FFCP PHASE1:Hg19::chr19:48344846..48344850,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1736|description=CAGE_peak_at_chr19:48344846..48344850,+|id=chr19:48344846..48344850,+|ontology_enrichment_celltype=CL:0002586!1.49e-16!3;CL:0000149!1.16e-12!4;CL:0000147!5.06e-08!14|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;9.77e-45;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5409;1.70e-09;4|ontology_enrichment_disease_v019_2=DOID:5409,1.70e-09,4|ontology_enrichment_uberon=UBERON:0000966!4.45e-38!5;UBERON:0005388!4.45e-38!5;UBERON:0001802!4.45e-38!5;UBERON:0001905!5.58e-25!2;UBERON:0002757!5.58e-25!2;UBERON:0010134!5.58e-25!2;UBERON:0002784!5.58e-25!2;UBERON:0005408!5.58e-25!2;UBERON:0001899!5.58e-25!2;UBERON:0000970!6.63e-21!20;UBERON:0002104!6.75e-20!21;UBERON:0000020!3.83e-18!23;UBERON:0001032!2.24e-17!24;UBERON:0004456!2.24e-17!24;UBERON:0001781!1.49e-16!3;UBERON:0001782!1.49e-16!3;UBERON:0005424!1.49e-16!3;UBERON:0000019!1.98e-15!19;UBERON:0000047!1.98e-15!19;UBERON:0004088!1.98e-15!19;UBERON:0003072!1.98e-15!19;UBERON:0003071!1.98e-15!19;UBERON:0004128!1.98e-15!19;UBERON:0001456!5.88e-14!21;UBERON:0002134!3.76e-13!1;UBERON:0005208!3.76e-13!1;UBERON:0005946!3.76e-13!1;UBERON:0005965!3.76e-13!1;UBERON:0002078!3.76e-13!1;UBERON:0003296!5.39e-13!4;UBERON:0010133!5.39e-13!4;UBERON:0002038!6.82e-13!1;UBERON:0009661!6.82e-13!1;UBERON:0003056!2.55e-11!61;UBERON:0005085!4.33e-10!29;UBERON:0007625!4.43e-10!11;UBERON:0003075!6.72e-10!86;UBERON:0007284!6.72e-10!86;UBERON:0002346!2.05e-09!90;UBERON:0001894!8.35e-08!7;UBERON:0006222!8.35e-08!7;UBERON:0005743!9.39e-08!86;UBERON:0002081!3.28e-07!2;UBERON:0002133!3.28e-07!2;UBERON:0002950!4.42e-07!2;UBERON:0001891!4.42e-07!2;UBERON:0009616!4.42e-07!2;UBERON:0000073!5.98e-07!94;UBERON:0001016!5.98e-07!94|ontology_enrichment_uberon_v019=UBERON:0001905;2.84e-66;2!UBERON:0002757;2.84e-66;2!UBERON:0010134;2.84e-66;2!UBERON:0005408;2.84e-66;2!UBERON:0001899;2.84e-66;2!UBERON:0003296;8.36e-34;4!UBERON:0010133;8.36e-34;4!UBERON:0002784;8.36e-34;4!UBERON:0000966;2.38e-27;5!UBERON:0005388;2.38e-27;5!UBERON:0001802;2.38e-27;5!UBERON:0001894;7.84e-20;7!UBERON:0000970;1.17e-15;20!UBERON:0002104;5.94e-15;21!UBERON:0000020;1.01e-13;23!UBERON:0001032;3.48e-13;24!UBERON:0004456;3.48e-13;24!UBERON:0000019;5.73e-08;19!UBERON:0000047;5.73e-08;19!UBERON:0004088;5.73e-08;19!UBERON:0010230;5.73e-08;19!UBERON:0001456;2.69e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.84e-66,2;UBERON:0002757,2.84e-66,2;UBERON:0010134,2.84e-66,2;UBERON:0005408,2.84e-66,2;UBERON:0001899,2.84e-66,2;UBERON:0003296,8.36e-34,4;UBERON:0010133,8.36e-34,4;UBERON:0002784,8.36e-34,4;UBERON:0000966,5.43e-23,6;UBERON:0005388,5.43e-23,6;UBERON:0001802,5.43e-23,6;UBERON:0001894,7.84e-20,7;UBERON:0006222,7.84e-20,7;UBERON:0000970,5.94e-15,21;UBERON:0002104,5.94e-15,21;UBERON:0000020,3.48e-13,24;UBERON:0001032,3.48e-13,24;UBERON:0004456,3.48e-13,24;UBERON:0003056,4.24e-09,61;UBERON:0000019,1.29e-07,20;UBERON:0000047,1.29e-07,20;UBERON:0010312,1.29e-07,20;UBERON:0004088,1.29e-07,20;UBERON:0010230,1.29e-07,20;UBERON:0003072,1.29e-07,20;UBERON:0004128,1.29e-07,20;UBERON:0003071,1.29e-07,20;UBERON:0001456,5.24e-07,22;UBERON:0003075,6.43e-07,82;UBERON:0007284,6.43e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.1407096322957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.968440444553616,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1736 | |||
|description=CAGE_peak_at_chr19:48344846..48344850,+ | |||
|id=chr19:48344846..48344850,+ | |||
|ontology_enrichment_celltype=CL:0002586!1.49e-16!3;CL:0000149!1.16e-12!4;CL:0000147!5.06e-08!14 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;9.77e-45;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.70e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.70e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!4.45e-38!5;UBERON:0005388!4.45e-38!5;UBERON:0001802!4.45e-38!5;UBERON:0001905!5.58e-25!2;UBERON:0002757!5.58e-25!2;UBERON:0010134!5.58e-25!2;UBERON:0002784!5.58e-25!2;UBERON:0005408!5.58e-25!2;UBERON:0001899!5.58e-25!2;UBERON:0000970!6.63e-21!20;UBERON:0002104!6.75e-20!21;UBERON:0000020!3.83e-18!23;UBERON:0001032!2.24e-17!24;UBERON:0004456!2.24e-17!24;UBERON:0001781!1.49e-16!3;UBERON:0001782!1.49e-16!3;UBERON:0005424!1.49e-16!3;UBERON:0000019!1.98e-15!19;UBERON:0000047!1.98e-15!19;UBERON:0004088!1.98e-15!19;UBERON:0003072!1.98e-15!19;UBERON:0003071!1.98e-15!19;UBERON:0004128!1.98e-15!19;UBERON:0001456!5.88e-14!21;UBERON:0002134!3.76e-13!1;UBERON:0005208!3.76e-13!1;UBERON:0005946!3.76e-13!1;UBERON:0005965!3.76e-13!1;UBERON:0002078!3.76e-13!1;UBERON:0003296!5.39e-13!4;UBERON:0010133!5.39e-13!4;UBERON:0002038!6.82e-13!1;UBERON:0009661!6.82e-13!1;UBERON:0003056!2.55e-11!61;UBERON:0005085!4.33e-10!29;UBERON:0007625!4.43e-10!11;UBERON:0003075!6.72e-10!86;UBERON:0007284!6.72e-10!86;UBERON:0002346!2.05e-09!90;UBERON:0001894!8.35e-08!7;UBERON:0006222!8.35e-08!7;UBERON:0005743!9.39e-08!86;UBERON:0002081!3.28e-07!2;UBERON:0002133!3.28e-07!2;UBERON:0002950!4.42e-07!2;UBERON:0001891!4.42e-07!2;UBERON:0009616!4.42e-07!2;UBERON:0000073!5.98e-07!94;UBERON:0001016!5.98e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.84e-66;2!UBERON:0002757;2.84e-66;2!UBERON:0010134;2.84e-66;2!UBERON:0005408;2.84e-66;2!UBERON:0001899;2.84e-66;2!UBERON:0003296;8.36e-34;4!UBERON:0010133;8.36e-34;4!UBERON:0002784;8.36e-34;4!UBERON:0000966;2.38e-27;5!UBERON:0005388;2.38e-27;5!UBERON:0001802;2.38e-27;5!UBERON:0001894;7.84e-20;7!UBERON:0000970;1.17e-15;20!UBERON:0002104;5.94e-15;21!UBERON:0000020;1.01e-13;23!UBERON:0001032;3.48e-13;24!UBERON:0004456;3.48e-13;24!UBERON:0000019;5.73e-08;19!UBERON:0000047;5.73e-08;19!UBERON:0004088;5.73e-08;19!UBERON:0010230;5.73e-08;19!UBERON:0001456;2.69e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.84e-66,2;UBERON:0002757,2.84e-66,2;UBERON:0010134,2.84e-66,2;UBERON:0005408,2.84e-66,2;UBERON:0001899,2.84e-66,2;UBERON:0003296,8.36e-34,4;UBERON:0010133,8.36e-34,4;UBERON:0002784,8.36e-34,4;UBERON:0000966,5.43e-23,6;UBERON:0005388,5.43e-23,6;UBERON:0001802,5.43e-23,6;UBERON:0001894,7.84e-20,7;UBERON:0006222,7.84e-20,7;UBERON:0000970,5.94e-15,21;UBERON:0002104,5.94e-15,21;UBERON:0000020,3.48e-13,24;UBERON:0001032,3.48e-13,24;UBERON:0004456,3.48e-13,24;UBERON:0003056,4.24e-09,61;UBERON:0000019,1.29e-07,20;UBERON:0000047,1.29e-07,20;UBERON:0010312,1.29e-07,20;UBERON:0004088,1.29e-07,20;UBERON:0010230,1.29e-07,20;UBERON:0003072,1.29e-07,20;UBERON:0004128,1.29e-07,20;UBERON:0003071,1.29e-07,20;UBERON:0001456,5.24e-07,22;UBERON:0003075,6.43e-07,82;UBERON:0007284,6.43e-07,82 | |||
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|short_description=p@chr19:48344846..48344850,+ | |||
}} |
Revision as of 21:33, 11 September 2013
Short description: | p@chr19:48344846..48344850, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:48344846..48344850, + |
Coexpression cluster: | C1736_retinoblastoma_eye_pituitary_Wilms_pineal_small_retina |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.84e-66 | 2 |
regional part of epithalamus | 2.84e-66 | 2 |
secretory circumventricular organ | 2.84e-66 | 2 |
circumventricular organ | 2.84e-66 | 2 |
epithalamus | 2.84e-66 | 2 |
gland of diencephalon | 8.36e-34 | 4 |
neuroendocrine gland | 8.36e-34 | 4 |
regional part of diencephalon | 8.36e-34 | 4 |
retina | 5.43e-23 | 6 |
photoreceptor array | 5.43e-23 | 6 |
posterior segment of eyeball | 5.43e-23 | 6 |
diencephalon | 7.84e-20 | 7 |
future diencephalon | 7.84e-20 | 7 |
eye | 5.94e-15 | 21 |
visual system | 5.94e-15 | 21 |
sense organ | 3.48e-13 | 24 |
sensory system | 3.48e-13 | 24 |
entire sense organ system | 3.48e-13 | 24 |
pre-chordal neural plate | 4.24e-09 | 61 |
camera-type eye | 1.29e-07 | 20 |
simple eye | 1.29e-07 | 20 |
immature eye | 1.29e-07 | 20 |
ocular region | 1.29e-07 | 20 |
eyeball of camera-type eye | 1.29e-07 | 20 |
optic cup | 1.29e-07 | 20 |
optic vesicle | 1.29e-07 | 20 |
eye primordium | 1.29e-07 | 20 |
face | 5.24e-07 | 22 |
neural plate | 6.43e-07 | 82 |
presumptive neural plate | 6.43e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.70e-09 | 4 |
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