FFCP PHASE1:Mm9::chr7:26179306..26179326,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=654804|HGNC=|MCL_coexpression_id=88|UniProt=|association_with_transcript=-405bp_to_uc012fft.1_5end|description=CAGE_peak_4_at_4732471J01Rik_5end|id=chr7:26179306..26179326,+|ontology_enrichment_celltype=CL:0002563!8.73e-18!9;CL:0002251!8.73e-18!9;CL:0000239!1.20e-15!6;CL:0000677!1.20e-15!6;CL:0000212!1.20e-15!6;CL:0000584!1.20e-15!6;CL:0000075!2.64e-13!7;CL:0000066!5.23e-13!25;CL:0002076!4.30e-10!15;CL:0000223!3.07e-09!20;CL:0000473!7.30e-09!3;CL:0000627!7.30e-09!3;CL:0000682!7.30e-09!3|ontology_enrichment_celltype_v019_2=CL:0000239,2.03e-33,6;CL:0000677,2.03e-33,6;CL:0000584,2.03e-33,6;CL:0000075,8.27e-29,7;CL:0002563,1.19e-22,9;CL:0002251,1.19e-22,9;CL:0002076,5.35e-14,15;CL:0000223,9.91e-11,20;CL:0000066,9.29e-09,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003350!8.73e-18!9;UBERON:0004808!8.73e-18!9;UBERON:0001277!8.73e-18!9;UBERON:0001242!5.11e-15!13;UBERON:0000060!5.11e-15!13;UBERON:0001262!5.11e-15!13;UBERON:0004786!5.11e-15!13;UBERON:0000485!2.74e-14!11;UBERON:0000344!8.86e-13!15;UBERON:0004923!4.77e-09!24;UBERON:0000014!6.01e-08!5;UBERON:0001003!6.01e-08!5;UBERON:0002097!6.01e-08!5;UBERON:0002199!6.01e-08!5;UBERON:0007029!6.01e-08!5;UBERON:0007376!6.01e-08!5;UBERON:0002416!6.01e-08!5;UBERON:0007383!6.01e-08!5|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.19e-22,9;UBERON:0004808,1.19e-22,9;UBERON:0001277,1.19e-22,9;UBERON:0000996,1.39e-22,1;UBERON:0000485,1.00e-18,11;UBERON:0001242,5.32e-16,13;UBERON:0001262,5.32e-16,13;UBERON:0004786,5.32e-16,13;UBERON:0000344,5.35e-14,15;UBERON:0004923,4.35e-09,24;UBERON:0000162,1.88e-08,3;UBERON:0001353,1.88e-08,3;UBERON:0000163,1.88e-08,3;UBERON:0006866,1.88e-08,3;UBERON:0001046,1.88e-08,3;UBERON:0000164,1.88e-08,3;UBERON:0000931,1.88e-08,3;UBERON:0000160,3.20e-07,31|phase1_expression=0,2.79180326111489,0.454999239389536,9.37639055051173,6.51164448930251,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57423196411502,0.430761996159075,0.861884930743556,0,0,0,0,0,0,0.288851619751275,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247194967734374,0.289198713839823,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0.358117032009409,0.656563598980245,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,1.50057865355346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0,0.128050304809739,0.114870937911227,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0|short_description=p4@4732471J01Rik}} | ||
|EntrezGene=654804 | |||
|HGNC= | |||
|MCL_coexpression_id=88 | |||
|UniProt= | |||
|association_with_transcript=-405bp_to_uc012fft.1_5end | |||
|description=CAGE_peak_4_at_4732471J01Rik_5end | |||
|id=chr7:26179306..26179326,+ | |||
|ontology_enrichment_celltype=CL:0002563!8.73e-18!9;CL:0002251!8.73e-18!9;CL:0000239!1.20e-15!6;CL:0000677!1.20e-15!6;CL:0000212!1.20e-15!6;CL:0000584!1.20e-15!6;CL:0000075!2.64e-13!7;CL:0000066!5.23e-13!25;CL:0002076!4.30e-10!15;CL:0000223!3.07e-09!20;CL:0000473!7.30e-09!3;CL:0000627!7.30e-09!3;CL:0000682!7.30e-09!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.03e-33,6;CL:0000677,2.03e-33,6;CL:0000584,2.03e-33,6;CL:0000075,8.27e-29,7;CL:0002563,1.19e-22,9;CL:0002251,1.19e-22,9;CL:0002076,5.35e-14,15;CL:0000223,9.91e-11,20;CL:0000066,9.29e-09,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003350!8.73e-18!9;UBERON:0004808!8.73e-18!9;UBERON:0001277!8.73e-18!9;UBERON:0001242!5.11e-15!13;UBERON:0000060!5.11e-15!13;UBERON:0001262!5.11e-15!13;UBERON:0004786!5.11e-15!13;UBERON:0000485!2.74e-14!11;UBERON:0000344!8.86e-13!15;UBERON:0004923!4.77e-09!24;UBERON:0000014!6.01e-08!5;UBERON:0001003!6.01e-08!5;UBERON:0002097!6.01e-08!5;UBERON:0002199!6.01e-08!5;UBERON:0007029!6.01e-08!5;UBERON:0007376!6.01e-08!5;UBERON:0002416!6.01e-08!5;UBERON:0007383!6.01e-08!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.19e-22,9;UBERON:0004808,1.19e-22,9;UBERON:0001277,1.19e-22,9;UBERON:0000996,1.39e-22,1;UBERON:0000485,1.00e-18,11;UBERON:0001242,5.32e-16,13;UBERON:0001262,5.32e-16,13;UBERON:0004786,5.32e-16,13;UBERON:0000344,5.35e-14,15;UBERON:0004923,4.35e-09,24;UBERON:0000162,1.88e-08,3;UBERON:0001353,1.88e-08,3;UBERON:0000163,1.88e-08,3;UBERON:0006866,1.88e-08,3;UBERON:0001046,1.88e-08,3;UBERON:0000164,1.88e-08,3;UBERON:0000931,1.88e-08,3;UBERON:0000160,3.20e-07,31 | |||
|phase1_expression=0,2.79180326111489,0.454999239389536,9.37639055051173,6.51164448930251,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57423196411502,0.430761996159075,0.861884930743556,0,0,0,0,0,0,0.288851619751275,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247194967734374,0.289198713839823,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0.358117032009409,0.656563598980245,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,1.50057865355346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0,0.128050304809739,0.114870937911227,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0 | |||
|short_description=p4@4732471J01Rik | |||
}} |
Revision as of 12:54, 14 September 2013
Short description: | p4@4732471J01Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_4732471J01Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | -405bp_to_uc012fft.1_5end |
EntrezGene: | 4732471J01Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.03e-33 | 6 |
gut absorptive cell | 2.03e-33 | 6 |
enterocyte | 2.03e-33 | 6 |
columnar/cuboidal epithelial cell | 8.27e-29 | 7 |
intestinal epithelial cell | 1.19e-22 | 9 |
epithelial cell of alimentary canal | 1.19e-22 | 9 |
endo-epithelial cell | 5.35e-14 | 15 |
endodermal cell | 9.91e-11 | 20 |
epithelial cell | 9.29e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 1.19e-22 | 9 |
gastrointestinal system epithelium | 1.19e-22 | 9 |
intestinal epithelium | 1.19e-22 | 9 |
vagina | 1.39e-22 | 1 |
simple columnar epithelium | 1.00e-18 | 11 |
intestinal mucosa | 5.32e-16 | 13 |
wall of intestine | 5.32e-16 | 13 |
gastrointestinal system mucosa | 5.32e-16 | 13 |
mucosa | 5.35e-14 | 15 |
organ component layer | 4.35e-09 | 24 |
cloaca | 1.88e-08 | 3 |
anal region | 1.88e-08 | 3 |
embryonic cloaca | 1.88e-08 | 3 |
terminal part of digestive tract | 1.88e-08 | 3 |
hindgut | 1.88e-08 | 3 |
primitive urogenital sinus | 1.88e-08 | 3 |
proctodeum | 1.88e-08 | 3 |
intestine | 3.20e-07 | 31 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.