FFCP PHASE1:Mm9::chr15:99288173..99288184,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=380969|HGNC=|UniProt=Q6GQX2|association_with_transcript=0bp_to_ENSMUST00000023747,NM_001001884,uc007xpn.1_5end|description=CAGE_peak_3_at_Nckap5l_5end|id=chr15:99288173..99288184,-|ontology_enrichment_celltype=CL:0000117!1.61e-07!23;CL:0000337!1.61e-07!23;CL:0000540!4.65e-07!33;CL:0000047!4.65e-07!33;CL:0000031!4.65e-07!33;CL:0000404!4.65e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.95e-09,23;CL:0000337,2.95e-09,23;CL:0000540,5.10e-07,33;CL:0000047,5.10e-07,33;CL:0000031,5.10e-07,33;CL:0000404,5.10e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.67e-15!71;UBERON:0003075!5.67e-15!71;UBERON:0007284!5.67e-15!71;UBERON:0001017!1.00e-14!73;UBERON:0005743!1.00e-14!73;UBERON:0000073!1.75e-14!75;UBERON:0001016!1.75e-14!75;UBERON:0001049!2.18e-14!52;UBERON:0005068!2.18e-14!52;UBERON:0006241!2.18e-14!52;UBERON:0007135!2.18e-14!52;UBERON:0004121!8.15e-14!102;UBERON:0000924!8.15e-14!102;UBERON:0006601!8.15e-14!102;UBERON:0003080!3.92e-11!40;UBERON:0000955!4.21e-11!50;UBERON:0006238!4.21e-11!50;UBERON:0003056!4.33e-11!49;UBERON:0002616!4.37e-11!49;UBERON:0002780!1.30e-10!39;UBERON:0001890!1.30e-10!39;UBERON:0006240!1.30e-10!39;UBERON:0002020!3.17e-10!34;UBERON:0000033!3.89e-10!63;UBERON:0007811!1.68e-08!86;UBERON:0002791!2.56e-08!29;UBERON:0003528!2.56e-08!29;UBERON:0001893!2.56e-08!29;UBERON:0000153!2.91e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.00e-16,52;UBERON:0005068,1.00e-16,52;UBERON:0006241,1.00e-16,52;UBERON:0007135,1.00e-16,52;UBERON:0002346,1.78e-16,64;UBERON:0003075,1.78e-16,64;UBERON:0007284,1.78e-16,64;UBERON:0001017,1.65e-15,73;UBERON:0010371,4.80e-15,73;UBERON:0001016,8.84e-15,75;UBERON:0000073,1.70e-14,54;UBERON:0004121,8.20e-14,95;UBERON:0000924,8.20e-14,95;UBERON:0006601,8.20e-14,95;UBERON:0010314,4.53e-13,92;UBERON:0002616,5.25e-13,46;UBERON:0002020,1.21e-12,34;UBERON:0000955,1.49e-12,47;UBERON:0006238,1.49e-12,47;UBERON:0003056,5.62e-12,49;UBERON:0003080,6.18e-12,40;UBERON:0002780,4.11e-11,39;UBERON:0001890,4.11e-11,39;UBERON:0006240,4.11e-11,39;UBERON:0003528,8.97e-10,29;UBERON:0002791,8.97e-10,29;UBERON:0001893,8.97e-10,29;UBERON:0000025,5.58e-08,114;UBERON:0004111,2.86e-07,122;UBERON:0000369,4.07e-07,5;UBERON:0002435,4.07e-07,5;UBERON:0000204,4.07e-07,5;UBERON:0010082,4.07e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.387369970324729,0.140788722151667,0.468129052643987,0.68487187290202,0.159544317990673,0.342401459862411,0.262261207256992,0,0,0,0.157731082679119,0.137114433605739,0.42438965179803,0.255129870453209,0.595745707205312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.183546752161682,0,0.65407546914134,0,0,0.279972843250725,0,0,0,1.68046899571232,1.02903774414379,0.573066879877513,0.515672092277442,1.82084814773638,2.11596391708813,2.53532561402472,0.677689064138264,0,0.449949858640699,0.988866362566974,1.4209602298922,0.599200221036809,2.30530983192933,1.24427534770173,1.21505344498522,0.630974884054146,0.571301968807607,1.54607978666129,0.857435594504678,1.34183659425531,1.83843757322004,0,0.383062014255563,0.921639199537461,1.31886287730194,1.64677758484337,1.56274011167028,0.837548997004143,1.12552522006336,0.45839474333043,1.47314292736834,1.70846016958924,1.3047961207771,0.37863096666592,0.604572480854284,0.289864488701678,0,0,0,0,0,0.140444420131752,0.511290967734173,0,0.35333957451034,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0,0.593768556259299,0.520455980298408,0.913396434936424,0.922461989024234,0.60289056221049,1.05829836422134,0.376999773989026,0.247194967734374,0.289198713839823,0,0.485300549842228,0,0.484875253135222,1.86391761218122,1.17112318804619,2.09446706813455,0,0,0,0.127070227073065,1.49790639404823,2.28750301409313,2.26177833803156,0.869121600961382,2.55715457330331,0.83115217823824,2.43361894601636,0.611036183101898,0.373220911830279,0.252722758433675,0,1.04096354370163,0.229902104433473,0.720248519221397,1.05493372485001,1.29269348387523,0.512454881139399,0.562210347358373,1.03481348295606,0.862271971731369,1.13463648100692,0.879755620819744,0.219195732427575,1.39023624612799,0,0.205782136407943,0.995171334092466,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.946978942340841,0.787056926989615,0.154267112887378,0.465067889500816,1.07309360559848,1.05088808130453,0.493679549740441,0,0.0810688095458557,0.146199987425332,1.09775057645525,1.07365135008297,1.26173969138476,2.16099685996497,0.330418782983798,0,1.49301775374664,1.39342003116263,0.515469845288373,0.403367049246685,0,0.570676878337677,0,0,0.502670417600539,0.198956472041151,0,0,0.648414149624083,0.199141273254367,0.569003702859245,0.685491075658373,1.1270773567308,0.610953983535943,0.775809948670503,0.420814919341911,0.822074982615345,0,0,0.370191491765402,0,0,0.196558995113203,0,0,0.241177159752417,0.25462585178142,0,0.324270453550071,0,0,0.372140947668503,0,0,0,0,0.369506380333209,0.568474235311454,1.30371981153621,0.67898034310075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| ||
|EntrezGene=380969 | |||
|HGNC= | |||
|UniProt=Q6GQX2 | |||
|association_with_transcript=0bp_to_ENSMUST00000023747,NM_001001884,uc007xpn.1_5end | |||
|description=CAGE_peak_3_at_Nckap5l_5end | |||
|id=chr15:99288173..99288184,- | |||
|ontology_enrichment_celltype=CL:0000117!1.61e-07!23;CL:0000337!1.61e-07!23;CL:0000540!4.65e-07!33;CL:0000047!4.65e-07!33;CL:0000031!4.65e-07!33;CL:0000404!4.65e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.95e-09,23;CL:0000337,2.95e-09,23;CL:0000540,5.10e-07,33;CL:0000047,5.10e-07,33;CL:0000031,5.10e-07,33;CL:0000404,5.10e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.67e-15!71;UBERON:0003075!5.67e-15!71;UBERON:0007284!5.67e-15!71;UBERON:0001017!1.00e-14!73;UBERON:0005743!1.00e-14!73;UBERON:0000073!1.75e-14!75;UBERON:0001016!1.75e-14!75;UBERON:0001049!2.18e-14!52;UBERON:0005068!2.18e-14!52;UBERON:0006241!2.18e-14!52;UBERON:0007135!2.18e-14!52;UBERON:0004121!8.15e-14!102;UBERON:0000924!8.15e-14!102;UBERON:0006601!8.15e-14!102;UBERON:0003080!3.92e-11!40;UBERON:0000955!4.21e-11!50;UBERON:0006238!4.21e-11!50;UBERON:0003056!4.33e-11!49;UBERON:0002616!4.37e-11!49;UBERON:0002780!1.30e-10!39;UBERON:0001890!1.30e-10!39;UBERON:0006240!1.30e-10!39;UBERON:0002020!3.17e-10!34;UBERON:0000033!3.89e-10!63;UBERON:0007811!1.68e-08!86;UBERON:0002791!2.56e-08!29;UBERON:0003528!2.56e-08!29;UBERON:0001893!2.56e-08!29;UBERON:0000153!2.91e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.00e-16,52;UBERON:0005068,1.00e-16,52;UBERON:0006241,1.00e-16,52;UBERON:0007135,1.00e-16,52;UBERON:0002346,1.78e-16,64;UBERON:0003075,1.78e-16,64;UBERON:0007284,1.78e-16,64;UBERON:0001017,1.65e-15,73;UBERON:0010371,4.80e-15,73;UBERON:0001016,8.84e-15,75;UBERON:0000073,1.70e-14,54;UBERON:0004121,8.20e-14,95;UBERON:0000924,8.20e-14,95;UBERON:0006601,8.20e-14,95;UBERON:0010314,4.53e-13,92;UBERON:0002616,5.25e-13,46;UBERON:0002020,1.21e-12,34;UBERON:0000955,1.49e-12,47;UBERON:0006238,1.49e-12,47;UBERON:0003056,5.62e-12,49;UBERON:0003080,6.18e-12,40;UBERON:0002780,4.11e-11,39;UBERON:0001890,4.11e-11,39;UBERON:0006240,4.11e-11,39;UBERON:0003528,8.97e-10,29;UBERON:0002791,8.97e-10,29;UBERON:0001893,8.97e-10,29;UBERON:0000025,5.58e-08,114;UBERON:0004111,2.86e-07,122;UBERON:0000369,4.07e-07,5;UBERON:0002435,4.07e-07,5;UBERON:0000204,4.07e-07,5;UBERON:0010082,4.07e-07,5 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.387369970324729,0.140788722151667,0.468129052643987,0.68487187290202,0.159544317990673,0.342401459862411,0.262261207256992,0,0,0,0.157731082679119,0.137114433605739,0.42438965179803,0.255129870453209,0.595745707205312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.183546752161682,0,0.65407546914134,0,0,0.279972843250725,0,0,0,1.68046899571232,1.02903774414379,0.573066879877513,0.515672092277442,1.82084814773638,2.11596391708813,2.53532561402472,0.677689064138264,0,0.449949858640699,0.988866362566974,1.4209602298922,0.599200221036809,2.30530983192933,1.24427534770173,1.21505344498522,0.630974884054146,0.571301968807607,1.54607978666129,0.857435594504678,1.34183659425531,1.83843757322004,0,0.383062014255563,0.921639199537461,1.31886287730194,1.64677758484337,1.56274011167028,0.837548997004143,1.12552522006336,0.45839474333043,1.47314292736834,1.70846016958924,1.3047961207771,0.37863096666592,0.604572480854284,0.289864488701678,0,0,0,0,0,0.140444420131752,0.511290967734173,0,0.35333957451034,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0,0.593768556259299,0.520455980298408,0.913396434936424,0.922461989024234,0.60289056221049,1.05829836422134,0.376999773989026,0.247194967734374,0.289198713839823,0,0.485300549842228,0,0.484875253135222,1.86391761218122,1.17112318804619,2.09446706813455,0,0,0,0.127070227073065,1.49790639404823,2.28750301409313,2.26177833803156,0.869121600961382,2.55715457330331,0.83115217823824,2.43361894601636,0.611036183101898,0.373220911830279,0.252722758433675,0,1.04096354370163,0.229902104433473,0.720248519221397,1.05493372485001,1.29269348387523,0.512454881139399,0.562210347358373,1.03481348295606,0.862271971731369,1.13463648100692,0.879755620819744,0.219195732427575,1.39023624612799,0,0.205782136407943,0.995171334092466,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.946978942340841,0.787056926989615,0.154267112887378,0.465067889500816,1.07309360559848,1.05088808130453,0.493679549740441,0,0.0810688095458557,0.146199987425332,1.09775057645525,1.07365135008297,1.26173969138476,2.16099685996497,0.330418782983798,0,1.49301775374664,1.39342003116263,0.515469845288373,0.403367049246685,0,0.570676878337677,0,0,0.502670417600539,0.198956472041151,0,0,0.648414149624083,0.199141273254367,0.569003702859245,0.685491075658373,1.1270773567308,0.610953983535943,0.775809948670503,0.420814919341911,0.822074982615345,0,0,0.370191491765402,0,0,0.196558995113203,0,0,0.241177159752417,0.25462585178142,0,0.324270453550071,0,0,0.372140947668503,0,0,0,0,0.369506380333209,0.568474235311454,1.30371981153621,0.678980343100753,0,1.17254380209271,1.19021820443007,0.780534591431195,0.630540576424764,0.8858587585951,1.11618338060241,0.655453258862952,1.20879487306127,1.15719246865209,0,0,0,0,0.642202359951168,1.87538698547525,0.163934945376675,0.757412781613119,0.315508219416257,0.780877488593277,1.07711698866399,0.238968797952552,0.668396022247182,1.98153571552183,0.404810701674894,0.876767573733936,0.395287777946524,0.642642632843614,0.567760340833074,0.712262414669021,0.977321756121456,0.989820737835213,0,0.485561272309963,0.906970670894253,0.188605079755898,0,0.307435147943927,0.516856586336442,0.363533729477506,0,0.316036757935816,0,0,1.70219802876894,0.36012218806262,1.29358683782755,0.643011105094777,1.06404140185364,0.713475270408282,0.822745103010605,1.2178597964584,0.469343416127421,0,0,0.16488625294148,1.29171541356724,0.844380948994182,0.596861720015682,0.984845398470368,0.582961673259701,1.29797711407357,0.512612642393558,0.619160603889667,0.185194527369712,0,0.27338845544205,0.228778173206523,0.339956859987711,0,0.138199973804424,0.954670618015114,0.949007980743406,1.01659733563424,0.108005340821801,0,0,0,0.330613822901344,0.523511883968059,0.129614973291793,0,0,0.747582730219894,0.66183396182839,0.583353565032143,0.774958940866387,1.520605129417,0.938857909166032,0.911430693907651,1.25831213310853,0.241584120826006,0.576060012515731,0.632022241256357,0,0.410843828659309,0.909445760844565,0.537080087002444,0.79472541912506,0.721172697119813,0.886137163047463,0.706765149637033,0.609654453239999,0.604957110821043,1.16949456887703,0.865906574762965,0.935015217452552,0,0,0.62799699626633,0.335769232728157,0.772758376128762,0.563047426353546,1.09890974560359,0.214368379079066,0.501572104035363,1.12950368523413,3.22227665555024,2.29158205375759,0.859265911718438,1.37016503954128,0.755393897389701,0.675022500231806,0.45032120322422,1.35942722695261,1.03552062350364,0.93408612825759,1.99512436700516,0.512200817262403,0.729320151204882,0.209613162627982,1.2869045591501,0.222246727801615,0.618105171716683,0,0.758091635291392,0.50695859978048,0.565879024158229,0.842773567228942,0.640251524048693,0.861532034334199,0.476293691283074,0.695305955669133,1.92909220463705,1.23625770240992,1.03039244094078,0.685738504770831,1.06485483695602,0.953744759789284,1.0174249164263,1.03520318456864,0.761531471025089,1.09756783723664,0.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| |||
|short_description=p3@Nckap5l | |||
}} |
Revision as of 11:52, 13 September 2013
Short description: | p3@Nckap5l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nckap5l_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000023747, NM_001001884, uc007xpn.1_5end |
EntrezGene: | Nckap5l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.95e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.95e-09 | 23 |
neuron | 5.10e-07 | 33 |
neuronal stem cell | 5.10e-07 | 33 |
neuroblast | 5.10e-07 | 33 |
electrically signaling cell | 5.10e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.00e-16 | 52 |
neural rod | 1.00e-16 | 52 |
future spinal cord | 1.00e-16 | 52 |
neural keel | 1.00e-16 | 52 |
neurectoderm | 1.78e-16 | 64 |
neural plate | 1.78e-16 | 64 |
presumptive neural plate | 1.78e-16 | 64 |
central nervous system | 1.65e-15 | 73 |
ecto-epithelium | 4.80e-15 | 73 |
nervous system | 8.84e-15 | 75 |
regional part of nervous system | 1.70e-14 | 54 |
ectoderm-derived structure | 8.20e-14 | 95 |
ectoderm | 8.20e-14 | 95 |
presumptive ectoderm | 8.20e-14 | 95 |
structure with developmental contribution from neural crest | 4.53e-13 | 92 |
regional part of brain | 5.25e-13 | 46 |
gray matter | 1.21e-12 | 34 |
brain | 1.49e-12 | 47 |
future brain | 1.49e-12 | 47 |
pre-chordal neural plate | 5.62e-12 | 49 |
anterior neural tube | 6.18e-12 | 40 |
regional part of forebrain | 4.11e-11 | 39 |
forebrain | 4.11e-11 | 39 |
future forebrain | 4.11e-11 | 39 |
brain grey matter | 8.97e-10 | 29 |
regional part of telencephalon | 8.97e-10 | 29 |
telencephalon | 8.97e-10 | 29 |
tube | 5.58e-08 | 114 |
anatomical conduit | 2.86e-07 | 122 |
corpus striatum | 4.07e-07 | 5 |
striatum | 4.07e-07 | 5 |
ventral part of telencephalon | 4.07e-07 | 5 |
future corpus striatum | 4.07e-07 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.