FFCP PHASE1:Hg19::chr7:37393479..37393526,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1900|description=CAGE_peak_at_chr7:37393479..37393526,+|id=chr7:37393479..37393526,+|ontology_enrichment_celltype=CL:0000988!5.24e-30!182;CL:0000037!6.05e-28!172;CL:0000566!6.05e-28!172;CL:0002032!1.35e-25!165;CL:0000837!1.35e-25!165;CL:0000791!4.15e-21!18;CL:0000789!4.15e-21!18;CL:0002420!4.15e-21!18;CL:0002419!4.15e-21!18;CL:0000790!4.15e-21!18;CL:0000084!2.26e-19!25;CL:0000827!2.26e-19!25;CL:0000738!2.83e-19!140;CL:0000838!6.85e-16!52;CL:0000542!1.75e-15!53;CL:0000051!1.75e-15!53;CL:0000624!1.89e-15!6;CL:0000453!2.86e-14!5;CL:0002274!1.09e-13!5;CL:0000457!1.09e-13!5;CL:0002191!1.09e-13!5;CL:0000097!1.09e-13!5;CL:0000831!1.09e-13!5;CL:0002028!1.09e-13!5;CL:0002031!3.34e-13!124;CL:0000763!2.67e-11!112;CL:0000049!2.67e-11!112;CL:0000080!7.59e-11!6;CL:0000625!2.95e-10!11;CL:0002087!1.01e-08!119;CL:0000898!3.30e-08!3;CL:0000767!5.28e-08!3;CL:0000990!1.08e-07!8;CL:0000163!2.18e-07!9;CL:0000134!3.95e-07!358;CL:0001014!7.17e-07!2;CL:0001016!7.17e-07!2;CL:0002320!9.21e-07!365|ontology_enrichment_celltype_v019=CL:0000453;8.22e-30;5!CL:0001014;8.13e-20;2!CL:0001016;8.13e-20;2!CL:0000097;1.30e-17;5!CL:0000990;1.07e-16;8!CL:0000451;1.06e-13;10!CL:0000037;2.74e-10;1!CL:0001024;2.74e-10;1!CL:0000163;5.01e-10;9!CL:0000840;3.39e-07;5!CL:0000624;7.08e-07;6|ontology_enrichment_celltype_v019_2=CL:0000453,5.49e-30,5;CL:0001014,7.77e-20,2;CL:0001016,7.77e-20,2;CL:0000097,1.34e-17,5;CL:0002028,1.34e-17,5;CL:0000988,1.82e-17,177;CL:0000990,8.61e-17,8;CL:0000451,8.84e-14,10;CL:0000037,8.62e-13,168;CL:0002032,9.18e-12,161;CL:0000837,9.18e-12,161;CL:0001024,3.61e-10,1;CL:0000163,5.09e-10,9;CL:0000763,1.90e-08,108;CL:0000049,1.90e-08,108;CL:0000738,1.05e-07,136;CL:0000840,3.34e-07,5;CL:0001029,3.34e-07,5;CL:0000624,6.88e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:8692!1.04e-07!31;DOID:1240!9.33e-07!39|ontology_enrichment_disease_v019=DOID:1036;1.23e-10;8!DOID:0060060;2.74e-10;1!DOID:0060061;2.74e-10;1!DOID:8691;2.74e-10;1|ontology_enrichment_disease_v019_2=DOID:1036,1.66e-10,8;DOID:0060060,1.89e-10,1;DOID:0060061,1.89e-10,1;DOID:8691,1.89e-10,1|ontology_enrichment_uberon=UBERON:0000178!1.33e-07!15;UBERON:0000179!1.33e-07!15;UBERON:0000463!1.33e-07!15;UBERON:0002390!4.63e-07!102;UBERON:0003061!4.63e-07!102|ontology_enrichment_uberon_v019=UBERON:0002331;7.94e-09;10|ontology_enrichment_uberon_v019_2=UBERON:0002331,7.43e-09,10;UBERON:0000358,7.43e-09,10;UBERON:0000307,7.43e-09,10;UBERON:0000091,7.43e-09,10;UBERON:0000087,7.43e-09,10;UBERON:0007010,7.43e-09,10;UBERON:0007806,7.43e-09,10;UBERON:0008780,7.43e-09,10;UBERON:0005728,7.43e-09,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,1.17440175733939,0.553995408531877,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,1.76171156811282,0.382273228125229,1.32171328579026,0,0.263384084775077,1.37696839079683,0.786021525498329,1.23360899399706,0,0.977766799900771,0.473447805734733,0,0,0.294605907474837,0,0.541607727530031,0,0.130059347559878,0,0,0,0.444859689486181,0,1.04535523804977,0,0.383220493601921,0,0.253019692019503,0.637130828648193,0,0,0,0.127986611154418,1.24930726552346,0.473554504088034,0,0.604820229674197,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0.176096868026452,8.9151089682532,8.79131715843465,10.0993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,2.19537308576098,0,0.635020748171649,0.324621940274555,0.561594356226918,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0.33307196799782,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,1.2558420511602,0,0,0,0,0,1.11255605286265,0,0,0,0,0,0,0,6.52346483097368,2.47127877893006,1.35748534357092,0,0,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1900 | |||
|description=CAGE_peak_at_chr7:37393479..37393526,+ | |||
|id=chr7:37393479..37393526,+ | |||
|ontology_enrichment_celltype=CL:0000988!5.24e-30!182;CL:0000037!6.05e-28!172;CL:0000566!6.05e-28!172;CL:0002032!1.35e-25!165;CL:0000837!1.35e-25!165;CL:0000791!4.15e-21!18;CL:0000789!4.15e-21!18;CL:0002420!4.15e-21!18;CL:0002419!4.15e-21!18;CL:0000790!4.15e-21!18;CL:0000084!2.26e-19!25;CL:0000827!2.26e-19!25;CL:0000738!2.83e-19!140;CL:0000838!6.85e-16!52;CL:0000542!1.75e-15!53;CL:0000051!1.75e-15!53;CL:0000624!1.89e-15!6;CL:0000453!2.86e-14!5;CL:0002274!1.09e-13!5;CL:0000457!1.09e-13!5;CL:0002191!1.09e-13!5;CL:0000097!1.09e-13!5;CL:0000831!1.09e-13!5;CL:0002028!1.09e-13!5;CL:0002031!3.34e-13!124;CL:0000763!2.67e-11!112;CL:0000049!2.67e-11!112;CL:0000080!7.59e-11!6;CL:0000625!2.95e-10!11;CL:0002087!1.01e-08!119;CL:0000898!3.30e-08!3;CL:0000767!5.28e-08!3;CL:0000990!1.08e-07!8;CL:0000163!2.18e-07!9;CL:0000134!3.95e-07!358;CL:0001014!7.17e-07!2;CL:0001016!7.17e-07!2;CL:0002320!9.21e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000453;8.22e-30;5!CL:0001014;8.13e-20;2!CL:0001016;8.13e-20;2!CL:0000097;1.30e-17;5!CL:0000990;1.07e-16;8!CL:0000451;1.06e-13;10!CL:0000037;2.74e-10;1!CL:0001024;2.74e-10;1!CL:0000163;5.01e-10;9!CL:0000840;3.39e-07;5!CL:0000624;7.08e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,5.49e-30,5;CL:0001014,7.77e-20,2;CL:0001016,7.77e-20,2;CL:0000097,1.34e-17,5;CL:0002028,1.34e-17,5;CL:0000988,1.82e-17,177;CL:0000990,8.61e-17,8;CL:0000451,8.84e-14,10;CL:0000037,8.62e-13,168;CL:0002032,9.18e-12,161;CL:0000837,9.18e-12,161;CL:0001024,3.61e-10,1;CL:0000163,5.09e-10,9;CL:0000763,1.90e-08,108;CL:0000049,1.90e-08,108;CL:0000738,1.05e-07,136;CL:0000840,3.34e-07,5;CL:0001029,3.34e-07,5;CL:0000624,6.88e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!1.04e-07!31;DOID:1240!9.33e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.23e-10;8!DOID:0060060;2.74e-10;1!DOID:0060061;2.74e-10;1!DOID:8691;2.74e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.66e-10,8;DOID:0060060,1.89e-10,1;DOID:0060061,1.89e-10,1;DOID:8691,1.89e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.33e-07!15;UBERON:0000179!1.33e-07!15;UBERON:0000463!1.33e-07!15;UBERON:0002390!4.63e-07!102;UBERON:0003061!4.63e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;7.94e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,7.43e-09,10;UBERON:0000358,7.43e-09,10;UBERON:0000307,7.43e-09,10;UBERON:0000091,7.43e-09,10;UBERON:0000087,7.43e-09,10;UBERON:0007010,7.43e-09,10;UBERON:0007806,7.43e-09,10;UBERON:0008780,7.43e-09,10;UBERON:0005728,7.43e-09,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,1.17440175733939,0.553995408531877,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,1.76171156811282,0.382273228125229,1.32171328579026,0,0.263384084775077,1.37696839079683,0.786021525498329,1.23360899399706,0,0.977766799900771,0.473447805734733,0,0,0.294605907474837,0,0.541607727530031,0,0.130059347559878,0,0,0,0.444859689486181,0,1.04535523804977,0,0.383220493601921,0,0.253019692019503,0.637130828648193,0,0,0,0.127986611154418,1.24930726552346,0.473554504088034,0,0.604820229674197,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0.176096868026452,8.9151089682532,8.79131715843465,10.0993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,2.19537308576098,0,0.635020748171649,0.324621940274555,0.561594356226918,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0.33307196799782,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,1.2558420511602,0,0,0,0,0,1.11255605286265,0,0,0,0,0,0,0,6.52346483097368,2.47127877893006,1.35748534357092,0,0,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.39937339723601,10.8332273638113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06720276974141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,3.05589132720735,1.63565394255844,0,0,0,1.59989916683944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315446980005013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:37393479..37393526,+ | |||
}} |
Revision as of 01:06, 14 September 2013
Short description: | p@chr7:37393479..37393526, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:37393479..37393526, + |
Coexpression cluster: | C1900_Mast_cord_immature_CD14_CD34_chronic_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 5.49e-30 | 5 |
CD1a-positive Langerhans cell | 7.77e-20 | 2 |
immature CD1a-positive Langerhans cell | 7.77e-20 | 2 |
mast cell | 1.34e-17 | 5 |
basophil mast progenitor cell | 1.34e-17 | 5 |
hematopoietic cell | 1.82e-17 | 177 |
conventional dendritic cell | 8.61e-17 | 8 |
dendritic cell | 8.84e-14 | 10 |
hematopoietic stem cell | 8.62e-13 | 168 |
hematopoietic oligopotent progenitor cell | 9.18e-12 | 161 |
hematopoietic multipotent progenitor cell | 9.18e-12 | 161 |
CD34-positive, CD38-negative hematopoietic stem cell | 3.61e-10 | 1 |
endocrine cell | 5.09e-10 | 9 |
myeloid cell | 1.90e-08 | 108 |
common myeloid progenitor | 1.90e-08 | 108 |
leukocyte | 1.05e-07 | 136 |
immature conventional dendritic cell | 3.34e-07 | 5 |
common dendritic progenitor | 3.34e-07 | 5 |
CD4-positive, alpha-beta T cell | 6.88e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 7.43e-09 | 10 |
blastocyst | 7.43e-09 | 10 |
blastula | 7.43e-09 | 10 |
bilaminar disc | 7.43e-09 | 10 |
inner cell mass | 7.43e-09 | 10 |
cleaving embryo | 7.43e-09 | 10 |
connecting stalk | 7.43e-09 | 10 |
inner cell mass derived epiblast | 7.43e-09 | 10 |
extraembryonic mesoderm | 7.43e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.66e-10 | 8 |
non-Hodgkin lymphoma | 1.89e-10 | 1 |
cutaneous T cell lymphoma | 1.89e-10 | 1 |
mycosis fungoides | 1.89e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.