FFCP PHASE1:Hg19::chr4:88720698..88720722,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3381|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5341|TSSclassifier=N|UniProt=P21815|association_with_transcript=0bp_to_NM_004967,uc003hqx.3_5end|coexpression_cluster_id=C77|description=CAGE_peak_1_at_IBSP_5end|id=chr4:88720698..88720722,+|ontology_enrichment_celltype=CL:0000062!2.73e-11!11;CL:0000375!2.73e-11!11;CL:0000335!2.73e-11!11;CL:0002564!8.09e-09!3;CL:0000153!5.01e-07!9;CL:0000447!5.01e-07!9|ontology_enrichment_celltype_v019=CL:0000062;1.36e-15;9!CL:0002564;2.34e-12;3!CL:0000153;9.49e-09;9!CL:0000447;9.49e-09;9|ontology_enrichment_celltype_v019_2=CL:0000062,8.86e-13,11;CL:0000375,8.86e-13,11;CL:0000335,8.86e-13,11;CL:0002564,2.40e-12,3;CL:0000153,8.52e-09,9;CL:0000447,8.52e-09,9|ontology_enrichment_development_v019=CL:0000335;8.59e-13;11!UBERON:0010115;6.59e-10;1!UBERON:0006222;1.91e-09;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2513;1.91e-09;1|ontology_enrichment_disease_v019_2=DOID:2513,1.76e-09,1|ontology_enrichment_uberon=UBERON:0001894!4.47e-13!7;UBERON:0006222!4.47e-13!7;UBERON:0001049!1.92e-12!57;UBERON:0005068!1.92e-12!57;UBERON:0006241!1.92e-12!57;UBERON:0007135!1.92e-12!57;UBERON:0007023!2.94e-12!115;UBERON:0003296!1.09e-10!4;UBERON:0010133!1.09e-10!4;UBERON:0002780!1.69e-10!41;UBERON:0001890!1.69e-10!41;UBERON:0006240!1.69e-10!41;UBERON:0002616!1.93e-10!59;UBERON:0003080!3.64e-10!42;UBERON:0001017!7.16e-10!82;UBERON:0000200!2.19e-09!6;UBERON:0005743!3.70e-09!86;UBERON:0000955!4.56e-09!69;UBERON:0006238!4.56e-09!69;UBERON:0002242!8.09e-09!3;UBERON:0003068!8.09e-09!3;UBERON:0002328!8.09e-09!3;UBERON:0004880!8.09e-09!3;UBERON:0003075!2.04e-08!86;UBERON:0007284!2.04e-08!86;UBERON:0002346!8.24e-08!90;UBERON:0000073!8.75e-08!94;UBERON:0001016!8.75e-08!94|ontology_enrichment_uberon_v019=UBERON:0004765;2.35e-15;26!UBERON:0002242;2.34e-12;3!UBERON:0001474;8.97e-12;18!UBERON:0001894;4.21e-11;7!UBERON:0001434;2.48e-10;36!UBERON:0004905;5.17e-10;8!UBERON:0000982;5.17e-10;8!UBERON:0004770;5.17e-10;8!UBERON:0002363;6.59e-10;1!UBERON:0011135;9.28e-08;5!UBERON:0002216;9.28e-08;5!UBERON:0011134;9.28e-08;5!UBERON:0002209;9.28e-08;5!UBERON:0002213;9.28e-08;5!UBERON:0007844;9.28e-08;5!UBERON:0011138;9.28e-08;5!UBERON:0001130;9.28e-08;5!UBERON:0001066;9.28e-08;5!UBERON:0001468;9.28e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0002242,2.40e-12,3;UBERON:0003068,2.40e-12,3;UBERON:0002328,2.40e-12,3;UBERON:0004880,2.40e-12,3;UBERON:0001894,4.22e-11,7;UBERON:0006222,4.22e-11,7;UBERON:0004905,5.26e-10,8;UBERON:0000982,5.26e-10,8;UBERON:0004770,5.26e-10,8;UBERON:0002363,6.31e-10,1;UBERON:0007645,6.31e-10,1;UBERON:0007647,6.31e-10,1;UBERON:0010115,6.31e-10,1;UBERON:0011135,9.44e-08,5;UBERON:0002216,9.44e-08,5;UBERON:0011134,9.44e-08,5;UBERON:0002209,9.44e-08,5;UBERON:0002213,9.44e-08,5;UBERON:0005856,9.44e-08,5;UBERON:0005866,9.44e-08,5;UBERON:0005863,9.44e-08,5;UBERON:0007844,9.44e-08,5;UBERON:0011138,9.44e-08,5;UBERON:0001130,9.44e-08,5;UBERON:0001066,9.44e-08,5;UBERON:0001468,9.44e-08,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0.870627715885752,0,0,0,0,0,0.605399502633369,0,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75208386025565,1.5905718941022,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,2.25095607382472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0,0.901428353439581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,1.74306691720059,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,4.04881922673162,8.00272833695483,0.542530047399471,0,0,0,0,0.601892199455438,2.27407504055985,0,0,0.921845842708516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,106.037440259642,141.503792363808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0.74129687641568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,1.47775344708365,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,1.55519793830904,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.615602068030377,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1713222286267,0,0,0,0,0,0,7.70876271467553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3381 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5341 | |||
|TSSclassifier=N | |||
|UniProt=P21815 | |||
|association_with_transcript=0bp_to_NM_004967,uc003hqx.3_5end | |||
|coexpression_cluster_id=C77 | |||
|description=CAGE_peak_1_at_IBSP_5end | |||
|id=chr4:88720698..88720722,+ | |||
|ontology_enrichment_celltype=CL:0000062!2.73e-11!11;CL:0000375!2.73e-11!11;CL:0000335!2.73e-11!11;CL:0002564!8.09e-09!3;CL:0000153!5.01e-07!9;CL:0000447!5.01e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000062;1.36e-15;9!CL:0002564;2.34e-12;3!CL:0000153;9.49e-09;9!CL:0000447;9.49e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,8.86e-13,11;CL:0000375,8.86e-13,11;CL:0000335,8.86e-13,11;CL:0002564,2.40e-12,3;CL:0000153,8.52e-09,9;CL:0000447,8.52e-09,9 | |||
|ontology_enrichment_development_v019=CL:0000335;8.59e-13;11!UBERON:0010115;6.59e-10;1!UBERON:0006222;1.91e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;1.91e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,1.76e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001894!4.47e-13!7;UBERON:0006222!4.47e-13!7;UBERON:0001049!1.92e-12!57;UBERON:0005068!1.92e-12!57;UBERON:0006241!1.92e-12!57;UBERON:0007135!1.92e-12!57;UBERON:0007023!2.94e-12!115;UBERON:0003296!1.09e-10!4;UBERON:0010133!1.09e-10!4;UBERON:0002780!1.69e-10!41;UBERON:0001890!1.69e-10!41;UBERON:0006240!1.69e-10!41;UBERON:0002616!1.93e-10!59;UBERON:0003080!3.64e-10!42;UBERON:0001017!7.16e-10!82;UBERON:0000200!2.19e-09!6;UBERON:0005743!3.70e-09!86;UBERON:0000955!4.56e-09!69;UBERON:0006238!4.56e-09!69;UBERON:0002242!8.09e-09!3;UBERON:0003068!8.09e-09!3;UBERON:0002328!8.09e-09!3;UBERON:0004880!8.09e-09!3;UBERON:0003075!2.04e-08!86;UBERON:0007284!2.04e-08!86;UBERON:0002346!8.24e-08!90;UBERON:0000073!8.75e-08!94;UBERON:0001016!8.75e-08!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0004765;2.35e-15;26!UBERON:0002242;2.34e-12;3!UBERON:0001474;8.97e-12;18!UBERON:0001894;4.21e-11;7!UBERON:0001434;2.48e-10;36!UBERON:0004905;5.17e-10;8!UBERON:0000982;5.17e-10;8!UBERON:0004770;5.17e-10;8!UBERON:0002363;6.59e-10;1!UBERON:0011135;9.28e-08;5!UBERON:0002216;9.28e-08;5!UBERON:0011134;9.28e-08;5!UBERON:0002209;9.28e-08;5!UBERON:0002213;9.28e-08;5!UBERON:0007844;9.28e-08;5!UBERON:0011138;9.28e-08;5!UBERON:0001130;9.28e-08;5!UBERON:0001066;9.28e-08;5!UBERON:0001468;9.28e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002242,2.40e-12,3;UBERON:0003068,2.40e-12,3;UBERON:0002328,2.40e-12,3;UBERON:0004880,2.40e-12,3;UBERON:0001894,4.22e-11,7;UBERON:0006222,4.22e-11,7;UBERON:0004905,5.26e-10,8;UBERON:0000982,5.26e-10,8;UBERON:0004770,5.26e-10,8;UBERON:0002363,6.31e-10,1;UBERON:0007645,6.31e-10,1;UBERON:0007647,6.31e-10,1;UBERON:0010115,6.31e-10,1;UBERON:0011135,9.44e-08,5;UBERON:0002216,9.44e-08,5;UBERON:0011134,9.44e-08,5;UBERON:0002209,9.44e-08,5;UBERON:0002213,9.44e-08,5;UBERON:0005856,9.44e-08,5;UBERON:0005866,9.44e-08,5;UBERON:0005863,9.44e-08,5;UBERON:0007844,9.44e-08,5;UBERON:0011138,9.44e-08,5;UBERON:0001130,9.44e-08,5;UBERON:0001066,9.44e-08,5;UBERON:0001468,9.44e-08,5 | |||
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|short_description=p1@IBSP | |||
}} |
Revision as of 12:13, 13 September 2013
Short description: | p1@IBSP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IBSP_5end |
Coexpression cluster: | C77_Saos2_osteosarcoma_Neutrophils_Natural_Chondrocyte_Basophils_CD8 |
Association with transcript: | 0bp_to_NM_004967, uc003hqx.3_5end |
EntrezGene: | IBSP |
HGNC: | 5341 |
UniProt: | P21815 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 8.86e-13 | 11 |
osteoprogenitor cell | 8.86e-13 | 11 |
mesenchyme condensation cell | 8.86e-13 | 11 |
nucleus pulposus cell of intervertebral disc | 2.40e-12 | 3 |
GAG secreting cell | 8.52e-09 | 9 |
carbohydrate secreting cell | 8.52e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
nucleus pulposus | 2.40e-12 | 3 |
axial mesoderm | 2.40e-12 | 3 |
notochord | 2.40e-12 | 3 |
chordamesoderm | 2.40e-12 | 3 |
diencephalon | 4.22e-11 | 7 |
future diencephalon | 4.22e-11 | 7 |
articulation | 5.26e-10 | 8 |
skeletal joint | 5.26e-10 | 8 |
articular system | 5.26e-10 | 8 |
dura mater | 6.31e-10 | 1 |
future meninx | 6.31e-10 | 1 |
ectomeninx | 6.31e-10 | 1 |
future dura mater | 6.31e-10 | 1 |
intervertebral cartilage | 9.44e-08 | 5 |
symphysis | 9.44e-08 | 5 |
nonsynovial joint | 9.44e-08 | 5 |
fibrous joint | 9.44e-08 | 5 |
cartilaginous joint | 9.44e-08 | 5 |
developing mesenchymal condensation | 9.44e-08 | 5 |
pre-cartilage condensation | 9.44e-08 | 5 |
cartilaginous condensation | 9.44e-08 | 5 |
cartilage element | 9.44e-08 | 5 |
post-cranial axial skeletal system | 9.44e-08 | 5 |
vertebral column | 9.44e-08 | 5 |
intervertebral disk | 9.44e-08 | 5 |
intervertebral joint | 9.44e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 1.76e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.