FFCP PHASE1:Hg19::chr20:49347993..49348004,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84612|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16245|TSSclassifier=S|UniProt=Q9BYG5|association_with_transcript=-76bp_to_ENST00000371610,NM_032521,uc002xvo.2_5end|coexpression_cluster_id=C1871|description=CAGE_peak_7_at_PARD6B_5end|id=chr20:49347993..49348004,+|ontology_enrichment_celltype=CL:0000066!5.54e-17!254;CL:0000223!5.25e-09!59|ontology_enrichment_celltype_v019=CL:0000039;3.91e-07;7!CL:0000586;3.91e-07;7|ontology_enrichment_celltype_v019_2=CL:0000039,4.51e-07,7;CL:0000586,4.51e-07,7|ontology_enrichment_development_v019=UBERON:0009117;3.43e-18;10!UBERON:0005564;3.43e-18;10!UBERON:0003918;3.43e-18;10!UBERON:0007687;3.43e-18;10!UBERON:0003104;3.36e-07;31|ontology_enrichment_disease=DOID:305!4.77e-29!106;DOID:0050687!2.83e-28!143;DOID:162!3.20e-18!235;DOID:14566!7.08e-18!239;DOID:299!6.71e-10!25;DOID:7!1.26e-09!39;DOID:3095!8.08e-07!22;DOID:2994!8.08e-07!22|ontology_enrichment_disease_v019=DOID:299;1.66e-19;25!DOID:5093;3.00e-13;4!DOID:1612;3.00e-13;4!DOID:4468;1.14e-11;2!DOID:7;1.40e-07;39!DOID:3111;7.12e-07;1!DOID:3347;7.12e-07;1!DOID:3603;7.12e-07;1|ontology_enrichment_disease_v019_2=DOID:299,2.16e-19,25;DOID:5093,3.03e-13,4;DOID:1612,3.03e-13,4;DOID:305,5.45e-12,106;DOID:4468,9.82e-12,2;DOID:0050687,1.88e-11,143;DOID:7,1.13e-09,39;DOID:3111,6.96e-07,1;DOID:3603,6.96e-07,1;DOID:3347,7.77e-07,1|ontology_enrichment_uberon=UBERON:0005911!6.29e-10!82;UBERON:0001007!6.38e-10!155;UBERON:0001555!6.38e-10!155;UBERON:0007026!6.38e-10!155;UBERON:0005177!1.68e-09!107;UBERON:0004119!1.74e-09!169;UBERON:0000925!1.74e-09!169;UBERON:0006595!1.74e-09!169;UBERON:0004921!2.79e-08!129;UBERON:0004185!2.79e-08!129;UBERON:0003929!1.79e-07!54;UBERON:0005172!2.35e-07!55;UBERON:0005173!2.35e-07!55;UBERON:0000466!2.38e-07!126;UBERON:0000077!3.32e-07!130|ontology_enrichment_uberon_v019=UBERON:0000991;2.33e-08;21!UBERON:0002113;3.06e-07;24!UBERON:0011143;3.06e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0000991,3.33e-08,21;UBERON:0009196,3.33e-08,21;UBERON:0009117,3.33e-08,21;UBERON:0005564,3.33e-08,21;UBERON:0004176,8.35e-08,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376627918784408,0.305653622991805,0.164201178899891,0,0,0,0,0,0.30120591877825,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.393419540227666,0,0,0.334372990781356,0,0.473447805734733,0,0.111410456885174,0,0,0,0,0,0.164437904603676,0,0,0.14828656316206,0,0,0,0,0,0.506039384039006,0,0,0.950452044448374,0.301150238155546,0,0,0,0,0,0,0.579297615531196,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0.72038491523742,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,1.09776335516636,0.927708378250397,1.2781333715647,0.621966330092223,0.756962552626885,0.72995471815166,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0,1.59884970106048,0.343135620597051,0.109750285408626,0,0.301586917234893,0.648119116109707,0,0,0,0.115930404975077,0,0,0,0,4.74122638775565,5.15091697256924,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0,0.513372145118994,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.604297247958111,0.40101294060657,1.01289087829486,0,0,0,0.451199612907412,0.539107359730903,0.784349769176855,0,0.73886140225013,0,0,0,0,0.541892875087706,0,0.764628819135115,0,0.447749509444357,0,0,0.512900250232778,0.984043937099117,0,0.515205058238611,0.183138929636687,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0.376575203107117,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,1.6023610669121,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,1.4098700508785,1.12284324244932,0,0.36408156524854,0,0,1.19372242368845,0.296964680832639,0.921482106297696,0,0,0.222617410045812,0.329607748453519,0.844501632511974,0,0.552567831062295,0,0.20453736500431,0,0,0.988551862620595,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,7.812832832557,0.0874599999961957,0,0.227586896570999,0.508507300585533,0.945550727071745,0.344743373241465,0,0.173624994933292,0,0.120596438625408,0,0.442317039724898,0.295547618953547,0,0.21787692703798,0.557694977114413,0.0769502585037971,0.341826167541004,0.69169171316418,0.269272933229316,1.19512109114209,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84612 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16245 | |||
|TSSclassifier=S | |||
|UniProt=Q9BYG5 | |||
|association_with_transcript=-76bp_to_ENST00000371610,NM_032521,uc002xvo.2_5end | |||
|coexpression_cluster_id=C1871 | |||
|description=CAGE_peak_7_at_PARD6B_5end | |||
|id=chr20:49347993..49348004,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.54e-17!254;CL:0000223!5.25e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.91e-07;7!CL:0000586;3.91e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.51e-07,7;CL:0000586,4.51e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.43e-18;10!UBERON:0005564;3.43e-18;10!UBERON:0003918;3.43e-18;10!UBERON:0007687;3.43e-18;10!UBERON:0003104;3.36e-07;31 | |||
|ontology_enrichment_disease=DOID:305!4.77e-29!106;DOID:0050687!2.83e-28!143;DOID:162!3.20e-18!235;DOID:14566!7.08e-18!239;DOID:299!6.71e-10!25;DOID:7!1.26e-09!39;DOID:3095!8.08e-07!22;DOID:2994!8.08e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:299;1.66e-19;25!DOID:5093;3.00e-13;4!DOID:1612;3.00e-13;4!DOID:4468;1.14e-11;2!DOID:7;1.40e-07;39!DOID:3111;7.12e-07;1!DOID:3347;7.12e-07;1!DOID:3603;7.12e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.16e-19,25;DOID:5093,3.03e-13,4;DOID:1612,3.03e-13,4;DOID:305,5.45e-12,106;DOID:4468,9.82e-12,2;DOID:0050687,1.88e-11,143;DOID:7,1.13e-09,39;DOID:3111,6.96e-07,1;DOID:3603,6.96e-07,1;DOID:3347,7.77e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005911!6.29e-10!82;UBERON:0001007!6.38e-10!155;UBERON:0001555!6.38e-10!155;UBERON:0007026!6.38e-10!155;UBERON:0005177!1.68e-09!107;UBERON:0004119!1.74e-09!169;UBERON:0000925!1.74e-09!169;UBERON:0006595!1.74e-09!169;UBERON:0004921!2.79e-08!129;UBERON:0004185!2.79e-08!129;UBERON:0003929!1.79e-07!54;UBERON:0005172!2.35e-07!55;UBERON:0005173!2.35e-07!55;UBERON:0000466!2.38e-07!126;UBERON:0000077!3.32e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0000991;2.33e-08;21!UBERON:0002113;3.06e-07;24!UBERON:0011143;3.06e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000991,3.33e-08,21;UBERON:0009196,3.33e-08,21;UBERON:0009117,3.33e-08,21;UBERON:0005564,3.33e-08,21;UBERON:0004176,8.35e-08,22 | |||
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| |||
|short_description=p7@PARD6B | |||
}} |
Revision as of 09:06, 12 September 2013
Short description: | p7@PARD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_PARD6B_5end |
Coexpression cluster: | C1871_breast_MCF7_clear_renal_amniotic_leiomyoblastoma_choriocarcinoma |
Association with transcript: | -76bp_to_ENST00000371610, NM_032521, uc002xvo.2_5end |
EntrezGene: | PARD6B |
HGNC: | 16245 |
UniProt: | Q9BYG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.51e-07 | 7 |
germ cell | 4.51e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
gonad | 3.33e-08 | 21 |
indifferent external genitalia | 3.33e-08 | 21 |
indifferent gonad | 3.33e-08 | 21 |
gonad primordium | 3.33e-08 | 21 |
external genitalia | 8.35e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.16e-19 | 25 |
thoracic cancer | 3.03e-13 | 4 |
breast cancer | 3.03e-13 | 4 |
carcinoma | 5.45e-12 | 106 |
clear cell adenocarcinoma | 9.82e-12 | 2 |
cell type cancer | 1.88e-11 | 143 |
disease of anatomical entity | 1.13e-09 | 39 |
cystadenocarcinoma | 6.96e-07 | 1 |
mucinous cystadenocarcinoma | 6.96e-07 | 1 |
osteosarcoma | 7.77e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.