrichment_celltype_v019_2=CL:0000128,7.68e-09,7;CL:0000126,7.68e-09,7;CL:0000127,7.68e-09,7;CL:0002453,7.68e-09,7;CL:0002603,3.03e-08,3|ontology_enrichment_development_v019=UBERON:0006601;1.79e-16;82!UBERON:0006241;4.32e-09;3!UBERON:0003057;4.32e-09;3!UBERON:0006215;4.92e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003075!5.73e-54!86;UBERON:0007284!5.73e-54!86;UBERON:0007023!2.21e-53!115;UBERON:0001049!3.10e-52!57;UBERON:0005068!3.10e-52!57;UBERON:0006241!3.10e-52!57;UBERON:0007135!3.10e-52!57;UBERON:0005743!6.33e-51!86;UBERON:0002346!2.76e-50!90;UBERON:0001017!1.55e-47!82;UBERON:0000033!4.15e-47!123;UBERON:0000955!2.92e-46!69;UBERON:0006238!2.92e-46!69;UBERON:0002616!3.21e-46!59;UBERON:0000153!1.20e-45!129;UBERON:0007811!1.20e-45!129;UBERON:0000073!3.05e-45!94;UBERON:0001016!3.05e-45!94;UBERON:0004121!4.91e-44!169;UBERON:0000924!3.63e-42!173;UBERON:0006601!3.63e-42!173;UBERON:0002780!5.48e-37!41;UBERON:0001890!5.48e-37!41;UBERON:0006240!5.48e-37!41;UBERON:0003056!7.16e-36!61;UBERON:0003080!9.94e-36!42;UBERON:0002020!4.27e-31!34;UBERON:0003528!4.27e-31!34;UBERON:0001893!4.63e-31!34;UBERON:0002791!4.06e-30!33;UBERON:0001869!6.44e-29!32;UBERON:0000956!1.18e-21!25;UBERON:0000203!1.18e-21!25;UBERON:0000475!5.16e-19!365;UBERON:0002619!6.58e-19!22;UBERON:0000481!9.28e-18!347;UBERON:0000483!1.00e-17!309;UBERON:0000119!1.12e-17!312;UBERON:0003076!2.62e-17!15;UBERON:0003057!2.62e-17!15;UBERON:0001950!8.79e-17!20;UBERON:0000477!2.34e-16!286;UBERON:0000062!1.52e-15!511;UBERON:0004111!2.10e-15!241;UBERON:0004732!6.86e-15!13;UBERON:0000064!2.53e-14!219;UBERON:0004733!6.62e-14!12;UBERON:0002028!6.62e-14!12;UBERON:0007277!6.62e-14!12;UBERON:0000467!1.47e-13!625;UBERON:0000922!1.66e-13!612;UBERON:0000480!1.89e-13!626;UBERON:0000923!2.73e-13!604;UBERON:0005291!2.73e-13!604;UBERON:0006598!2.73e-13!604;UBERON:0002532!2.73e-13!604;UBERON:0002050!3.51e-13!605;UBERON:0005423!3.51e-13!605;UBERON:0000025!7.78e-13!194;UBERON:0000468!1.78e-12!659;UBERON:0002420!4.87e-11!9;UBERON:0007245!4.87e-11!9;UBERON:0010009!4.87e-11!9;UBERON:0010011!4.87e-11!9;UBERON:0000454!4.87e-11!9;UBERON:0002308!5.84e-11!9;UBERON:0000125!5.84e-11!9;UBERON:0002680!1.78e-10!9;UBERON:0001895!1.78e-10!9;UBERON:0010092!1.78e-10!9;UBERON:0009663!7.25e-09!7;UBERON:0002298!1.28e-07!8;UBERON:0000200!1.74e-07!6;UBERON:0002037!1.74e-07!6;UBERON:0006215!1.74e-07!6;UBERON:0001894!2.90e-07!7;UBERON:0006222!2.90e-07!7;UBERON:0000349!6.14e-07!5;UBERON:0001032!7.96e-07!24;UBERON:0004456!7.96e-07!24|ontology_enrichment_uberon_v019=UBERON:0001893;7.95e-50;34!UBERON:0003528;1.33e-48;34!UBERON:0002020;1.33e-48;34!UBERON:0000073;1.83e-48;53!UBERON:0002616;1.83e-48;53!UBERON:0002791;3.61e-47;32!UBERON:0001869;3.76e-47;32!UBERON:0002780;3.29e-43;41!UBERON:0001890;3.29e-43;41!UBERON:0000956;4.45e-37;25!UBERON:0000203;4.45e-37;25!UBERON:0002619;1.40e-34;22!UBERON:0000955;3.49e-31;68!UBERON:0004732;2.24e-30;13!UBERON:0001017;2.37e-30;75!UBERON:0001950;4.68e-30;20!UBERON:0004733;2.67e-28;12!UBERON:0002028;2.67e-28;12!UBERON:0001016;2.22e-25;83!UBERON:0002420;5.46e-22;9!UBERON:0007245;5.46e-22;9!UBERON:0010009;5.46e-22;9!UBERON:0010011;5.46e-22;9!UBERON:0000454;5.46e-22;9!UBERON:0000125;6.41e-22;9!UBERON:0002308;6.41e-22;9!UBERON:0002680;8.15e-21;9!UBERON:0001895;8.15e-21;9!UBERON:0009663;2.52e-17;7!UBERON:0002298;1.41e-15;6!UBERON:0007023;2.31e-15;114!UBERON:0000200;1.65e-14;6!UBERON:0002037;2.00e-14;6!UBERON:0000349;3.87e-13;5!UBERON:0000369;1.27e-10;4!UBERON:0002435;1.27e-10;4!UBERON:0000204;1.27e-10;4!UBERON:0011216;5.32e-10;132!UBERON:0010314;1.76e-09;132!UBERON:0001871;3.24e-09;6!UBERON:0001896;3.33e-09;3!UBERON:0005290;3.33e-09;3!UBERON:0002240;4.32e-09;3!UBERON:0005174;4.32e-09;3!UBERON:0001137;4.32e-09;3!UBERON:0005383;1.49e-08;3!UBERON:0005382;1.49e-08;3!UBERON:0000988;4.41e-08;3!UBERON:0001872;4.43e-08;5!UBERON:0002021;4.73e-08;5!UBERON:0001870;6.42e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.51e-96,56;UBERON:0005068,7.51e-96,56;UBERON:0006241,7.51e-96,56;UBERON:0007135,7.51e-96,56;UBERON:0000073,3.60e-88,53;UBERON:0002616,3.60e-88,53;UBERON:0003075,7.69e-85,82;UBERON:0007284,7.69e-85,82;UBERON:0002346,3.25e-80,86;UBERON:0001017,4.60e-76,81;UBERON:0000955,9.98e-72,68;UBERON:0006238,9.98e-72,68;UBERON:0001016,5.43e-70,89;UBERON:0010371,1.18e-68,104;UBERO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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3691 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6158 | |||
|TSSclassifier=W | |||
|UniProt=P16144,A0AVL6 | |||
|association_with_transcript=-276bp_to_ENST00000200181,ENST00000339591,NM_000213,NM_001005731,uc002jpg.2,uc002jph.2_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_6_at_ITGB4_5end | |||
|id=chr17:73717223..73717239,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.18e-07!7;CL:0000126!1.18e-07!7;CL:0000127!1.18e-07!7;CL:0002453!1.18e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000128;1.05e-08;7!CL:0000126;1.05e-08;7!CL:0000127;1.05e-08;7!CL:0002603;4.58e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,7.68e-09,7;CL:0000126,7.68e-09,7;CL:0000127,7.68e-09,7;CL:0002453,7.68e-09,7;CL:0002603,3.03e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.79e-16;82!UBERON:0006241;4.32e-09;3!UBERON:0003057;4.32e-09;3!UBERON:0006215;4.92e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p6@ITGB4 | |||
}} |
Revision as of 15:41, 11 September 2013
Short description: | p6@ITGB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_ITGB4_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | -276bp_to_ENST00000200181, ENST00000339591, NM_000213, NM_001005731, uc002jpg.2, uc002jph.2_5end |
EntrezGene: | ITGB4 |
HGNC: | 6158 |
UniProt: | P16144A0AVL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 7.68e-09 | 7 |
macroglial cell | 7.68e-09 | 7 |
astrocyte | 7.68e-09 | 7 |
oligodendrocyte precursor cell | 7.68e-09 | 7 |
astrocyte of the cerebellum | 3.03e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.