FFCP PHASE1:Mm9::chr4:119330222..119330241,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1198|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:119330222..119330241,-|id=chr4:119330222..119330241,-|ontology_enrichment_celltype=CL:0000239!1.65e-14!6;CL:0000677!1.65e-14!6;CL:0000212!1.65e-14!6;CL:0000584!1.65e-14!6;CL:0000075!2.50e-12!7;CL:0002563!2.03e-09!9;CL:0002251!2.03e-09!9;CL:0000473!1.96e-08!3;CL:0000627!1.96e-08!3;CL:0000682!1.96e-08!3|ontology_enrichment_celltype_v019_2=CL:0000239,1.35e-14,6;CL:0000677,1.35e-14,6;CL:0000584,1.35e-14,6;CL:0000075,1.77e-12,7;CL:0000682,1.87e-11,3;CL:0002563,1.19e-09,9;CL:0002251,1.19e-09,9;CL:0000066,5.69e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.91e-29!43;UBERON:0000344!1.69e-21!15;UBERON:0005409!1.03e-19!59;UBERON:0001242!4.83e-17!13;UBERON:0000060!4.83e-17!13;UBERON:0001262!4.83e-17!13;UBERON:0004786!4.83e-17!13;UBERON:0004923!1.68e-14!24;UBERON:0003350!2.03e-09!9;UBERON:0004808!2.03e-09!9;UBERON:0001277!2.03e-09!9;UBERON:0001007!1.19e-07!128;UBERON:0001555!1.19e-07!128;UBERON:0007026!1.19e-07!128;UBERON:0000485!1.44e-07!11;UBERON:0000331!1.71e-07!3;UBERON:0002116!1.71e-07!3;UBERON:0001204!1.71e-07!3;UBERON:0001168!1.71e-07!3;UBERON:0004119!1.93e-07!130;UBERON:0000925!1.93e-07!130;UBERON:0006595!1.93e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.03e-36,31;UBERON:0000344,3.95e-26,15;UBERON:0005409,8.20e-23,47;UBERON:0001242,5.79e-20,13;UBERON:0001262,5.79e-20,13;UBERON:0004786,5.79e-20,13;UBERON:0004923,1.36e-15,24;UBERON:0002108,6.79e-13,4;UBERON:0000331,4.18e-10,3;UBERON:0002116,4.18e-10,3;UBERON:0001204,4.18e-10,3;UBERON:0001168,4.18e-10,3;UBERON:0003350,1.19e-09,9;UBERON:0004808,1.19e-09,9;UBERON:0001277,1.19e-09,9;UBERON:0001007,2.77e-09,116;UBERON:0001555,2.77e-09,116;UBERON:0007026,2.77e-09,116;UBERON:0004119,4.66e-09,118;UBERON:0000925,4.66e-09,118;UBERON:0006595,4.66e-09,118;UBERON:0001962,2.09e-08,2;UBERON:0001961,2.09e-08,2;UBERON:0001744,2.09e-08,2;UBERON:0000485,7.60e-08,11;UBERON:0004921,2.91e-07,114|phase1_expression=0,4.88565570695105,7.27998783023258,2.72217790176147,2.50447864973174,0.839396359559449,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,4.15980299262857,6.65286915094793,4.59385571292016,3.87685796543167,3.44753972297422,1.14014051673824,2.01624103807945,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,3.57639877292028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,3.70230793328962,0,0,0.128867461322093,0,0.22237804384487,0.951128130562796,4.2707615539006,1.81168850196412,0.502670417600539,1.1937388322469,1.9496408711912,9.88701349519644,2.80979464837102,3.38540164532424,0,0.114248512609729,0,0,0,0,0,0,0.470996183524124,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1436124960206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:119330222..119330241,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1198 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:119330222..119330241,- | |||
|id=chr4:119330222..119330241,- | |||
|ontology_enrichment_celltype=CL:0000239!1.65e-14!6;CL:0000677!1.65e-14!6;CL:0000212!1.65e-14!6;CL:0000584!1.65e-14!6;CL:0000075!2.50e-12!7;CL:0002563!2.03e-09!9;CL:0002251!2.03e-09!9;CL:0000473!1.96e-08!3;CL:0000627!1.96e-08!3;CL:0000682!1.96e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.35e-14,6;CL:0000677,1.35e-14,6;CL:0000584,1.35e-14,6;CL:0000075,1.77e-12,7;CL:0000682,1.87e-11,3;CL:0002563,1.19e-09,9;CL:0002251,1.19e-09,9;CL:0000066,5.69e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.91e-29!43;UBERON:0000344!1.69e-21!15;UBERON:0005409!1.03e-19!59;UBERON:0001242!4.83e-17!13;UBERON:0000060!4.83e-17!13;UBERON:0001262!4.83e-17!13;UBERON:0004786!4.83e-17!13;UBERON:0004923!1.68e-14!24;UBERON:0003350!2.03e-09!9;UBERON:0004808!2.03e-09!9;UBERON:0001277!2.03e-09!9;UBERON:0001007!1.19e-07!128;UBERON:0001555!1.19e-07!128;UBERON:0007026!1.19e-07!128;UBERON:0000485!1.44e-07!11;UBERON:0000331!1.71e-07!3;UBERON:0002116!1.71e-07!3;UBERON:0001204!1.71e-07!3;UBERON:0001168!1.71e-07!3;UBERON:0004119!1.93e-07!130;UBERON:0000925!1.93e-07!130;UBERON:0006595!1.93e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.03e-36,31;UBERON:0000344,3.95e-26,15;UBERON:0005409,8.20e-23,47;UBERON:0001242,5.79e-20,13;UBERON:0001262,5.79e-20,13;UBERON:0004786,5.79e-20,13;UBERON:0004923,1.36e-15,24;UBERON:0002108,6.79e-13,4;UBERON:0000331,4.18e-10,3;UBERON:0002116,4.18e-10,3;UBERON:0001204,4.18e-10,3;UBERON:0001168,4.18e-10,3;UBERON:0003350,1.19e-09,9;UBERON:0004808,1.19e-09,9;UBERON:0001277,1.19e-09,9;UBERON:0001007,2.77e-09,116;UBERON:0001555,2.77e-09,116;UBERON:0007026,2.77e-09,116;UBERON:0004119,4.66e-09,118;UBERON:0000925,4.66e-09,118;UBERON:0006595,4.66e-09,118;UBERON:0001962,2.09e-08,2;UBERON:0001961,2.09e-08,2;UBERON:0001744,2.09e-08,2;UBERON:0000485,7.60e-08,11;UBERON:0004921,2.91e-07,114 | |||
|phase1_expression=0,4.88565570695105,7.27998783023258,2.72217790176147,2.50447864973174,0.839396359559449,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,4.15980299262857,6.65286915094793,4.59385571292016,3.87685796543167,3.44753972297422,1.14014051673824,2.01624103807945,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,3.57639877292028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,3.70230793328962,0,0,0.128867461322093,0,0.22237804384487,0.951128130562796,4.2707615539006,1.81168850196412,0.502670417600539,1.1937388322469,1.9496408711912,9.88701349519644,2.80979464837102,3.38540164532424,0,0.114248512609729,0,0,0,0,0,0,0.470996183524124,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1436124960206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:119330222..119330241,- | |||
}} |
Revision as of 03:38, 14 September 2013
Short description: | p@chr4:119330222..119330241, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:119330222..119330241, - |
Coexpression cluster: | MCL_coexpression_mm9:1198 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.35e-14 | 6 |
gut absorptive cell | 1.35e-14 | 6 |
enterocyte | 1.35e-14 | 6 |
columnar/cuboidal epithelial cell | 1.77e-12 | 7 |
M cell of gut | 1.87e-11 | 3 |
intestinal epithelial cell | 1.19e-09 | 9 |
epithelial cell of alimentary canal | 1.19e-09 | 9 |
epithelial cell | 5.69e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.03e-36 | 31 |
mucosa | 3.95e-26 | 15 |
gastrointestinal system | 8.20e-23 | 47 |
intestinal mucosa | 5.79e-20 | 13 |
wall of intestine | 5.79e-20 | 13 |
gastrointestinal system mucosa | 5.79e-20 | 13 |
organ component layer | 1.36e-15 | 24 |
small intestine | 6.79e-13 | 4 |
ileal mucosa | 4.18e-10 | 3 |
ileum | 4.18e-10 | 3 |
mucosa of small intestine | 4.18e-10 | 3 |
wall of small intestine | 4.18e-10 | 3 |
epithelium of mucosa | 1.19e-09 | 9 |
gastrointestinal system epithelium | 1.19e-09 | 9 |
intestinal epithelium | 1.19e-09 | 9 |
digestive system | 2.77e-09 | 116 |
digestive tract | 2.77e-09 | 116 |
primitive gut | 2.77e-09 | 116 |
endoderm-derived structure | 4.66e-09 | 118 |
endoderm | 4.66e-09 | 118 |
presumptive endoderm | 4.66e-09 | 118 |
gut-associated lymphoid tissue | 2.09e-08 | 2 |
mucosa-associated lymphoid tissue | 2.09e-08 | 2 |
lymphoid tissue | 2.09e-08 | 2 |
simple columnar epithelium | 7.60e-08 | 11 |
subdivision of digestive tract | 2.91e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.