FFCP PHASE1:Mm9::chr2:25097917..25097928,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=68846|HGNC=|MCL_coexpression_id=20|UniProt=Q8K0W3|association_with_transcript=142bp_to_ENSMUST00000154498_5end|description=CAGE_peak_5_at_Rnf208_5end|id=chr2:25097917..25097928,+|ontology_enrichment_celltype=CL:0000117!1.13e-11!23;CL:0000337!1.13e-11!23;CL:0000540!2.91e-08!33;CL:0000047!2.91e-08!33;CL:0000031!2.91e-08!33;CL:0000404!2.91e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-15,23;CL:0000337,1.09e-15,23;CL:0002610,1.70e-11,3;CL:0002614,1.10e-10,3;CL:0000540,2.53e-10,33;CL:0000047,2.53e-10,33;CL:0000031,2.53e-10,33;CL:0000404,2.53e-10,33;CL:0000393,1.99e-08,39;CL:0000211,1.99e-08,39;CL:0002319,1.85e-07,43;CL:0002611,2.27e-07,2;CL:0000221,3.03e-07,44;CL:0000133,3.03e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.55e-21!73;UBERON:0005743!5.55e-21!73;UBERON:0001049!2.45e-20!52;UBERON:0005068!2.45e-20!52;UBERON:0006241!2.45e-20!52;UBERON:0007135!2.45e-20!52;UBERON:0000073!5.37e-20!75;UBERON:0001016!5.37e-20!75;UBERON:0000955!5.98e-19!50;UBERON:0006238!5.98e-19!50;UBERON:0000033!7.74e-19!63;UBERON:0002616!3.74e-18!49;UBERON:0004121!5.31e-18!102;UBERON:0000924!5.31e-18!102;UBERON:0006601!5.31e-18!102;UBERON:0002020!5.49e-18!34;UBERON:0002346!5.12e-15!71;UBERON:0003075!5.12e-15!71;UBERON:0007284!5.12e-15!71;UBERON:0002791!8.66e-14!29;UBERON:0003528!8.66e-14!29;UBERON:0001893!8.66e-14!29;UBERON:0003080!9.74e-13!40;UBERON:0003056!2.16e-12!49;UBERON:0002780!6.97e-12!39;UBERON:0001890!6.97e-12!39;UBERON:0006240!6.97e-12!39;UBERON:0007811!7.20e-11!86;UBERON:0000153!2.65e-10!94;UBERON:0002619!3.76e-09!17;UBERON:0003076!6.91e-09!12;UBERON:0003057!6.91e-09!12;UBERON:0002021!2.21e-08!10;UBERON:0000411!2.21e-08!10;UBERON:0001950!2.21e-08!10;UBERON:0000956!5.73e-08!21;UBERON:0001869!5.73e-08!21;UBERON:0000203!5.73e-08!21;UBERON:0002298!6.59e-08!6;UBERON:0002420!1.04e-07!8;UBERON:0007245!1.04e-07!8;UBERON:0010009!1.04e-07!8;UBERON:0010011!1.04e-07!8;UBERON:0000454!1.04e-07!8;UBERON:0002240!6.30e-07!6;UBERON:0005174!6.30e-07!6;UBERON:0001137!6.30e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.19e-31,54;UBERON:0001049,4.49e-27,52;UBERON:0005068,4.49e-27,52;UBERON:0006241,4.49e-27,52;UBERON:0007135,4.49e-27,52;UBERON:0001017,5.36e-27,73;UBERON:0001016,3.68e-26,75;UBERON:0003076,1.17e-21,12;UBERON:0003057,1.17e-21,12;UBERON:0002346,3.16e-21,64;UBERON:0003075,3.16e-21,64;UBERON:0007284,3.16e-21,64;UBERON:0004121,1.01e-19,95;UBERON:0000924,1.01e-19,95;UBERON:0006601,1.01e-19,95;UBERON:0010371,4.24e-18,73;UBERON:0002616,9.40e-18,46;UBERON:0000955,2.65e-17,47;UBERON:0006238,2.65e-17,47;UBERON:0002020,5.22e-16,34;UBERON:0002950,9.15e-14,4;UBERON:0001891,9.15e-14,4;UBERON:0009616,9.15e-14,4;UBERON:0010286,9.15e-14,4;UBERON:0002240,1.43e-13,6;UBERON:0005174,1.43e-13,6;UBERON:0001137,1.43e-13,6;UBERON:0010314,1.70e-13,92;UBERON:0004684,1.70e-11,3;UBERON:0002275,1.70e-11,3;UBERON:0003080,2.09e-11,40;UBERON:0002038,1.10e-10,3;UBERON:0009663,1.10e-10,3;UBERON:0009661,1.10e-10,3;UBERON:0000125,1.10e-10,3;UBERON:0002308,1.10e-10,3;UBERON:0001948,2.42e-10,5;UBERON:0002315,2.42e-10,5;UBERON:0000025,4.50e-10,114;UBERON:0002780,7.30e-10,39;UBERON:0001890,7.30e-10,39;UBERON:0006240,7.30e-10,39;UBERON:0004733,9.34e-10,6;UBERON:0004732,9.34e-10,6;UBERON:0002028,9.34e-10,6;UBERON:0007277,9.34e-10,6;UBERON:0003528,1.31e-09,29;UBERON:0002791,1.31e-09,29;UBERON:0001893,1.31e-09,29;UBERON:0004111,3.92e-09,122;UBERON:0003056,7.36e-09,49;UBERON:0001896,3.29e-08,2;UBERON:0002298,3.29e-08,2;UBERON:0005290,3.29e-08,2;UBERON:0010096,3.29e-08,2;UBERON:0002256,2.27e-07,2;UBERON:0011216,2.75e-07,194;UBERON:0002420,7.41e-07,8;UBERON:0007245,7.41e-07,8;UBERON:0010009,7.41e-07,8;UBERON:0010011,7.41e-07,8;UBERON:0000454,7.41e-07,8|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,1.90149421051854,0,0,0,0,0,0,0,0,0,0,2.28520787523043,1.10434270475807,0.122490799214954,0,0,2.20231761998777,3.83062014255563,3.5329502648936,0.263772575460388,0.182975287204819,0.52091337055676,2.79182999001381,1.68828783009504,1.5279824777681,1.47314292736834,1.13897344639282,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34224637609238,2.30391377494801,0,0,0,0,2.24685959107234,1.83000241127451,0.125654352112864,1.56441888173049,1.27857728665165,2.28566849015516,1.1356888414743,0,0,0,0,0,0.229902104433473,0,0.150704817835715,0,0,0.187403449119458,0.258703370739016,0,0,0,0,0,0.696504333044333,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,1.05144974282064,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0,0.474529061544512,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05046120976805,2.69586879162067,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0.32977250588296,0.322928853391811,0.120625849856312,0,0.164140899745061,0.291480836629851,5.93360966433631,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0,0.269728692769641,0,0.785267825952089,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0.524296722128554,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0.906921534460845,0.221985953374065,0,0.335769232728157,0.386379188064381,0,0,0,0,0,1.84130094602871,0.572895513439397,0.859265911718438,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0.453142408984205,3.10656187051092,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0.187283014939765,0.128050304809739,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0.249810577937946,0,0.214871054048298,0,0.220591419119515,0.231867835620421|short_description=p5@Rnf208}} | ||
|EntrezGene=68846 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=Q8K0W3 | |||
|association_with_transcript=142bp_to_ENSMUST00000154498_5end | |||
|description=CAGE_peak_5_at_Rnf208_5end | |||
|id=chr2:25097917..25097928,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.13e-11!23;CL:0000337!1.13e-11!23;CL:0000540!2.91e-08!33;CL:0000047!2.91e-08!33;CL:0000031!2.91e-08!33;CL:0000404!2.91e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-15,23;CL:0000337,1.09e-15,23;CL:0002610,1.70e-11,3;CL:0002614,1.10e-10,3;CL:0000540,2.53e-10,33;CL:0000047,2.53e-10,33;CL:0000031,2.53e-10,33;CL:0000404,2.53e-10,33;CL:0000393,1.99e-08,39;CL:0000211,1.99e-08,39;CL:0002319,1.85e-07,43;CL:0002611,2.27e-07,2;CL:0000221,3.03e-07,44;CL:0000133,3.03e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.55e-21!73;UBERON:0005743!5.55e-21!73;UBERON:0001049!2.45e-20!52;UBERON:0005068!2.45e-20!52;UBERON:0006241!2.45e-20!52;UBERON:0007135!2.45e-20!52;UBERON:0000073!5.37e-20!75;UBERON:0001016!5.37e-20!75;UBERON:0000955!5.98e-19!50;UBERON:0006238!5.98e-19!50;UBERON:0000033!7.74e-19!63;UBERON:0002616!3.74e-18!49;UBERON:0004121!5.31e-18!102;UBERON:0000924!5.31e-18!102;UBERON:0006601!5.31e-18!102;UBERON:0002020!5.49e-18!34;UBERON:0002346!5.12e-15!71;UBERON:0003075!5.12e-15!71;UBERON:0007284!5.12e-15!71;UBERON:0002791!8.66e-14!29;UBERON:0003528!8.66e-14!29;UBERON:0001893!8.66e-14!29;UBERON:0003080!9.74e-13!40;UBERON:0003056!2.16e-12!49;UBERON:0002780!6.97e-12!39;UBERON:0001890!6.97e-12!39;UBERON:0006240!6.97e-12!39;UBERON:0007811!7.20e-11!86;UBERON:0000153!2.65e-10!94;UBERON:0002619!3.76e-09!17;UBERON:0003076!6.91e-09!12;UBERON:0003057!6.91e-09!12;UBERON:0002021!2.21e-08!10;UBERON:0000411!2.21e-08!10;UBERON:0001950!2.21e-08!10;UBERON:0000956!5.73e-08!21;UBERON:0001869!5.73e-08!21;UBERON:0000203!5.73e-08!21;UBERON:0002298!6.59e-08!6;UBERON:0002420!1.04e-07!8;UBERON:0007245!1.04e-07!8;UBERON:0010009!1.04e-07!8;UBERON:0010011!1.04e-07!8;UBERON:0000454!1.04e-07!8;UBERON:0002240!6.30e-07!6;UBERON:0005174!6.30e-07!6;UBERON:0001137!6.30e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.19e-31,54;UBERON:0001049,4.49e-27,52;UBERON:0005068,4.49e-27,52;UBERON:0006241,4.49e-27,52;UBERON:0007135,4.49e-27,52;UBERON:0001017,5.36e-27,73;UBERON:0001016,3.68e-26,75;UBERON:0003076,1.17e-21,12;UBERON:0003057,1.17e-21,12;UBERON:0002346,3.16e-21,64;UBERON:0003075,3.16e-21,64;UBERON:0007284,3.16e-21,64;UBERON:0004121,1.01e-19,95;UBERON:0000924,1.01e-19,95;UBERON:0006601,1.01e-19,95;UBERON:0010371,4.24e-18,73;UBERON:0002616,9.40e-18,46;UBERON:0000955,2.65e-17,47;UBERON:0006238,2.65e-17,47;UBERON:0002020,5.22e-16,34;UBERON:0002950,9.15e-14,4;UBERON:0001891,9.15e-14,4;UBERON:0009616,9.15e-14,4;UBERON:0010286,9.15e-14,4;UBERON:0002240,1.43e-13,6;UBERON:0005174,1.43e-13,6;UBERON:0001137,1.43e-13,6;UBERON:0010314,1.70e-13,92;UBERON:0004684,1.70e-11,3;UBERON:0002275,1.70e-11,3;UBERON:0003080,2.09e-11,40;UBERON:0002038,1.10e-10,3;UBERON:0009663,1.10e-10,3;UBERON:0009661,1.10e-10,3;UBERON:0000125,1.10e-10,3;UBERON:0002308,1.10e-10,3;UBERON:0001948,2.42e-10,5;UBERON:0002315,2.42e-10,5;UBERON:0000025,4.50e-10,114;UBERON:0002780,7.30e-10,39;UBERON:0001890,7.30e-10,39;UBERON:0006240,7.30e-10,39;UBERON:0004733,9.34e-10,6;UBERON:0004732,9.34e-10,6;UBERON:0002028,9.34e-10,6;UBERON:0007277,9.34e-10,6;UBERON:0003528,1.31e-09,29;UBERON:0002791,1.31e-09,29;UBERON:0001893,1.31e-09,29;UBERON:0004111,3.92e-09,122;UBERON:0003056,7.36e-09,49;UBERON:0001896,3.29e-08,2;UBERON:0002298,3.29e-08,2;UBERON:0005290,3.29e-08,2;UBERON:0010096,3.29e-08,2;UBERON:0002256,2.27e-07,2;UBERON:0011216,2.75e-07,194;UBERON:0002420,7.41e-07,8;UBERON:0007245,7.41e-07,8;UBERON:0010009,7.41e-07,8;UBERON:0010011,7.41e-07,8;UBERON:0000454,7.41e-07,8 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,1.90149421051854,0,0,0,0,0,0,0,0,0,0,2.28520787523043,1.10434270475807,0.122490799214954,0,0,2.20231761998777,3.83062014255563,3.5329502648936,0.263772575460388,0.182975287204819,0.52091337055676,2.79182999001381,1.68828783009504,1.5279824777681,1.47314292736834,1.13897344639282,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34224637609238,2.30391377494801,0,0,0,0,2.24685959107234,1.83000241127451,0.125654352112864,1.56441888173049,1.27857728665165,2.28566849015516,1.1356888414743,0,0,0,0,0,0.229902104433473,0,0.150704817835715,0,0,0.187403449119458,0.258703370739016,0,0,0,0,0,0.696504333044333,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,1.05144974282064,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0,0.474529061544512,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05046120976805,2.69586879162067,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0.32977250588296,0.322928853391811,0.120625849856312,0,0.164140899745061,0.291480836629851,5.93360966433631,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0,0.269728692769641,0,0.785267825952089,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0.524296722128554,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0.906921534460845,0.221985953374065,0,0.335769232728157,0.386379188064381,0,0,0,0,0,1.84130094602871,0.572895513439397,0.859265911718438,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0.453142408984205,3.10656187051092,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0.187283014939765,0.128050304809739,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0.249810577937946,0,0.214871054048298,0,0.220591419119515,0.231867835620421 | |||
|short_description=p5@Rnf208 | |||
}} |
Revision as of 23:25, 13 September 2013
Short description: | p5@Rnf208 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rnf208_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 142bp_to_ENSMUST00000154498_5end |
EntrezGene: | Rnf208 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.09e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-15 | 23 |
raphe nuclei neuron | 1.70e-11 | 3 |
neuron of the substantia nigra | 1.10e-10 | 3 |
neuron | 2.53e-10 | 33 |
neuronal stem cell | 2.53e-10 | 33 |
neuroblast | 2.53e-10 | 33 |
electrically signaling cell | 2.53e-10 | 33 |
electrically responsive cell | 1.99e-08 | 39 |
electrically active cell | 1.99e-08 | 39 |
neural cell | 1.85e-07 | 43 |
neuron of the dorsal spinal cord | 2.27e-07 | 2 |
ectodermal cell | 3.03e-07 | 44 |
neurectodermal cell | 3.03e-07 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.