FFCP PHASE1:Hg19::chr1:120354079..120354091,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=83998|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=22977|TSSclassifier=N|UniProt=Q9BYZ8,Q5T3X5|association_with_transcript=111bp_to_ENST00000354219,ENST00000369401,ENST00000369402,NM_001159352,NM_001159353,NM_032044,uc001eif.2,uc001eig.2,uc001eih.1_5end|coexpression_cluster_id=C25|description=CAGE_peak_1_at_REG4_5end|id=chr1:120354079..120354091,-|ontology_enrichment_celltype=CL:0002563!4.35e-07!4|ontology_enrichment_celltype_v019=CL:0002563;1.40e-10;4|ontology_enrichment_celltype_v019_2=CL:0002563,1.40e-10,4|ontology_enrichment_development_v019=UBERON:0009847;2.57e-13;3!UBERON:0003353;2.57e-13;3!UBERON:0006242;3.08e-11;1!UBERON:0001045;7.46e-11;1!UBERON:0009143;1.46e-10;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!9.08e-35!35;UBERON:0000160!4.21e-29!27;UBERON:0000059!3.11e-26!11;UBERON:0004921!1.69e-19!129;UBERON:0004185!1.69e-19!129;UBERON:0004907!1.79e-19!5;UBERON:0001007!3.83e-17!155;UBERON:0001555!3.83e-17!155;UBERON:0007026!3.83e-17!155;UBERON:0001155!5.41e-17!9;UBERON:0004119!2.53e-15!169;UBERON:0000925!2.53e-15!169;UBERON:0006595!2.53e-15!169;UBERON:0001046!1.35e-14!19;UBERON:0001052!4.44e-14!4;UBERON:0000077!1.64e-09!130;UBERON:0001154!1.97e-07!1;UBERON:0001153!1.97e-07!1;UBERON:0000945!3.53e-07!8;UBERON:0010039!3.53e-07!8;UBERON:0001242!4.35e-07!4;UBERON:0001262!4.35e-07!4;UBERON:0004786!4.35e-07!4;UBERON:0004808!4.35e-07!4;UBERON:0001277!4.35e-07!4;UBERON:0000481!4.46e-07!347;UBERON:0002336!5.19e-07!1;UBERON:0001018!5.19e-07!1;UBERON:0002473!5.19e-07!1;UBERON:0005340!5.19e-07!1;UBERON:0002316!5.19e-07!1;UBERON:0003544!5.19e-07!1;UBERON:0001020!5.19e-07!1;UBERON:0005970!5.19e-07!1;UBERON:0002437!5.19e-07!1;UBERON:0002372!6.97e-07!1;UBERON:0001961!6.97e-07!1;UBERON:0001744!6.97e-07!1;UBERON:0001735!6.97e-07!1;UBERON:0002108!8.45e-07!14|ontology_enrichment_uberon_v019=UBERON:0005409;6.34e-58;22!UBERON:0000160;7.67e-52;17!UBERON:0004921;2.54e-41;33!UBERON:0000059;8.75e-31;11!UBERON:0001155;1.39e-26;9!UBERON:0002108;2.21e-18;4!UBERON:0004907;1.18e-17;5!UBERON:0001555;2.52e-16;54!UBERON:0001154;7.46e-11;1!UBERON:0001153;7.46e-11;1!UBERON:0009854;7.46e-11;1!UBERON:0001242;1.40e-10;4!UBERON:0001262;1.40e-10;4!UBERON:0004786;1.40e-10;4!UBERON:0004808;1.40e-10;4!UBERON:0001277;1.40e-10;4!UBERON:0001052;1.95e-10;4!UBERON:0001007;5.53e-10;81!UBERON:0000945;1.72e-08;5!UBERON:0010039;1.72e-08;5!UBERON:0002367;3.44e-08;11!UBERON:0010147;3.44e-08;11!UBERON:0003937;1.51e-07;12!UBERON:0005399;1.51e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.67e-52,17;UBERON:0005409,4.78e-51,25;UBERON:0000059,8.75e-31,11;UBERON:0001155,1.39e-26,9;UBERON:0002108,2.21e-18,4;UBERON:0004921,6.35e-18,118;UBERON:0004907,1.18e-17,5;UBERON:0001046,2.28e-17,19;UBERON:0001007,3.21e-16,145;UBERON:0001555,3.21e-16,145;UBERON:0007026,3.21e-16,145;UBERON:0004119,1.85e-14,160;UBERON:0000925,1.85e-14,160;UBERON:0006595,1.85e-14,160;UBERON:0001154,7.46e-11,1;UBERON:0001153,7.46e-11,1;UBERON:0001045,7.46e-11,1;UBERON:0011216,8.29e-11,223;UBERON:0001242,1.40e-10,4;UBERON:0001262,1.40e-10,4;UBERON:0004786,1.40e-10,4;UBERON:0004808,1.40e-10,4;UBERON:0001277,1.40e-10,4;UBERON:0001052,1.95e-10,4;UBERON:0002367,3.49e-08,11;UBERON:0010147,3.49e-08,11;UBERON:0009846,3.49e-08,11;UBERON:0003353,3.49e-08,11;UBERON:0004902,3.49e-08,11;UBERON:0003820,3.49e-08,11;UBERON:0009847,3.49e-08,11;UBERON:0003937,1.53e-07,12;UBERON:0005399,1.53e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7586126251736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.46016147141356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.7083026873535,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9853440299639,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.5112064298064,0,28.8625960012766,162.231173299124,9.77648231893801,0,0,0,0.134802265961354,0,0,0,0,0,0,59.2854508638453,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,2.61870344518732,0,0,0,0,0,0,0,166.066429907216,0,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=83998 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22977 | |||
|TSSclassifier=N | |||
|UniProt=Q9BYZ8,Q5T3X5 | |||
|association_with_transcript=111bp_to_ENST00000354219,ENST00000369401,ENST00000369402,NM_001159352,NM_001159353,NM_032044,uc001eif.2,uc001eig.2,uc001eih.1_5end | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_REG4_5end | |||
|id=chr1:120354079..120354091,- | |||
|ontology_enrichment_celltype=CL:0002563!4.35e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002563;1.40e-10;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.40e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0009847;2.57e-13;3!UBERON:0003353;2.57e-13;3!UBERON:0006242;3.08e-11;1!UBERON:0001045;7.46e-11;1!UBERON:0009143;1.46e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!9.08e-35!35;UBERON:0000160!4.21e-29!27;UBERON:0000059!3.11e-26!11;UBERON:0004921!1.69e-19!129;UBERON:0004185!1.69e-19!129;UBERON:0004907!1.79e-19!5;UBERON:0001007!3.83e-17!155;UBERON:0001555!3.83e-17!155;UBERON:0007026!3.83e-17!155;UBERON:0001155!5.41e-17!9;UBERON:0004119!2.53e-15!169;UBERON:0000925!2.53e-15!169;UBERON:0006595!2.53e-15!169;UBERON:0001046!1.35e-14!19;UBERON:0001052!4.44e-14!4;UBERON:0000077!1.64e-09!130;UBERON:0001154!1.97e-07!1;UBERON:0001153!1.97e-07!1;UBERON:0000945!3.53e-07!8;UBERON:0010039!3.53e-07!8;UBERON:0001242!4.35e-07!4;UBERON:0001262!4.35e-07!4;UBERON:0004786!4.35e-07!4;UBERON:0004808!4.35e-07!4;UBERON:0001277!4.35e-07!4;UBERON:0000481!4.46e-07!347;UBERON:0002336!5.19e-07!1;UBERON:0001018!5.19e-07!1;UBERON:0002473!5.19e-07!1;UBERON:0005340!5.19e-07!1;UBERON:0002316!5.19e-07!1;UBERON:0003544!5.19e-07!1;UBERON:0001020!5.19e-07!1;UBERON:0005970!5.19e-07!1;UBERON:0002437!5.19e-07!1;UBERON:0002372!6.97e-07!1;UBERON:0001961!6.97e-07!1;UBERON:0001744!6.97e-07!1;UBERON:0001735!6.97e-07!1;UBERON:0002108!8.45e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.34e-58;22!UBERON:0000160;7.67e-52;17!UBERON:0004921;2.54e-41;33!UBERON:0000059;8.75e-31;11!UBERON:0001155;1.39e-26;9!UBERON:0002108;2.21e-18;4!UBERON:0004907;1.18e-17;5!UBERON:0001555;2.52e-16;54!UBERON:0001154;7.46e-11;1!UBERON:0001153;7.46e-11;1!UBERON:0009854;7.46e-11;1!UBERON:0001242;1.40e-10;4!UBERON:0001262;1.40e-10;4!UBERON:0004786;1.40e-10;4!UBERON:0004808;1.40e-10;4!UBERON:0001277;1.40e-10;4!UBERON:0001052;1.95e-10;4!UBERON:0001007;5.53e-10;81!UBERON:0000945;1.72e-08;5!UBERON:0010039;1.72e-08;5!UBERON:0002367;3.44e-08;11!UBERON:0010147;3.44e-08;11!UBERON:0003937;1.51e-07;12!UBERON:0005399;1.51e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.67e-52,17;UBERON:0005409,4.78e-51,25;UBERON:0000059,8.75e-31,11;UBERON:0001155,1.39e-26,9;UBERON:0002108,2.21e-18,4;UBERON:0004921,6.35e-18,118;UBERON:0004907,1.18e-17,5;UBERON:0001046,2.28e-17,19;UBERON:0001007,3.21e-16,145;UBERON:0001555,3.21e-16,145;UBERON:0007026,3.21e-16,145;UBERON:0004119,1.85e-14,160;UBERON:0000925,1.85e-14,160;UBERON:0006595,1.85e-14,160;UBERON:0001154,7.46e-11,1;UBERON:0001153,7.46e-11,1;UBERON:0001045,7.46e-11,1;UBERON:0011216,8.29e-11,223;UBERON:0001242,1.40e-10,4;UBERON:0001262,1.40e-10,4;UBERON:0004786,1.40e-10,4;UBERON:0004808,1.40e-10,4;UBERON:0001277,1.40e-10,4;UBERON:0001052,1.95e-10,4;UBERON:0002367,3.49e-08,11;UBERON:0010147,3.49e-08,11;UBERON:0009846,3.49e-08,11;UBERON:0003353,3.49e-08,11;UBERON:0004902,3.49e-08,11;UBERON:0003820,3.49e-08,11;UBERON:0009847,3.49e-08,11;UBERON:0003937,1.53e-07,12;UBERON:0005399,1.53e-07,12 | |||
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|short_description=p1@REG4 | |||
}} |
Revision as of 23:50, 11 September 2013
Short description: | p1@REG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_REG4_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 111bp_to_ENST00000354219, ENST00000369401, ENST00000369402, NM_001159352, NM_001159353, NM_032044, uc001eif.2, uc001eig.2, uc001eih.1_5end |
EntrezGene: | REG4 |
HGNC: | 22977 |
UniProt: | Q9BYZ8Q5T3X5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.40e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.67e-52 | 17 |
gastrointestinal system | 4.78e-51 | 25 |
large intestine | 8.75e-31 | 11 |
colon | 1.39e-26 | 9 |
small intestine | 2.21e-18 | 4 |
subdivision of digestive tract | 6.35e-18 | 118 |
lower digestive tract | 1.18e-17 | 5 |
hindgut | 2.28e-17 | 19 |
digestive system | 3.21e-16 | 145 |
digestive tract | 3.21e-16 | 145 |
primitive gut | 3.21e-16 | 145 |
endoderm-derived structure | 1.85e-14 | 160 |
endoderm | 1.85e-14 | 160 |
presumptive endoderm | 1.85e-14 | 160 |
vermiform appendix | 7.46e-11 | 1 |
caecum | 7.46e-11 | 1 |
midgut | 7.46e-11 | 1 |
organ system subdivision | 8.29e-11 | 223 |
intestinal mucosa | 1.40e-10 | 4 |
wall of intestine | 1.40e-10 | 4 |
gastrointestinal system mucosa | 1.40e-10 | 4 |
gastrointestinal system epithelium | 1.40e-10 | 4 |
intestinal epithelium | 1.40e-10 | 4 |
rectum | 1.95e-10 | 4 |
prostate gland | 3.49e-08 | 11 |
male accessory sex gland | 3.49e-08 | 11 |
embryonic cloacal epithelium | 3.49e-08 | 11 |
epithelium of hindgut | 3.49e-08 | 11 |
urogenital sinus epithelium | 3.49e-08 | 11 |
prostate bud | 3.49e-08 | 11 |
prostate field | 3.49e-08 | 11 |
sex gland | 1.53e-07 | 12 |
male reproductive gland | 1.53e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.