FFCP PHASE1:Mm9::chr14:122874619..122874634,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=22772|HGNC=|MCL_coexpression_id=1661|UniProt=F8VPV3,Q62520|association_with_transcript=13bp_to_NM_009574,uc007vbd.1_5end|description=CAGE_peak_1_at_Zic2_5end|id=chr14:122874619..122874634,+|ontology_enrichment_celltype=CL:0000117!1.22e-13!23;CL:0000337!1.22e-13!23;CL:0000221!1.23e-13!44;CL:0000133!1.23e-13!44;CL:0002319!1.87e-13!43;CL:0000055!1.69e-11!50;CL:0000540!6.74e-08!33;CL:0000047!6.74e-08!33;CL:0000031!6.74e-08!33;CL:0000404!6.74e-08!33;CL:0002453!1.03e-07!8;CL:0000333!1.61e-07!10;CL:0000095!1.61e-07!10;CL:0000243!1.61e-07!10;CL:0000123!1.61e-07!10;CL:0000125!1.61e-07!10;CL:0000030!1.61e-07!10;CL:0000339!1.61e-07!10;CL:0000393!7.05e-07!39;CL:0000211!7.05e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.55e-15,23;CL:0000337,2.55e-15,23;CL:0000221,1.46e-14,44;CL:0000133,1.46e-14,44;CL:0002319,2.36e-14,43;CL:0000540,1.84e-09,33;CL:0000047,1.84e-09,33;CL:0000031,1.84e-09,33;CL:0000404,1.84e-09,33;CL:0002453,1.44e-08,8;CL:0000393,7.92e-07,39;CL:0000211,7.92e-07,39;CL:0000128,8.37e-07,6;CL:0000126,8.37e-07,6;CL:0000127,8.37e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.38e-32!63;UBERON:0000073!9.41e-31!75;UBERON:0001016!9.41e-31!75;UBERON:0001017!1.97e-30!73;UBERON:0005743!1.97e-30!73;UBERON:0004121!5.92e-30!102;UBERON:0000924!5.92e-30!102;UBERON:0006601!5.92e-30!102;UBERON:0001049!8.50e-29!52;UBERON:0005068!8.50e-29!52;UBERON:0006241!8.50e-29!52;UBERON:0007135!8.50e-29!52;UBERON:0002346!1.66e-28!71;UBERON:0003075!1.66e-28!71;UBERON:0007284!1.66e-28!71;UBERON:0000955!1.34e-27!50;UBERON:0006238!1.34e-27!50;UBERON:0002616!9.01e-27!49;UBERON:0003056!6.78e-26!49;UBERON:0003080!1.99e-20!40;UBERON:0002780!7.47e-20!39;UBERON:0001890!7.47e-20!39;UBERON:0006240!7.47e-20!39;UBERON:0000153!1.46e-19!94;UBERON:0007811!1.09e-17!86;UBERON:0002020!1.48e-16!34;UBERON:0002791!1.57e-13!29;UBERON:0003528!1.57e-13!29;UBERON:0001893!1.57e-13!29;UBERON:0003076!8.00e-09!12;UBERON:0003057!8.00e-09!12;UBERON:0000956!9.89e-09!21;UBERON:0001869!9.89e-09!21;UBERON:0000203!9.89e-09!21;UBERON:0001894!2.01e-07!10;UBERON:0006222!2.01e-07!10;UBERON:0002619!7.21e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.32e-34,64;UBERON:0003075,2.32e-34,64;UBERON:0007284,2.32e-34,64;UBERON:0001017,1.44e-33,73;UBERON:0004121,2.70e-32,95;UBERON:0000924,2.70e-32,95;UBERON:0006601,2.70e-32,95;UBERON:0000073,4.36e-32,54;UBERON:0001016,4.85e-32,75;UBERON:0001049,1.65e-30,52;UBERON:0005068,1.65e-30,52;UBERON:0006241,1.65e-30,52;UBERON:0007135,1.65e-30,52;UBERON:0010371,5.19e-30,73;UBERON:0003056,2.89e-27,49;UBERON:0000955,4.74e-27,47;UBERON:0006238,4.74e-27,47;UBERON:0002616,3.88e-26,46;UBERON:0003080,4.09e-21,40;UBERON:0002780,1.80e-20,39;UBERON:0001890,1.80e-20,39;UBERON:0006240,1.80e-20,39;UBERON:0010314,2.84e-19,92;UBERON:0002020,1.06e-17,34;UBERON:0003528,2.73e-14,29;UBERON:0002791,2.73e-14,29;UBERON:0001893,2.73e-14,29;UBERON:0003076,7.81e-10,12;UBERON:0003057,7.81e-10,12;UBERON:0000956,6.44e-09,21;UBERON:0001869,6.44e-09,21;UBERON:0000203,6.44e-09,21;UBERON:0001894,3.27e-07,10;UBERON:0006222,3.27e-07,10;UBERON:0002420,5.88e-07,8;UBERON:0007245,5.88e-07,8;UBERON:0010009,5.88e-07,8;UBERON:0010011,5.88e-07,8;UBERON:0000454,5.88e-07,8;UBERON:0000020,6.67e-07,12;UBERON:0001032,6.67e-07,12;UBERON:0004456,6.67e-07,12;UBERON:0000970,7.03e-07,9;UBERON:0000019,7.03e-07,9;UBERON:0000047,7.03e-07,9;UBERON:0010312,7.03e-07,9;UBERON:0004088,7.03e-07,9;UBERON:0002104,7.03e-07,9;UBERON:0001456,7.03e-07,9;UBERON:0003072,7.03e-07,9;UBERON:0004128,7.03e-07,9;UBERON:0003071,7.03e-07,9;UBERON:0002619,7.70e-07,17|phase1_expression=47.8845052843334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.93251082876205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.734187008646726,223.763924483539,7.41285531693518,60.8530726174487,77.1886699324905,114.788865732797,30.188038516644,0,0,0,0,0,0,14.7691016427506,14.8117474196169,19.0149421051854,71.1573517345177,139.619282989449,0,0,0,32.9560121570245,26.8952813725088,7.56934169851887,4.18518408828241,8.62332341540666,9.99778445413313,7.06779331045163,1.10241719293459,2.20444583341944,1.83843757322004,8.8092704799511,10.5980490610706,6.75868746327471,59.3488294785872,73.6475530999398,46.3612899795516,12.2840519560608,5.6276261003168,14.8214300343506,12.0797720044204,9.5389026135399,19.9447407033072,0.757261933331841,0.982430281388212,0,0,0,0,0,0,1.40444420131752,0,0,0,1.54927761754349,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,0.173485326766136,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,130.58023546715,136.768699549186,0,0,0,0,8.23848516726525,4.57500602818627,4.77486538028885,7.82209440865244,3.83573185995496,12.6750707181332,6.65189178577806,0.101839363850316,0,0,2.31486041475121,20.2987891021818,11.0353010128067,10.6236656585156,7.83665052745718,15.1041028115948,9.73664274164858,12.087522468205,4.65666067330228,18.7544153851573,6.61871280587367,4.92663147659057,1.97276159184817,0.556094498451196,0.348252166522167,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.72927835405207,20.0663994139605,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.66973185934077,7.85318300167761,0,0,0,0,0,0,0,0,0,0,0,20.2432429345738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,20.7070258136007,27.6827583295095,19.5046701878749,20.0394464015769,26.7553226403106,17.4421961838248,13.0919928119278,0.23467170806371,0,0,0,0.161464426695906,0.180938774784468,0,0.164140899745061,0,5.19190845629427,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,8.43546622821446,17.5839158954572,3.8613461763738,0,0,0,0,0,2.25900737046827,1.84130094602871,2.29158205375759,7.21783365843488,0.685082519770642,3.0215755895588,1.35004500046361,3.60256962579376,3.62513927187364,2.5888015587591,15.3605274424581,2.39414924040619,5.80494259564056,3.16038732188782,5.8691685535835,3.8607136774503,3.33370091702423,1.44224540067226,1.92551525755089,1.76888048234658,3.04175159868288,3.2066478035633,3.65201879132541,3.3293079250532,3.4461281373368,2.85776214769844,3.36064545240081,2.70072908649187,2.06042950401653,2.64958056241915,1.37147700954166,1.24233064311536,3.09967046931517,2.61623549938191,1.12931256498397,2.19997980518359,1.82927972872773,1.57841826862706,2.71608227691724,2.24456908663095,3.32178050747688,3.54616136552028,1.22769312950907,3.09873682371932,2.12197272079256,8.74337022782811,3.27504251823572,2.79332370262788,2.29545998482612,0.882365676478062,0.463735671240843|short_description=p1@Zic2}} | ||
|EntrezGene=22772 | |||
|HGNC= | |||
|MCL_coexpression_id=1661 | |||
|UniProt=F8VPV3,Q62520 | |||
|association_with_transcript=13bp_to_NM_009574,uc007vbd.1_5end | |||
|description=CAGE_peak_1_at_Zic2_5end | |||
|id=chr14:122874619..122874634,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.22e-13!23;CL:0000337!1.22e-13!23;CL:0000221!1.23e-13!44;CL:0000133!1.23e-13!44;CL:0002319!1.87e-13!43;CL:0000055!1.69e-11!50;CL:0000540!6.74e-08!33;CL:0000047!6.74e-08!33;CL:0000031!6.74e-08!33;CL:0000404!6.74e-08!33;CL:0002453!1.03e-07!8;CL:0000333!1.61e-07!10;CL:0000095!1.61e-07!10;CL:0000243!1.61e-07!10;CL:0000123!1.61e-07!10;CL:0000125!1.61e-07!10;CL:0000030!1.61e-07!10;CL:0000339!1.61e-07!10;CL:0000393!7.05e-07!39;CL:0000211!7.05e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.55e-15,23;CL:0000337,2.55e-15,23;CL:0000221,1.46e-14,44;CL:0000133,1.46e-14,44;CL:0002319,2.36e-14,43;CL:0000540,1.84e-09,33;CL:0000047,1.84e-09,33;CL:0000031,1.84e-09,33;CL:0000404,1.84e-09,33;CL:0002453,1.44e-08,8;CL:0000393,7.92e-07,39;CL:0000211,7.92e-07,39;CL:0000128,8.37e-07,6;CL:0000126,8.37e-07,6;CL:0000127,8.37e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.38e-32!63;UBERON:0000073!9.41e-31!75;UBERON:0001016!9.41e-31!75;UBERON:0001017!1.97e-30!73;UBERON:0005743!1.97e-30!73;UBERON:0004121!5.92e-30!102;UBERON:0000924!5.92e-30!102;UBERON:0006601!5.92e-30!102;UBERON:0001049!8.50e-29!52;UBERON:0005068!8.50e-29!52;UBERON:0006241!8.50e-29!52;UBERON:0007135!8.50e-29!52;UBERON:0002346!1.66e-28!71;UBERON:0003075!1.66e-28!71;UBERON:0007284!1.66e-28!71;UBERON:0000955!1.34e-27!50;UBERON:0006238!1.34e-27!50;UBERON:0002616!9.01e-27!49;UBERON:0003056!6.78e-26!49;UBERON:0003080!1.99e-20!40;UBERON:0002780!7.47e-20!39;UBERON:0001890!7.47e-20!39;UBERON:0006240!7.47e-20!39;UBERON:0000153!1.46e-19!94;UBERON:0007811!1.09e-17!86;UBERON:0002020!1.48e-16!34;UBERON:0002791!1.57e-13!29;UBERON:0003528!1.57e-13!29;UBERON:0001893!1.57e-13!29;UBERON:0003076!8.00e-09!12;UBERON:0003057!8.00e-09!12;UBERON:0000956!9.89e-09!21;UBERON:0001869!9.89e-09!21;UBERON:0000203!9.89e-09!21;UBERON:0001894!2.01e-07!10;UBERON:0006222!2.01e-07!10;UBERON:0002619!7.21e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.32e-34,64;UBERON:0003075,2.32e-34,64;UBERON:0007284,2.32e-34,64;UBERON:0001017,1.44e-33,73;UBERON:0004121,2.70e-32,95;UBERON:0000924,2.70e-32,95;UBERON:0006601,2.70e-32,95;UBERON:0000073,4.36e-32,54;UBERON:0001016,4.85e-32,75;UBERON:0001049,1.65e-30,52;UBERON:0005068,1.65e-30,52;UBERON:0006241,1.65e-30,52;UBERON:0007135,1.65e-30,52;UBERON:0010371,5.19e-30,73;UBERON:0003056,2.89e-27,49;UBERON:0000955,4.74e-27,47;UBERON:0006238,4.74e-27,47;UBERON:0002616,3.88e-26,46;UBERON:0003080,4.09e-21,40;UBERON:0002780,1.80e-20,39;UBERON:0001890,1.80e-20,39;UBERON:0006240,1.80e-20,39;UBERON:0010314,2.84e-19,92;UBERON:0002020,1.06e-17,34;UBERON:0003528,2.73e-14,29;UBERON:0002791,2.73e-14,29;UBERON:0001893,2.73e-14,29;UBERON:0003076,7.81e-10,12;UBERON:0003057,7.81e-10,12;UBERON:0000956,6.44e-09,21;UBERON:0001869,6.44e-09,21;UBERON:0000203,6.44e-09,21;UBERON:0001894,3.27e-07,10;UBERON:0006222,3.27e-07,10;UBERON:0002420,5.88e-07,8;UBERON:0007245,5.88e-07,8;UBERON:0010009,5.88e-07,8;UBERON:0010011,5.88e-07,8;UBERON:0000454,5.88e-07,8;UBERON:0000020,6.67e-07,12;UBERON:0001032,6.67e-07,12;UBERON:0004456,6.67e-07,12;UBERON:0000970,7.03e-07,9;UBERON:0000019,7.03e-07,9;UBERON:0000047,7.03e-07,9;UBERON:0010312,7.03e-07,9;UBERON:0004088,7.03e-07,9;UBERON:0002104,7.03e-07,9;UBERON:0001456,7.03e-07,9;UBERON:0003072,7.03e-07,9;UBERON:0004128,7.03e-07,9;UBERON:0003071,7.03e-07,9;UBERON:0002619,7.70e-07,17 | |||
|phase1_expression=47.8845052843334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.93251082876205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.734187008646726,223.763924483539,7.41285531693518,60.8530726174487,77.1886699324905,114.788865732797,30.188038516644,0,0,0,0,0,0,14.7691016427506,14.8117474196169,19.0149421051854,71.1573517345177,139.619282989449,0,0,0,32.9560121570245,26.8952813725088,7.56934169851887,4.18518408828241,8.62332341540666,9.99778445413313,7.06779331045163,1.10241719293459,2.20444583341944,1.83843757322004,8.8092704799511,10.5980490610706,6.75868746327471,59.3488294785872,73.6475530999398,46.3612899795516,12.2840519560608,5.6276261003168,14.8214300343506,12.0797720044204,9.5389026135399,19.9447407033072,0.757261933331841,0.982430281388212,0,0,0,0,0,0,1.40444420131752,0,0,0,1.54927761754349,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,0.173485326766136,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,130.58023546715,136.768699549186,0,0,0,0,8.23848516726525,4.57500602818627,4.77486538028885,7.82209440865244,3.83573185995496,12.6750707181332,6.65189178577806,0.101839363850316,0,0,2.31486041475121,20.2987891021818,11.0353010128067,10.6236656585156,7.83665052745718,15.1041028115948,9.73664274164858,12.087522468205,4.65666067330228,18.7544153851573,6.61871280587367,4.92663147659057,1.97276159184817,0.556094498451196,0.348252166522167,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.72927835405207,20.0663994139605,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.66973185934077,7.85318300167761,0,0,0,0,0,0,0,0,0,0,0,20.2432429345738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,20.7070258136007,27.6827583295095,19.5046701878749,20.0394464015769,26.7553226403106,17.4421961838248,13.0919928119278,0.23467170806371,0,0,0,0.161464426695906,0.180938774784468,0,0.164140899745061,0,5.19190845629427,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,8.43546622821446,17.5839158954572,3.8613461763738,0,0,0,0,0,2.25900737046827,1.84130094602871,2.29158205375759,7.21783365843488,0.685082519770642,3.0215755895588,1.35004500046361,3.60256962579376,3.62513927187364,2.5888015587591,15.3605274424581,2.39414924040619,5.80494259564056,3.16038732188782,5.8691685535835,3.8607136774503,3.33370091702423,1.44224540067226,1.92551525755089,1.76888048234658,3.04175159868288,3.2066478035633,3.65201879132541,3.3293079250532,3.4461281373368,2.85776214769844,3.36064545240081,2.70072908649187,2.06042950401653,2.64958056241915,1.37147700954166,1.24233064311536,3.09967046931517,2.61623549938191,1.12931256498397,2.19997980518359,1.82927972872773,1.57841826862706,2.71608227691724,2.24456908663095,3.32178050747688,3.54616136552028,1.22769312950907,3.09873682371932,2.12197272079256,8.74337022782811,3.27504251823572,2.79332370262788,2.29545998482612,0.882365676478062,0.463735671240843 | |||
|short_description=p1@Zic2 | |||
}} |
Revision as of 01:37, 13 September 2013
Short description: | p1@Zic2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zic2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1661 |
Association with transcript: | 13bp_to_NM_009574, uc007vbd.1_5end |
EntrezGene: | Zic2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.55e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.55e-15 | 23 |
ectodermal cell | 1.46e-14 | 44 |
neurectodermal cell | 1.46e-14 | 44 |
neural cell | 2.36e-14 | 43 |
neuron | 1.84e-09 | 33 |
neuronal stem cell | 1.84e-09 | 33 |
neuroblast | 1.84e-09 | 33 |
electrically signaling cell | 1.84e-09 | 33 |
oligodendrocyte precursor cell | 1.44e-08 | 8 |
electrically responsive cell | 7.92e-07 | 39 |
electrically active cell | 7.92e-07 | 39 |
oligodendrocyte | 8.37e-07 | 6 |
macroglial cell | 8.37e-07 | 6 |
astrocyte | 8.37e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.